morexGenes - Barley RNA-seq Database

Contig contig_43248
Source Contig contig_43248
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43248 (6739 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_43248

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59075	2	2614 bp	MLOC_59075.1	Available	Available	LOC_Os01g49200.1, FRAME:-2, EVALUE:0.0, 13101.m05115 protein microtubule associated protein, putative, expressed
MLOC_59074	1	396 bp	None	Available	Available	None
CDS Structure of MLOC_59075

CDS Structure of MLOC_59074

Contig Sequence (6739 bp)

>contig_43248 6739 assembly3_WGSMorex_rbca.fasta
TCGGGCCCAGGCGTGCCGTGCCGGGCATGGCACGATTATGGTGGGCCGGACCGTGCCGTG
CCAGGCCGGCCCGTTTGGCCAGGTCTGCTCTACCTACTTATAAATACTCCCTCTGTAAAA
ATAGAGAACTCTTATATTAGTTTACAGAGGAAGTATTCATCAAAGAAAATGTGCATACGT
GTGCTGTGAAGTGTCCGGCCTCTCTAACTTGAGGAAACTTGCAGTGCTTTTCGACGCTTG
TAACTTTTTGCCATTGCTGCAGTGGCTTTGAGCAGCAATGCATCGGGCTTTCTGCTTGCA
CCTGGCAAATCAGGCAACATGTTGCACGTTTATCTTTTGGTTAACCACAGCTACTGGCAC
ATGAAACATCCAGTGCTGCCAGCAATAATATGTTCAATTGTGTAGGTTTACGTCACAAGC
AACACGGATATATAGTTTAGCGCATCGGTCGACCTGTAGAAAGATATCTTCTGTAGATAA
ACCAGTATGCATTTCCAGTATCACGTACCATGACTTGCTAAACATCTATAGCAGAAGCCA
GCAATCCAACCAACTAAGCCAGCATGACATATGGCTGTGACTTCGATACAAAAAAAAATG
TGTCTTTATCAACTAAGCCAAGCGTCTCCCACAAGAGACGCCTTGCCATGCCAGATGACA
TACTTTCAGCAACCTACCCTGCATTCCCCGGCATTCCCCAAGAGTCAAGCGGCGTGCGCA
GCGAGATAGGCAAGACGCCTCTCTTCAAAGGAGTACTCGGTGCCCTCTAGCAAACACAGC
TCCGGCTTGTCATTGGAGACGCAGATAGGTGCAGCTCTTGCGGCAGTCAGAGCAGGCGTT
GTGGACATTTGCATAGGAGAGATCACCATCATCGGCGTCTTAGGAGTTGGTGCTGCGAGT
ATTTTGGGAGTTCTGTTCTCGCCTTCGGTACTATTGGAGGCAGACCGCACGGGCGTCGAT
GGGATGCTATTTCCGGGTGCGATCTGCGTGAAGGGTTTGCGAAGAGTTTCAGTCTCACCA
AGAGTACTTGCCTTGAAAGATAACTGCTTGCATCGAGGGTTGGCAGTGCCTTTGCCTCTC
CTACCTGTAAGCGTTTTTTTTGTTTTCATCAGACATAGTCCGTTAATTTGAAAGTAAAAA
AACTGAACAATTGCATCAGCTATGGTTAAGTGAACTTGCCAGGGGAGAGCGTGCCACTAT
CTTCTGTCTTCTTGGCTGAACGTATGAATCTTGACTGAGGTGTCACTAATTTTGGAGTTC
