morexGenes - Barley RNA-seq Database

Contig contig_43256
Source Contig contig_43256
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43256 (7663 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_43256

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59087	1	2999 bp	MLOC_59087.1	Available	Available	LOC_Os07g23900.1, FRAME:-3, EVALUE:9e-144, 13107.m02356 protein OsFBX234 - F-box domain containing protein, expressed
CDS Structure of MLOC_59087

Contig Sequence (7663 bp)

>contig_43256 7663 assembly3_WGSMorex_rbca.fasta
TATACGATCCTAAATATAAGTCTTTTTAAAGTTTTTACTAGTGGACTACATATGAAGCAA
AATGAGTGAATCTACACTNNNNNNNNNNNNTATATGCATCCGTATGTAGTCTTCTAGTGC
AACCTCTAAAAAGACATATTTGGAAACGGAGGGAGTAGTCCATAACAGGTCAAATCTCAG
AGATTCAAATTGAGTAGGTTTCCCATGCCAATTATTCTCAGTTTGCACTACTAGCACACC
AAATGGACTGGCTACACCTATATGTCAAGATAACAACTGTTAATTACAGGAGTATGCCTT
TGTTGACAAACAGAACAAACAAACTAAGCAAACACATAAACGCAGTAAAGGGAATGCAAG
GACAACGGGTAAGCACCAGGCTGTTTTAGCATTTAGCAATATAACCTAGAAGCCACTTCA
CCCTTCATCCATTGCATAAACCTCAATTTTTTGTAGTCATTAGTTTCTTTCTCTCGGTAT
GGACTGTAATGAGAGGCTTGGAATAATGTTTTCCCTAATTCAGTACTTCCTTTCCATTCC
CAACTCTACCCTTCTCTTTTTAGCTTTGCTTGTATGGACATTCCATTCCTTCTTTAATAC
AATGATGCGCAGCGCATTCAAGGAAAATAAATAAAGCAACAATGGCCCTAGAGGAAAATA
GAAATTATGCAATTGCCATGGCTTCTCATGGACCGGTACATATAATAGCAGAACGATAAC
AAGACTTGAATCCATAACTCACAAATGACCACAGAGGTGCCTTTTTGCTTAATGACATCA
TAACCTTGACACAAAATGTTCAAGCTCTCAGTGATTTTTTTCTTCCATTTTTCAACTTTT
TTGCTAACTCGGGTGTAGTACACCTGAGAGTAGAAAATCTAGTCCCATTGTAAAACATCT
GACTTCTACCCGTTAGATGATGTTTTCAATACATTTAAAAATGATGAACATTTTATTGTG
AAATCAACTTGTCACTTGGATTTTGAATTTCCATTTGTTTGTCCAAAAAGTTTGACAGTG
ACACTGCTACTTGACATCCCGGGATGAACATCAGGCAACACGGAACCTGATATAGAAGTT
TCATGGAAGGGAAATGGCAGACAGATAGACTACACACTACTCTAGTTCCAACTAGCTCAG
TTGAGAATTAGCCAAGAAGTAACAGAAACATGGCTGACATGCTAAACAGAAACACAATTT
TTCAATAATATGATCAGCATGAAATTAATCATATTAACCTGCACTGTAAACTACTAAAAA
GAAAATAAACGAGTTGGTAGTGGCAAATGAAAAAGAAACCAACTAAAGCAGACTAAGAGA
TCAGGTGATCTTTGCTAACGGTAACAATGCCATGATCTGAGAAGAGATACCATGCAGAAA
ACTCATAACCAACTCTTACTCAGAATTAAACTTTGATGAGCGATGTGCTAGTGGTGATAA
CAGAGGTTGCAAGACTGAGTTTGAGACGTGAGCTTTTAACTAAGCCAGAAATAACAGATT
