| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_43251
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_59082 |
1 |
700 bp |
AK253004.1 |
Not available |
Available |
None |
CDS Structure of MLOC_59082
Contig Sequence (7756 bp)
>contig_43251 7756 assembly3_WGSMorex_rbca.fasta
TTGTATCGTAACTATAAATTCTCAAATTATAGACATTTTTTATAAATTAAGAGTGTGTGC
CGTGTGGTATTTCTTTCTNNNNNNNNAACGCATGGGCCCTTTTGCTAGTCATTGCCTAAG
GGGAGTAGCATCGATGTGGCATCGTCCAGGTGCGGCTATATCCCGCTCCCGGCGGGACAG
TAGCTAGCATCGCCTCAGGGCGACATTACACGGCTGGGCCAGTAGCCGCGGGTGATATTT
TCCTCCAGTTTTTTCTTCACATTTTTCATGTTTTCTTCATTTTTTTCTACTTTTTTTATG
TTTGGAAAATAGTCCAAATATACACATATATATTACAAATCTAGTTCACTATTTTTTTTA
AATGTTAATCGTGCAATTCAAAAGTATAAAAATATATATAGAAAAATTCTTCTAAAGTAT
ATCAAAAATGTTAATTATGTGTTCAAAAAACATTTATGAGCCTTCCAAAAACCTCAAGCG
TTAGTAAAAATGTATCTGTATTTTAAAAATGTTTAAACAGTGTAAAACAAATGCTAGTGT
GATTAACAAAATGTTCAACATATTAAAACAATGTACATTAAATTTTCAAAGATGTGTCCG
TCACATTTTGAAAAGGTATATGTAGAAATGAAAGAAAATTTTGGATAACTTAAAAAATGT
TTTGTCATGGTTTACTAGGCTAGGCAAATAAACCAAACAACTAGCCTTGCTCCTATGAGC
TATGGCTCAAACGTGCTACAATCCTATTGCCTAGCTGGGCATGTTTAGCGAGAGAACCAA
ACACACCCAAGGAAGGAAAGCGCATGACTAGACCTAATGGGCTGGCCCGCGGGTGATTCC
TCTAAGCAATCAGTATGGTTGATATATAGCCCCTTATTTTGGGGAACTCCTACCTGTCGC
TCGCTGTAGCAGCGAGTCCCTCCCACGCACAGGAGACCCCGATTGCGCCGGCCCAGTATG
GGCGCACGACAACTGTTGCCTCTTTTTTCCTTTTCTAACTTTTTATCTATTTTCTTTTTT
AGCTCATTTTTCTTCCCATTTTCCCTTTTTTTCTAATCAAAACGAACAAACGTTGACTTT
TTAAATCATTTTTTGAACACATGAAAGTTTTTTATAACAGGGAACAAACTTGAAAACGCG
AACAATATTTTGAAGGGCGGACATTGTTTCAATCTTGAGAACAAAATTTAAAAATGAGAA
CAATTTTGAAAAATCCTGAACAAATTTGGAACCGCAAACAACTTTTTAAAGCATCAACAT
TTTTTTAATTTTAAGAACACAATTTTGAAACGGAGAACAATTTTGCAAACCCCGAACAAA
TTTGGAAGCGTGAACAAGTTTTTAAAAGCACAAACATTTTTTAAATCTTGAGAAGAAATT
TTGAAAACGAGAGCAATTATGAAAAATCCTGAACATAAACATGAAGAATTTTTAAAAAAC
GAATATTTTTCAATTTTGAGAACAAAATGCGAAAAACAAGAACATTTTCTGAAAAACATT
TCAAGAAATCCAGGACATTTTTCCAAAATCCGGAATTCTTTTCGAAATTCCAGAACATTT
TTTTGAAAATACAGGAAAAATAATAAATCGCAAAAACGTTTTTCCAATTTGAGAACAGTT
TTTGAAAATTCCAAACATTTTTTGAAAATCCAGAACATTTGTTTTAGAAAAAGCAGAAAC
ATTTTCCAAATTTGAAGTGCATTTTCTCAAAACTCGGGACATTTTTATAAAATCCAGAAC