GCACTGGTCCTCCGCCGACAGACAGCCTCCGGTTTGCAATTCCCGAGGAGTTTCTGGTAA
GCTTGTTCCCGCTATTTAACTTTGCAGGGCTTGGCTTTGATCCATACAGTGTCTCCTGCT
CGGCTTTGAATCGATCCTCAAGCTTCTTCTGATCCTGCAATTTCTCACCCATCAGATATC
ATCTGCAGATGAAGACAGATACAAGTGCAAAAAAGTTTCAAAATATGAATACCCTTTGCC
TCTTCTTTTCCTGCTCCTTTTCTTCACGAACTATCCTATAATCATCAAGCATAGACAAAA
GACTAACCTGAAAAGGTTGAATGGCATGAACTTTTGACAGTATAGAAACAGATATTGTGT
TTACTCACAAGAATAACAGTGAAATTATGGATACGTACACCATCGTAAGTAAACTCAGTG
CCCCTTTCTTTCTCCCAATCAATAACTTTATTTGTAAGAAGGTCTACAATTCCTGCTCCA
TGCAACAAGAAACAGATCATCAACAGCATTTTAAAAATAACAAGCAGAATATAGTGTACT
TAGTAGCGTTGTTTTACCTGGTATCTTGTTAACCAAAACACGGGCTTTTTCAGCTCTCTT
GAGCATAAAATGTGCACCCCTCCCAGCATTATATCGGTTATCATCCTAACATGATATTTA
GATAGTGAAATTAGTAGGAGTTGATATAGAAAATGTTGTCATATCGCCTGGATTAAGTCA
TCAAACACAACCATACTTTGCTATAATCCTCTAACCAAGCTTCCTCCTCACATGCATTTA
GCCACCTTTCAACTCGCTCAAGTATATCCTTCCTGCTAAAAGCATCTTCTTTAACTGTTG
CGATGTATGCCTCGATTTGTTCTAGAAGAAGTGAGGGGTCAATAGCACCTGCAATGAAAC
AGCAAAAACATTTATGTTGGATATTACAACATTAATAAATGATATCAACAAACACGTCTG
TTTGTATCTGAATGCTGCAGCAAAGAAAATTACAAGGAAAAAATCCTTATTCTGCCTAAT
GCACCAAAGCATTTTAGAAAGCTAGAAACATACCTGCTTCAATGGCCTCGATATTGAACT
GAGTTGCATAATGTTCATCTCCAACTAAATGTGCGCGTCGACGATGCTCTTCTAGTTCTG
TTTGCTTCTTCAGAACCAAGTCCTTCATTTTACTGACTTTCAGTTGTTCAAGCCTCAATA
CCTCAGCTTCTACCTGCATCAAAGAATATCATCTCTCCTAACCTAACCAATAAATACAAT
TAAAGCAACTTCTGCAAACAACACATTGACTCACAAAGTTCATGACGTCAATGGTAAGGG
CATCGGCCTCTGTTATTTCAGGTTCTGATGCAGCAATATTGCATGTTATATTCTGGAACG
ACTGTTGCTCTTCTATCGGTGTATCCATAAGATTCCATAGTTCGAGCATTGTAGACGAGA
GATCTTGAAGCTGTAAGAGCTAACAGAGTTGAGGGCCGAAAGCAGTCATATGATGAAACT
TCTAGAATAGAACTGTAAGATGCTAACCTTCTGCATCCTTTCAATTTTTGTTTCCCGTAG
TCTCTGTATTGCCAACGCCAACCTCTCAATTGTGGTGTTGCTAATGTTCATTGGTACGCC
ATCCTCATCAAGACTGGGGTGTACATCAGATATTGTTTGCTTGAAGTTAACACCAAGTAC
TTTACACAAGGAATGCAAAGTATTCAGGTAATCCATTACTTGCTTTAGCCGCTCGCTCTG
CCAGATATTTAAAAAATCACAGAACTAGCATAAGTGAGAAATAGAAAATGTAATCAGTGT
