morexGenes - Barley RNA-seq Database

Contig contig_43249

Source Contig contig_43249

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_43249 (4810 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_43249

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59077	2	1248 bp	MLOC_59077.1	Available	Available	LOC_Os07g44744.1, FRAME:+1, EVALUE:6e-15, 13107.m04710 protein expressed protein
MLOC_59078	3	2241 bp	MLOC_59078.2	Available	Available	LOC_Os08g34790.1, FRAME:+1, EVALUE:0.0, 13108.m03641 protein AMP-binding domain containing protein, expressed

CDS Structure of MLOC_59077

CDS Structure of MLOC_59078

Contig Sequence (4810 bp)

>contig_43249 4810 assembly3_WGSMorex_rbca.fasta
CTATAGCACCTCCCACACGCCCGCCCCCCCCCCCCCCCCCCGAGCGACTCGTCGACTCAA
AAACCCTTGTTCGCGAGCAATGTAATGTCCATTCAGGTTTTCAAACTTTAAGAATTCAAC
TTCATTTCCAATAAAATCGAAACTATGTTTAATTACTTCTAAAAAACTATTTTTACTTAA
AGCGGCATGCAAAGATCTGTATTTTCCTAAACTACCAGCCAAACTATGTTATGGATACAC
AGTCCTTTATATACCGTACTAAATTAGTTGATTTTCCCCTAATTTTCAAGCTTATGACAC
TTCCACACGTGGTCATAGAGGTTAACCGAGATTTAGGGAAGCCAGGGCAAGGATAGCAGA
GAGTGTGCTTGACCAAAATTTTGGCTAGCCAGGGTAATGTTTGGTGAGGCAACCCTGGGC
TCAAACCAAACAACGAATAACAGAGGGTGTGCTTGCCAACTAACAAGAAATGGCAGAAAA
TAGACTCAACTATCTCTGCTAACATGACGTAACACACCAGTATATTAATTATGAATTCTG
TGGCATGTTCGACAGATCTATTCCTGCGGAAATTGAAGATGGCTGCTGAGAAAAAGGTAA
CCTTTCTTTTGCTTTTATATCAGGAAGCTAGCAACTCAGCATAAAGTTGAAATATTTAAA
AAGCATTACGTGGTATCTTGTGCCCTTTATATTTATTAACAGATTGTTTGAATACATGAA
GTATATACTTACGGATGGAAACAAAGATATCATAAACATGTCACTCTCTGACTGGGAAAT
TGGTAGTAGATGATAATCAGGCAAAATGCTTGTGAGCTTCGTTAGCATGCTTGGCCTTTG
TTGGATATATCCTAGATTACCTTTTCAATTTAGTAATAGACCTACTGCAGCTATCTAGAA
TATATAAAATACAGTTATCGTTTTGCTGCGGCACTGGATGGAATAAATATTAGGACAAGG
GGGTGTATGGCTGATTCGGTTATTCTAGTGCTTACTTTCTTCATTGGGTCTCAGGTTGGA
GCAACAAAGGCAGAACTATTCTGCAAGACATTCGAAGAAGCTCATGAGAGACTTGTATTG
ACTTCTCTTTTCCCGGAATTTAGTCCTTCCTAATAACGTCTCTACCATCTTTCTTCCTGG