ATATATCTTAAAACAAAAACATTTTTTGAAGAGGAATATTTGAAAAACCTAAAAACAATT
TAAAATGTAGAACATTTTTTGAAAATCCAGAACATTTTTGAATCAAAAAAAAAAAGATTT
CTAAAACCCGGAACAAATTTGGAAGCGCGAACACGTTTTAAAAAGTACGAACATTTTTTG
AATCTTGAAAAACAAATTTTAGAAATCCGAATAATTTTGAAAAATCCTGAGAAAATTCAT
AAACATGAACTTTTCTTGAAAATACGCACATTTGTTTTAATGTTGAGAACTATATTCGAA
AAAACGAACATTTTTGGAAAAACGTTTAGAAAATCCAAGACATTTTTTGAAATTCTAGAA
CATTTATCTGAAAATCAAAAACATTTTTTGGATTTCAGGAACAATTTCTAAAAATTGCGT
ACATTTTCTGAAAATGTAAAAAAATTTGAAACAGAAACCAAAAAACTAAAAAATAAAGAA
AAAAAAAGGTTCAGGGAACCTTCTAGAATATGCCCAAAACTGAAAAAAAAAATCGTCTTA
CAAAGTGTAGAAGCTTGCCAAAACCGGGATCACTGCAACGGGCCGGCCCAGATCAGGTCG
TTCCCTCTTGATTCGTGTGCGAAGCCCCGGCATCTTGACGCAAAGAGCGGCAAATAGCGA
TTTCCCTTATGTTGAAGCTCTTTGCGTCAAATTGGGGGCCGCATGCACAGAAGTTAGCCC
CGACTGGCCGGGCCGTCAAGCGGTACCATAGGACCAAAAAGATGGCAAAAAACAAAAGCA
GCATGATTTTGGGATTCCAACAGTAGATCAACTGCTTCCGACCGCACACACATAACCAGT
CCAGTGCACTAGTATGGTTCTTACAAAAGCAGCGCATAATTTTAAGAACTAAATCCCACT
GGACTACAGTAGTGAATAGGAATATCATAGCGAAGCCAAACTAGTTGCTGCAGTGAACAT
TTTTATAAAAGTGTTTATATTGAAAAAGTGCGAACAATTTTTATATTTCTGAACAAATTT
TTGGAGATAGGAACATCTTTCAAATATGTGAAACAAAAATATTGCAAAAATAAGAATTGC
TTTTCAAAAACATTAACCATTTTTTGAATTTGTGAACAAATTATGAAATTTGGAAAGAAA
AAAAAGAAACTGTGAACAACTTCTGAACTTCTGAATGAATGTTTGAAAATGGAATATTTG
ATGATATTACAAAACAAAATCAAAACAGGACATTTTTTCAATTAGTGAATATAAAAATTC
AAAATGGAATATTTCATTAAATTGCGAAAGGAAAATTGAAACTGCAAACATTTTATGAAA
TACTTGAACATTTTATGAAACACGATCATTTTTTAATTTCTGAGCGAATTTTGAAACCAT
GAATGTATTTTTTAATTCCTGGAATTTTTTTGAACGTTGAACATTTTCCAATTTGTGAAC
AAATTTTTGAAAAAAGTAATTGTTATGGAATTCCTAATATTTTTAAAGTTTCGAACAAAA
TTATGAAACAGGACCACTTTTGAAAATTCCTATACATTTTTTAAACTCGGACCTTTTCAA
TTTATGTAAAAAATAAAAATTAATGAGCATTTTTGAAAATTTCAACATTTATTAAGAAAA
TAGGAACAAAATTCGAATTTGTGGCCATTTTTTAAAAATGCGGATATTGTTCAAAACAAT
GAAAAAAATTAGAAAATATTCAAAAAATAAATTGAAATACTGAACAAAGTTTTGAAATAC
TTTAAAGAAATAGAAAAAGGAAAGAAAAAACATTAAACAGAAAAAAAGGAGAAACAAGAA
ACAACAACAAAAAAGGAGAAAAAAGGAAAACCTGGTTTAGGAACCTTCTAGAAGGTTACC
AAAACTGAAACCAAGACCGGAAATGCCGAACGCGTTAACAGGCCAGCCCAGTTCAACGCT
CGCTCGCGATCTCTTGTGCAATAGATCGAAATATGACGTACGGCGAATAGGATTTTCCCG