GTACAAAGGGCAAAAGGGATGAACATGAACCTTCTCTTTCTCTAGGGACCGCAGCTCCGT
TCTTAACTCTTCTAGCCTTCTGCAGGATAGATCAGATTGATCCACAGGTGCTTTAAAAGG
GACAAAATCTGCAGGTCTGATCTCAGATGATATCTTTTTTATCTTGCCTATAACATCAAG
AATCTGGTTCCATCTTTCGGCCTTTCTATTCTTCATCTCTTCCAAATATGGGAAGATTGC
ACTCAGTTCCTCCCGTAAGCCATACCCTTTCTGTTCAGAATGAAGAAAAGACATGATGGG
AAATACTCATTATTGGCAAAGTCCGCATAGGAAGCTTCAAGCCTTTGAAATTAATTACAC
TAACAATACATGCGGAGTGAACATGCAACATCATTACTCTGAAGCTGTGTTTTACAGTTA
AATTGGTCAGTGAATAAACAATGCTGCCTCGTTATGATGAAATCAAAAGGGTATATATGA
CTGCAACCAAATTTACACGAGCCCTCATTTTCCTCTGCATGGATTGAATGGAATCGCTAC
TGTTCTGAACCCATCAGCCAATCGTTGACAATTAGGCATACTTGCAACCATCTATTGGAA
GAACACATTTATTTGTTTATTTGAAAACGGATTAAATTTTGAATATCCTGTTTTCTGAAG
AGATAAATGATAGTATGACAGAAGTAACAAAAACAGATGGCTGTCCTGGCATGAATTTCT
AACTAGCTGACCTGCCTGGGAACAGAATTAAGTCCCTAACACAACTAGGACTGACTGGAT
AACAGAACAATAGGGACCCGAAATTCATTTGTACAGTGTAACTGCACGCAATTAGCACAA
TAGTTGTGCCTTACCAAGTACCAACACAAGTTCTTTTGCGGTATTTTTTTTTTGGTGTGT
CCATGACACATCTAGATGTGACATAGTTATTGCACATCTAAATGATTAAATCAAGAGAAA
GGTGTGATAGCTCCTCAAGATCAATGATATAGGACTTAGATGTGCAATACATTATCTCAC
ACCTAAATGTGTTTCAACAAAACCGTTTTTTTTAGATAAACTTGCTTTGCGGTATTTGAG
GAGAAAACAAACAGGTGGAAGAGTGAACAACCTCCCTGACGAGGACGGGCGACTCGGCCA
TGGCGGAGCACACGGCGGCGAGCTCGGCCTGGGCGTCGGCGATGTCCCGCCGCAGCTCGG
CCCGGCAGCGGCTGGCCTGGTCGACCTTCCTCCGGTAGGCCTCGAGGCACTCCTGCTGGA
GCTCGAGCAGCATGGTGTCCCTCGCGGCGTCCTTCTCCCCGATCTCGTCCCAGATGACCT
GCGCACACACACACAGACACGCACGCACGCAACCAACCAACCGCGAGCGATCGTCAGACC
CGGCGATCGAATCACACCCGCCGCGGTACGTAATCGGAGAGGCCGCGCGCACCTGGAGCT
CGTGCATGAGGGCGCCGCACGCCGTCCCCATCTGGAGGAGCTGGTCGCCGGGGCGACGTC
CGCCGCTCATCCCGGTCCCGCCGGGGGCGCCGCGGCCTGCGGGTACGTGGGGAGCGAATC
GAGGGGGATTGGTTAATTACAGGGCCTCCGCCGCGCGCGGATTTCCGCCTCCCGCGATAC
GAGAGCTCGCTCACCGGTGCGCGGCCTGCCGGCGGACGGGGGCGGAGGCGTCGCCGGAGA
GGGCGCGCGGCGGGATTCGAAATGGGTTGGGAATGGGGAGGGAGACGATTGCGGAGGAGC
ACGGCCGGGGTTGGCGTTTGTTTGTGTTTCGGGATTTTCGGGGAGGAAGGAAGCGAGAAG
AAACTGTGGTGGTGGTGGTGGTGGTCCCCACTCGTTTCGAATTCGCGTCAGGATATCCCG