TTTTTCCCAAGAAAGTCTCAAGCAAGGTAACAGGAAAACACTAGATTGACAAGGCTATAT
GCATATGTAGAAATTCAACCAATGCATATCATCATGGCCCTTAATAGATCAAATCTCATA
ACCAAAACCATGCTCTGTTTTCCAATGTCATATATTGAAGTTTTATCTAGCATACACGAA
TTTTCCTCAGGCAAGATCAATACGGGTATACAAACTAACAAATTTTACTTGCAATATAAC
TGATTGTTCACAAACGAGAACCAGCTAAGTAAGAAAACGTATGGAAGCTGTAAAATGAAG
GATAACACAATCAAGGACTGATACCATACCAGGAGTGTAGAAGCTCATGTAGGGTAAGAC
GGAAAAGTAGACCCCAGGTTCATCAACCTTCTTCACCAGCCCGGACTTGAGCTCGATCAT
GAATAAGCCACCCTCTGCCTTAATGAAGATGACACCCAGACCCTCTGCGAAACCAACCAC
ATTTGCTCCATTGCCTTTGAGGGGTTTGGCCATGGGCATGATTTTCTCCAGGTCAATGAC
CATGCACTGTACCCATTTTGCAGCTCCCTCCACCTTCCTTGACCAGAGATGCAGACTGAA
ATCCTGAACACCAGCGAGCCCCAGTGAACTGTCCTCCATGGCCATGAGGGCAATGAAACC
ATCGTACACTTATGTATCTGGTGGTGGTGGGTCAATCACAGACAAGCGATTCTGGCCGCA
GTCGTACTTGGCAATGGCACTAGACCGCGAAATCGTGAAGTAGACTGCATCTCCAATAGC
GGCTACTCGCCTAGGTTGGACATAGGGTATGTAATACATCCTTTTTGCAGTTGCATCTCG
CTTGTGCCGGGCATAGCATTCACAGCTATCATCGAGAGATACTGGCTCGCTCCACGCACC
TGTCACCGATGAGTACACGCTCGCCTTGACGACGTCTTGGTCGCCGTCGGTGGCCAGGAA
GACCACGCGGAAGGGCCCGCCGTGGCAGTCGAGGTGGTCGCAGCCGGCGGTGGCGCAGAA
CACGCTGGCGGTGTAGATCATCCAGTCGATGTCCGGGACGGGCATGACGTGACGGTCGCC
GGTGACGGGGTCCCAGACGAGGAGATCCATACCCTGGTCATGGAACATGTGGATGAGGAC
GCGGCCGTGGCGGCAGTCGAGGGGGCGCGTGTGGCGGCCGTCGGAGCCTGGGTGGGGGAA
GTCGGGCATCGACGTGGTGGAGGCGAAGCGCGGGTCGGGGTCTCCGTCGAAGACTTGGGT
CCTGTGGAGGAGGCCGAGCAGCGGAGGGGCGCCGTGGAACGCGCGGTACCGGCGGCGGAA
GGCGGGGTCGCAGATGACGCGGAGCCAGGGCTTGCAGACGAGGGCGGCGCGGAAGAGGTG
CTCGGGCTCATCCGGCGGGAGGCGGAGGAGTATCTCTGCGACGACGTCGTCGATGAGGTT
GACCGACGGCGGCGGCGGCGGCGGCGGCGCCATGGTGGGCTAGCTCGTGGGGTTTGGGTG
GGGTTCGGACGGAATGGGGAGAAGCGAGAGCGAGGGGCCGATTTGGGCGCCCCTGTGTCT
CGCTTATAGCGTCAAGGCAGCGCGAGATTGGCCGGCCCAGGTGCGCTCAAGGCCACAACC
CTCGTATTTTGTACCCCTCTGTCCCAAAAATTCTTGCCTTAAATTTATCTACATATAAAC
GTATCTAGTCACGTTTTAGTATTTACATACATCCATATGTTGACAAACTTAAGACAAGAA
TTTTAGGACAAAAGGAGTATCTGTTTTTTTCAAGTTTACGTTTTCTTTTTTCTTTTTTTA
CTTTACTTTTGTTCACTCTTCCAAATATGATAAGGGGACAATTAGGCATCCATCGATGGA
TTTGTAGTAACCATCCACCACCCTTTTAGCCATCCGATGCATACGCGTGCACCATCCGAT
CACCAGTTCGGTCGCCTCCGTCCAACACACAAAATCCTGAAACAACGCTTCAGTTGCGGA
AACAAGCACGCTGCTACGTCGTTCGACTGACGGGTTAAAATGACTGACGAGTCTTTTGCA