TCCAGACTCGAGATTGAGTCAATCAAACCGTAACCTATTATTTCATGGAAAATAACCCAG
AAGATGGGCTGTTTGCTCTTTTGTTATAAAAAATTCTTCAATCACCAAATAGCTCAAGCC
CATTTATTCTTTTGTTCCTTTTGAATGTCCAGCCCACTTAGTTTTTTTTTACCGTCGTCG
TCATCAGCCTAACCATCCTCATACTTACTGGGGGAGAAGCAGATTAAGGATTATTCTCTT
AATAAAAAATAGTAAAACAAATGATTGTTCTGAACTTTATCGTAAATCAAAGTATAATCC
GCCAAACAAAAGGATAAATATGTGCATGACCCTGAAGGTGACGTACCTGGCACGCCATCA
TAGAGGAACATAATAACTTAATCTCTAATGAATAAAACAGTACAAAAGCACACACAGATT
CTTGCATCATTTAGCTAATAGAGTAGTGTCTGCATAATTGCAGGGACAAGCTTAGTCGAA
TTCGTTACCGCCCTCTTATATATCTTCAAGGGAGTCGAACCCATTATTGCTTAAAAATAA
TGACAATTAAGCTTGGCTTGAGGATGACGACAGCTTCGCGTAACGGAGCATGCTGCAAGA
ACTATATTTGGTAATGGAAAACGAAATGGAGCGCTATATATATATATGTTCGGTTGACCC
AACACACAAGATATGCAGATTGCTGTAATTATATATGCTAACCCTAAACATTGGCTAGCT
AGTCAATAATGTAGCTTTTGTTTTGTTTTCAAACGCTTACAAATTGAAGTCAGCCAGTAT
CCTAAATTAAGGTAGAGACCTCTCTGTTGCATCATTGAACCAGTAGTGCTGTATAATTGC
ACAGGCAGGACTGCAGGAGCAGTCATATCCGCTATCACCCTCAGCCCGTTCATATATTTG
CTATAAATGGGATCCATATTAATAAAAATGATACATCCGTTTTAGGGATGACTAATATGG
ATGGAAGTGAGTTGTAAAATTTAGACCTTAGGCGTTGTGAGGCTGTTGTCAGCTTGACGT
AACAAAACATGGATCAAATCCTGGTGTTCGCATTTATCCTAAATTTATTTCAGGAATTTC
GGCGATGCACGTTCAGTGGAAGAAGACGTTTTCGTCGACTACGAGACGCTTTTACGGTTA
CTTTGTAAAATTTCAAGATAATATGCCAGCTTGATTCTCAAATGTGTTCATAGAAGTATG
ATGTGTGTGTGCCTGTTCGTAGGATGATTATATGCGTGTACATAAGCGTTTTTGTGTCCG
TAGTGTGTTTGAAATACACATGCTGCAGAATCTATTCAGAGAATGAAAGTTTTTTTTTCT
CTCTTTTTTGCGAAAAACAAAGAATGGAAACCGGCACGAGCTAACAATCTCAGCAGAGCC
CAAAACACTAGCTAGCCAACAATATAGCTGACCAGCAATTTTGACAGACTTTTGACTAAC
CTACTGAAGTCCGCACCTATCTGCATACATACAGGACATGTGTTCTCTGATGGAATTTTC
TTCCGTTCTAATTCGCCAAGAGAGATAAAGCGAGGAAACGGTTTTCGACAGCAGCATAAA
ATCGAGGAAGAAGAGAACTTCCTTTTCCATGGCAAAAAACGAAAAAGAGACAAGAGCATA
TATCATCGACCTGACTTTTCATCAGGAACACCACTGCACATGACACGTGGTTTTTTATTT
TGTGATATGAGCTAGCACTACAGTAAACCAAGTGTCCCTACAAAAAAAACACAGTAAACC
CAGTGTGTCGTGATCAGCCGACGTATCTGTCCGGACAAAGGTTCGAGATCCCGGCCCTAG
GATAGGATGATATGAGAGCTCGACAGAGCTGCACTCCCTCTATAGGATATAAGATCATAT
CATCGACTTAGACTTTTCATCAGGAACACCACTGCACATGATACGTGGTTTTTATTTTGT
GATGAGTATTCCCTCTATAGGCTGAGAGCTCGACAGAGCTGCACTCCTCATTCAAGTTCA
CCGTGCCGGAGGAGAAGTTTCCCCTTGGCCTCGCTTTGATTAACTTGCAAGATGGCTGAG