CGATCTTATGGGATTGTTCTGCTTGGCCAGGTTTACAAAGAATTGGATCTGGATGCTGCT
CAAAGGTTCCTGAGTGCCTACAAGAGTTGATGATGAACTGTTGCTAGATGCCTAAAAGAT
TTGATTTTTATTCATCTGAAACTGCTGAAGGTGTGATGACATTAAGATTTCTGATATTTC
CTTTGTGGTTCTCATCTTCTGCGAATCCATGTAGACAGCCCTGGTCAATCAGCTACATTA
TTCAGAATCTGATGTACTGTGTTATCCTTAACATAGACCAAAGAAGAAAATGTATTTTTC
TTCCAGCTCTGATAAATTCGCCCTGTTCTCCAGAGATAGAACTAGCATGTTTCTGCTGTT
TCCAGTTACAAAAGGTCTGAACCGGCAAAAAAAATAAAAATCCACGACTCTGCAGATGGG
ATTTTTCCAGATCGTCTTTTTTTCTCATTTATAATTCAGGCACACTACGCTTTTCTATGA
TTTTAACCACGGATAATGATGAACATACCCCATGCCAGCATATACGGATGTACAGCATTT
TGGAACAAAATTTTACCGAACTTGCCACGACGTCGCAATGGTAATTCCAAAAAAGTAAGT
ATATTGTCTCTTCCAGTTCACTGATATACAAGTGCAGAAGTGCGAATACATTATCTGGAG
TGTATCCAGAACTCCTTGCCCACACTCAGTATGCCTTGTACATTGGCGACTGATTGATCT
CACACTCTTTTCGTGGTATTTTAATTAGCATCACGAGAACAAAACAAAAAAAACGAACCG
AGTATATAGTAGTATTTCGCATGCACAAATAATCAACCACCATCAGCACGCTCCGGCGGC
CAGCTTTGCTCGCAGGTCCTTCCTCAGGATCTTCCCGGACGGCGCCTTGGGGATGGAGCT
CACGAAGAAGACCTTCTGCAGCCTCTTGTAGAACACCACCTGCTTCGCCACGTACTGCTT
GATCTCGTCCTCGGTCATGTCGGCACCCTCCGAAGACGACGGCACTACGAACGCCACTGG
CACCTCGCCGCTGGCATCATCCTTCATCCTGATCAAGATAGCGGCCGTCGTTAAGAAATC
TGAACCCTTCTTACAGCTCAATAAGGACCCATGCATCATATGAATTCAAGTTCGTGCCGG
AGTAAGAAGTTGGTGCTTACGGGACGACGGCGGCGTCGGCGATGCCGGGGTGGGCGATGA
GCATGGCCTCGAGCTCGGCGGGGGCGACCTGGAACCCCTTGTACTTGATGAGCTCCTTGA
GCCGGTCCACGATGAAGATCTCGTCGTCGTCGTCCACGAACCCGACGTCGCCGGTGTGCA
GCCACCCGTCCTTGTCCACGGTCTCCGCCGTAGCCTCCGGGTTGTCGAGGTACCCCTTCA
TGATCTGCCTTCCCCTGATGCAGATCTCCCCGGGCTGGTTGCGCCCGAGGCACAGCCCGG
TCTCCGGGTCGACGATCTTGAGCTCCGCGTTCCTTACCACCGTGCCGCATGCGCCTGACT
TCACCGGCGACGGCTCCTTGGCGAACGCCATGCACATCGACAGCACCGGACCTGCCTCTG
TCATCCCATAGCCCTGCCCAAACGAAATGTCAAACAAATAAGTATGGACATCGTCAAGTC
ATGGTCAAAGCTCAAAGCACGAGGAAGGAAAGGGTAGGTATATGTATGTACCTGTCCGAG
CACGGCATTGGGGAGCTTGGCGTGGATGATGTCCTGCAGCTCCTTGCCCATGGGCGCGGC
GCCGGAGATGACCATGCGGACGGAGGAGAGGTCGTGGCGGTCCATGGCGTCGCCCTTGGC
CATCTCGACGACGATGGGCGGCACGAGCGGCGCGATGGTGATGCCGTGGCGCTCCACCAG