TCCGTCATGGGCCTTCCGTTTTCCGTTCCGTTTGGGAGGCTGCGTCTGGGTTGGGCTCGC
CTCCTTGTCGAAGCTCGTCTCATCAATCTTCTACGTCCGTCTTAAAACCTTCGGGGCCGT
ACGATAAAATAAGTATCTTGACTTCGTACTGGTACTTGTATAAAATGTACTAAGCTTAAG
ACATTTATTTTAAAACATAGAGAGTATTCATTTTTAATTATGGTAATAAAATGAAAACTA
CTCTCTGTATTCTTTCACGAAAGAAAAGGAAAAGAAAACACTCGCTCTGTACATATTTAA
AAACTGGACTCGAAAACCGGGTCAGCAATAAACCGAACCAAACTAGTTTTATGGTTTTCG
TGGTATCTGGTTTATGATACGACGTCGTTTTGAATTCTGGTAACTGATGTGAAAAAACAT
ATGTATTTATGTTTCTTGAAAGAAAACCATATGGACAGTCGATTACATGAGTATATGAGC
TTGTCTCGCTTTCATTTTCCAACATTCACACGCCCAAGAATGGTTTTATATGGACCTAAC
GTCGACCACATGACATCTCTATTGTTAAAAAGGGATTGTGTATGTCGTCGTCATTCATAC
GGAACTATCAATGCGAAAACAATTTGAAAATCAACGTCGGATTGGTTTGGAAATCAAGTC
ATTAATGAATTAACTAATAATATGATTAATTACATCTGTAATCAATTAGTACAATTAAAC
AATAATTTTATTGTGTGGAGTTACTTCTTGGGTCATTAATATAATTAATTAATTCCAGCA
CAATTTTTTTTAATAGGTACGCAATTAATTAGGCCTTGTGGATAATGAGAAACAAGGATC
CAACCGTATTATTCAGAATAGATTACGTGGTCCACTTTTTTTTACCTATTCCTTGCAAAA
CTGCTAATAATCTACCACTTCGCATGCCACCACTCCTAACATATTGTTTCAACCCTAGAT
ACATGCCACCACAATGTTGTTTCATCCCATAGCAAAGCTAGTAAAAGCAAAGCACTACAT
GTTGTTTCATCCCTAGATACATGCCACCACAATATTGTTTCATCCCATAGCAAAGCTAGT
AAAAGCAAAGCACTACATGTTGTTTCATCCCTAGATACATGCCACCACAATATTGTTTCA
TCCCATAGCAAAGCTAGTAAAAGAAAAGCACTACATGTTGTTTCATCCCTAGATACATGT
CATCACAATATTGTTTCATCCCATAGCAAAGCTAGTAAAAGCAAAGCACTACAAATTGTT
TCATCCCTAGATACATGACATCACAATATTGTTTCATCCCATAGCAAAGCTAGTAAAAGC
AAAGCACTACATATTCTTAAATCCCTAGATACATGGCATCACAATATTGTTTCATCCCAT
AGCAAAGCTAGTAAAAGCAAAGCACTACATATTGATTCATCCCTAGATACATGACATCAC
AATATCGTTTCATCCCATAGCAAAGCACTACATATTGTTTCATCCTTAGATACATGCCAT
CACAATATTGTTCATCCCATAGCAAACCTAGTAAAAGCAAAGCACTTCTGTACATGGCTT
AGTGTATCACTGTAACCTCATTTTGTAAAGTCTTCCTTATATCAATGAAAAGATGCATTT
TTTGCGTATTCATGAAAAATAACTAGTAAAAGATTAAAAGGCGTTGCTACCTGCTCACTC
AGTTCCACCGAAGAGTTAATGTGCAGACCGAAGGCCCAAAAAAACTTGTAACTTGATCTC
CCATATTTTTTTCAAGTTTTTTTGGCGAGGGTGCAAGAGTTAGATTCGCTAAGGAGTAAG
CACACCCATCTTCTCCACT