CTGCCTAACCCCAACCTAACCTAACCACAGTGCCCCACCCGGGATAAAAAAAAGGGTCAC
CATCTAAAGGCAACGATTTCATCCATCCTTCTGCGTCGGGAAAACAAATTGAATTCAAAA
TGGTTTCACCTGAGCAGATCAACTTTGAAATGTTCCCCCAGGTTTTTCTTTTTGTTAGTA
TCATTTTCTGTCGGGTACTCTTGCAAAGTACTTCCTCCATTCTTTTTTCTAAATGTAAAT
CTTTTTAAAGATTTCATTACGAATTACATATATTTAGAAACGCAGGGAGCAGCAGAATCG
TTGTACGTAGACTTGTTCAGTGGTGGAGCCCCCGTGTAGTCACGGCGGGTTGTGGCTCAT
CCATAATTTAAATATATTTTTAATATATACTCCCTCCGTTTCTAAANNNNNGTCTTTTAA
GATATTTTACTAGAAGTCTACATACGAAGCAAAATGAACGAATCTACACTCTAAAGTATG
TCTATATACATCCGTATGTAGTCTACTAATAAAACCTCTTTAAAGACTTATATTTGGGAA
CGAAGGAAGTACTTATTTAGTCCAAACAACCAGGTTGAGTTTTTTTTTTTCTGAGGTGTG
CACACCCTTCAATTTTCTTCTAGCTCCGCCACTGGACTTGTTTAACACGAAAGACGGGCA
TGCGCCTGACTTAATTCCCAAGTCCATTCTGCACTGCCCCCTCCTCCAAGCAACCCAACC
CAACCCCGGCAAAGCACGTGTACGGACCATGAATCCGGCGACAACGCTGGCTGGCAAGTG
GGCCCCACACCGCCCCTCCCTCCACCCACGCCTACAACTACAAGTAGCCAAGCCATGCCG
CCCCGCCTACCTCAGCTACAAGCGCACACACACATACATATATACACACAGCCAGAAACG
AACGAGCACACACGCGCACGCGAATTCAAGGTTTTGAGATAGCTTAGCTAGCGTCCATGG
CGTCGACGACGACGATCCAGTCGGTGAAGGCGCGGCAGATCTTCGACAGCCGCGGCAACC
CCACCGTCGAGGTACCCATCGGGAATTCATCCACTACTTGGTCTGTTCTGATTTCTGAAT
ACGCTCCACCGTTTGTCTGAATTTGATCTGGGTTCCATTCAGGTGGATATCGGGCTCAGC
GACGGGAGCTTCGCCAGGGGCGCCGTGCCCAGCGGCGCCTCCACCGGTACCTACCCCTAC
CCCTACCCCTGCCTTCTCCTCCGCTCCGCCATGTCTTCTCTTCACACTTCAGTTGTTCAT
GACCAGGAATCTACGAGGCCCTGGAGCTGAGGGATGGAGGCTCCGATTACCTCGGCAAAG
GAGTTCTCAAGGTCCCTACTTCACCAGTCACAGTCAATTCTTGGCTCTTGCACAGATGAG
GAATTAAGATCAACTCCATATATACTCGAGCGCCGCTGACCGGACCGTGCCATATCTTTC
TTTCAGGCTGTGAACAACGTAAACGCCATCATCGGACCGGCGCTCATCGGAAAGGATCCG
ACGGAGCAGGCCGACATCGACAACTTCATGGTCCAAGAACTCGACGGGACCTCCAACGAG
TGGGGCTGGTGCAAGCAGAAGGTACATACTACTGCGTATATACTAACTCTTTGCATAAGT
GTTCAGAAAAACATTTCAATAGTTCATGTACTGATGATTTCGTTTAAAAAAGCTCGGGGC
AAACGCGATCCTCGCGGTGTCGCTTGCAGTGTGCAAGGCCGGTGCCATGGTCAACAAGAT
CCCTCTTTACCAGGTCTGTCAAAAACTCAACTACCTGCCCAGGCTGGCCATCGGCTGAAT
TGCTAGAGGATGTGGTGCTTAAGTTGGTATCATCTGTTTGCAGCACATCGCAAACCTTGC
TGGGAACAAGACCCTCGTGCTGCCCGTGCCTGCTTTCAATGTGATCAACGGAGGTTCTCA
CGCCGGGAACAAGCTTGCCATGCAGGTAAAATTGCTTGCAGATCTAGCATGAATGGAATT
TCTGATAACATGTTTC