CTCCATCATCTTGACCGTGTCGAAGCGCTTCATGACGACGAGGGCGGCGCCGGCGCGCAG
CCCGCAGAGCAGGATGGAGTGCAGCGAGTAGACGTGGAACATGGGGAGCACGCAGAGCAC
CACGTCGTCCTCCCGGAGGTGGAGGTTGGGGTTGTCGCCGTCGACGAGCTGCGCGACGCT
GGTGACCAGCCCGCGGTGCGACAGCATGACGCCCTTGGGGAGCCCCGTGGTGCCCGACGA
GTAGGGCAGCGCCACCACGTCGCCGGCCACGTCGATGGGCGCCTCGTGCAGCGCCGAGTC
ATCGGCGGCGGCCAGGTCGGCGAACGAGGCGCAGCCCTCGGCGCCGTCGCCCGTGGCGAC
GATGACGGTGACGCCCGCGAGGCCCCGCGCCTTGGCGACGAACGCCGGCTCGGTCACCAC
GACGGTGGCGCGGGACGCCGCGGCCTGCTTGGCGATCTCGGGCGGGGTGTGGAGCGGGTT
CGCCGTGGTGGTGGCGGCGCCGAGGCGGGACGCGGCGAGGAAGGCCAGCGCGAACTCGAC
GCAGTTGGGGAGGAGCAGCATCACGGTGCTGCCGTGGCGGACGCCGAGGGCATGCAACCC
GGCGGCCACGCGCCGGGAGAGGCGGTGCACGTCGCCGACAGTGAGCGTCTCGCCCGTGGC
GCCGTCGATGAGGCAGGCGCGGTCGCGGCGCTCGGCCAGGCGCTCGAAGACGTAGTCGTG
GAGCGGGAGGTGGTCCGGGATGGCGATGTCCGGCAGCGTGGAGCGGAAGACGACCTGCTG
CTGCTGCTGCTCCGGCAACGAGCCCATTTCTTGGCGTCTGGCTTGGATCGTTTTGAGCTG
AATGGATTGGTTGGTGGAGCTGTGGGATCAGTGGAAGCACGGACGGCTGGTTGCAAGATG
GAGTTGTCCTGAGGAGTCGAGTGGAAGGAGCTCGCGGAGTGGTACTTATAGTTATAGATA
GATAGCGGAGGGAGTCGGTGGTGTTTGGTGGGGAGCTCGCAGCTGGACCTGGTCCAGTTT
CGTGGAAGAAAGCTCGGTGCGACATAAGACATGCATTTCACACGTGCGAAGGAACCACAC
CTCCAACGTACGTACGTCGGCACATGAACGAACTGCCCGTATGATCGACATAAAAGGGGT
TTTTCCCCTACTTGAGTGGGAATGTGGGATATATATATATATATACATATATAAGGCGCT
CCTTCCATTTCTATTTTGATCAAGCCTGTAGATTTTTTTTTTTACCAAGATTGAAGTTTG
TTATCGTAAATGTTTGTATCATGTTGTTTTCTGTAAACTTAGCCAAGCTTTCTAAATTTT
GACTTCAGTGAAATCTTATATGTTAAAGTCAAAGTGAGTACTACTCCCTCCAATCCTATA
ATATAAACTATAGATAAAAATTAAGCAAAAACTTGATTAATATCACACTCTAGCTTTATC
CCTATCTTCAGGGCATGTGCAGAGAAAGAGTAAGTTGTTTCTTAAATACTATGATGATAG
TCAATCCATGTACCATCCATTGTCTCTTAAGTTCTTTCTGTTTTGGAAAAAAATACAGCT
AGAGAAACATCATTTGATGAACTCACTAAAGGCTGGAACTTCGAGCCTTACTCTTGGTGT
AAGAGTCACTTTTCTTCCCTTTTATTTGGAGCAACTGGTAGGAGCTCTGTCAGTCATTAA
AAAAAAACTAGTTAATACGAAAAACTAGTCGAAAACCGAACTTTTCTTCTGTTCTTTCTA
GTGAATTTGCATTATTATGGCTTTGTGCATTCTCGGTAACTAATTAGCCCAAACGAGCTC
ATCGCTTTCT