ACAAAAAATCATGTTGCGAAAACGTCCGTATATTTTTTTTTGTAATAGAATTTGTTATAG
AATATTTTCTGCAACAAGGATCGTGTTGCAGAAATTTTCAACAAGCGCTAAGTTGCACAA
GTACAAGCTAGGTGACCGTACATAAGAGGATTTAGATTTCAGATCATGCAACATATGACG
TGTTGCGGTACGCAATCTGCAANNNNNGTTAAGTTGCAGAATGACAAACTACATGAGTTT
CAATAGGACACGCGTCGCACGGACGAGATGGCGGACGCCCGCGTGCGATGCGCCGGCTGG
ACCCATATGATAAACATATATATTACAACAATAACTTTTCAACAATCTTTTGTAAAAAAT
AATAATGCATTTGAAAATTTTTAAATGTGTAAAAAAAAGTTCATCATGTATACAATAATT
CTATAAAAATTTCTATACGATGTGTGTGTGAAAAACGTTGATCATGAATTTAAAAATTGT
CAACCAAGCACTTAAAAACGTTGAAAAAGTATTTGATGTGAATTAAGAATTTGAAAAATA
TTAAATGTAAATAGCAAAAATGTTGACCATGCACTAAAAAAAGTTAATCTTGTACTCGAA
AAATGTTGAGCAAGCATTTGAAAAACGTAAAATGTGTATAGAAAAAATGTAGATCATGTA
TAAGAAAAATGTATACAAAAAATACAATGTATGTGAAAATGTATATAATATATTAAAAAA
ATGTTAATCAAGCATTCAAAAAATGTTAAATAAGTATTTGAAAAATGTTAAGTAAGCATT
TGAAAAATGTTAATGTGTATAGAAAATGTTTATAATGTATTCATAAAATGTAAATCTTGC
ATTTGAAAAAGTGTGGATCAAGCATTTTGAAAATGTTAAATGTGTATCGAATAAATGGTA
ACCATGTATTAAAATGTTAATCTGTTTACTCAAAAAATGTTACCAAGCATTTGGGAAAAT
AATTTCAACTGTGTATAGAAAAAGTGTTGAACATGTATTTAAAATGTTAATATTGTATTT
GAAAATTGTAATTAGGCATTTTTAAAATGTTAAAAGTGTGTATAAAAAATATTAACAATG
TATTGAAACAAAAGTTAAACTTGCATTTTAAAAATGTTAAACATGTATTGGAAAATTGCT
ATTGGCATATACGAAAAATGTAGAATGGAATCCAGAAGAAACATTAGACATGTGTTGCGT
TGAAAAAAATGATGAATACCGAGTAAGAAACATAAATGAAAAAAACTGAAGCATAATGAA
GAAAGAAAGATAACCCAGTGAAGAAACAAAAAGAAAATAAAAAACAAGAATATCGAAGAA
AACCAATGCGACTAAAGAAAAGGAAACAAAAATCAAGAAAAAACAGAGACAACCGAGAAA
GAAAGAAAAAAGTGAGTGAAAAGAGGAAAACCAATTAACATAAAATAGAAAACCCGTAGA
AAACCCTAAGAAAAAACAAAAAAGGAAGAAAAACAAGTCAAAAGAGATATACAGATACAT
CGAGCCATCCAGCCGGCGATTGAACGGGAAAAAAGAAAAGGGGTGACCTAGTTTACAACT
ATTGAAGAAATACTTGAGCAAGATGGAAGATATGCTTAGCTATAAGCGATATATAGTCTC
CACGGGGCGAGACAACGAGACAAGGCCTCTGCTACTTGGTTGGGTTAGACCCAAAGATGG
CCAAACAGGCCGGCACATCACGACACGACCTTGCCCATGCTAATCGTGTCAGGCACAACA
TGACCTAGAGAAGCCTGGTTAGTAAATGGGTAGTGCTGCACTCTCCATTCCAGGCATGGC
TTAGCTGCTATTCGGGTTGGCACGCCCCACTATTTTTCCTGTGGAATGATATGGATTTTA
TTAATCAAGGAGGACCATTACAATCCTACTGGCAAAGAATGCCAATTTCATCAAGTTCAT
TCTAAACAGTGCATGTATGCTAATATATGGCTTACTTTGTTTTTACTCCTACTCACATGA
AGTACGATCTGCTCACGACCAAGCGATATGGAACTTTTTATCTCACCAATCAACACTACT
ACACACGATCTATTCTGATAAGCCGCGTTGATCATATTAGCAACAATAAGACTATTTTTT
ATGTATGAAGGCATAATACTCGAGTTAAGGGTTACAACAATGTCGTCCATGCACGTTGCC
ACCTCCACTTCAGGAGAGCTTGAGAGGGACGTGAGGAACCTCCAAGATGAGTAGATGATT
GCAAAGTCGTGATCTCATAAGATCATCCCGGCACCTCCTATATTGTCCTCTTCACACCAA
GCACCATGAACAGTCAACTTGTTCCACCACACCGGTATCCGTGAGGTTGTACGCGCTTCT
AATGGAGAAAATTGAAAGCACATATACTCCATTGAAGGTTTTGATAATTCATGGCAACAT
ACATTATCTCTTGGACTAATGGTTTTACCTAGTGCTTCAGATTTAAGTCCAAAAGACTGC
AATGGCTGGAAATTGTGAGGAGGATCCCCAAGAAGGAAAGCATAGGATTGGTAAAGCTTC
AAGCTTCAAGACTCTGCATTTCATACTTATGTGAGAAATCGCATGTTGAGTTCATGGGAA
AGCCAACACTATTAAAAGGGGATGAGGTATCTANNNNNATCTGGTTGCTCAAGTGCTTAG
AGGTTAGCGATAAAAAACCCTCAAGAATTCTCCCACAATATATTCTGTCAAAACCCTATC
AGTCAAATTCGGTGCCACCAACATTTCCAAATCGGTCATACCGAGTTTTCCTTAGACATA
TCCCAACGTCAAACCCTAGCAAATCGGTGATACCGAGATTCGGTTAGGTACAACCGAAAA
TAGTGACCAACTTGTTGTTGCCCATTTGCATAAAGTCAGAATTTCCAATTTTGCAAATCG
GTCTCACCGATTCTTGGTACTGTCTAGACCAACCGAAGTGGTCTCACCGAGATGCTGTAT
ATCGGTATCACCCAAAAGCCGAAAGTTGCAACTTTTTGAACTAGTCAGCATAACCGAGTT
TTTTACTTTAATAACATAATTGTTGAAGTCATTCACATTCATAATTTTGAACATTGTCAT
GATCACAATTCTAAAGAATCTCTTGATCTTTCTGACGAGGATATTCCATTTGATGATGAC
AATGTGGAACATGGCTACTATGATGAAGATGAGAACTTTGACATCGAATATGAAAAGACT
ATGAATAATCTAAGTCTCATGGCAACATCAAGGATTACACGTCCATAGGAAAACAATGGA
TTCTCGATAGTGGATCCACCGATCACATGACCAGAGATAGAGACATGGTTCACGAGATCA
CACCAAACCATGGACCGTGCAGGTATGTGACCTTTGGAGACAACTCCAAGGGTAAGGTAC
TCGGTCTTGGTAAGGTACCCATATCTCATGATAGTTCTATTCAAAATGTCATGCTTCTTG
GCTACAATCTTCTTTCCATATATAGACTAGCCGATTTCAATTTCGTTGTGCTATTTACTA
AAGTAGATTACCAAGTGTTCTGTCAAGACAACCATAACATGATCTTTACTTTTTTTGTAG
AGGTGATCTATACATTGTCGACTTGAGTAAAAGAGCCCAATCTCGTACTTGTCTTATTGC
AAAATCTTCTAAAGGTTGGCTATGGCATAGAAGACTAGGACATGTTGGTATGGGTAAACT
AGACAAGCTCATGAAAGGTGATTCATATACTTGGTGTTAAAGATGTTATCTTTGAGAAAG
ATAGACTTTGTAGTGCTTGTCAAGCACGAAAACAAGTGGGTGGAAGTCACCCCATTAAAA
ACATCATGACTACAAGGATACCACTTGAGATGCTTCACATGGATCTCTTCGGCCCCAATG
CATGCAAGAGCCTTAGTGGAAATTCCTTTGGTCTAGTTATAGTTAATGATTTTTCCAGAT
TTACGTGGGTATTCTTTCTTGATGAAAAGCCGGGGTACAAAAGATCTTCAAGAACTTCGT
TAGCAAATCCCAAAATCAATTTGAAGTGAAGATCAAGAAAGTTTAGAGCAACATTGGATC
TAAGTTCGAGAACACTAATGTGGATACTTTTCTTTACAAAGAAGGTATCTCACATGAGTT
CTCGACTACGTACACACATCAACAAAATGGAGTTGTTGAGAGG