morexGenes - Barley RNA-seq Database

Contig contig_43244
Source Contig contig_43244
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43244 (7493 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_43244

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59073	2	1421 bp	MLOC_59073.1	Available	Available	LOC_Os02g42690.3, FRAME:-2, EVALUE:2e-14, 13102.m04736 protein zinc finger, C3HC4 type domain containing protein, expressed
CDS Structure of MLOC_59073

Contig Sequence (7493 bp)

>contig_43244 7493 assembly3_WGSMorex_rbca.fasta
GTACATTGGTGACTTGTCTTGGTACTCCTACTNNNNNNNNNNNNNNNNNNNCAAACTGAG
GGAAATACTTACTGATGATGTGCTGCATCACCCTTTCCTCTNNNNNNNNNNNNNNNACGC
AAGCTCAAGAGGTAGCACAGCGCCAGCCGGGAGTCAAATTCCCGAACAGGATGCGGCAGA
AAATATGTCAGTCGTTCCTTCAGCCATGGGGTACACTCATCAACCCTTCTCCTTTATGGT
GTCGGTTGCCTTTTTAAATGCACAGGAATCATGCGCGGCCCTCATCGCCGAAAGACGTGG
TCGGGGTATTGGTTAGCCAACCAAACCCAAGGACCTCAGTCAACATAGGAGCCCGGAACA
CAGGCCCAGTGCCTGAAATTTCCGACGGATTCTCAGCGACTAACTCGGAGATTGAGAGTG
TGATGAATCACATCGGTAGCGGAAGAAATCATTGCACCACCCTGTATTCTCCGAGCAAGA
GTTTAATGCTCTCAACTCGACTGATGCTTACCTTGGGGCTGCACGGGCCGATCTTAAGGA
AGTGGCCCACCACATGTCTGCCAAACTCCAAGTATGTTATCAGTATTTTGATAGCCGAAC
AAAAGTTCGGATCCAGTATCCCCCGAGCCTTAGTTTCGTCGTTAAGACCAAGTTAAGGGT
CAATATGATCCTTTATCGTTCTGCGGGATTTAAAGCAAGAAAATGAAAAATTGTCCAAAG
ACTTCCAGCTAAAGTCAAAGTGAGCTACAAGCCAGCAAGGCTGAGCTTGAAAACGTGGAT
AAATTCACCATAGAAGCGCATGGCAAGTGAAATTATTCATGATTTGCATAATTTGATTCG
GGTGTCCTGTATAACCAAGAAGTTGTGATATAGAAGGAGAATCTATAGGTCTATTGCAAA
AGGATTTAGATGCCTCTCGAGGGTCCCAGCGATACGTCGAGTCTCAGCTCGAAGCCGGGC
AGCGCGTATTGAAGCGATGCCCTGATGAAAACAACCAACTGAAAGAAGAGAAAACAAGGC
AAGCCAAAGGAATTGAGAGTTTGAAAGCTCAATTGGCGCAAAGCCACGAAGAGAATTGTA
ATTTAAAGAGCGGCATATACTGTAAGTAAAACTCTTGACCTTGTTTATGTGACGAATCAT
TGTTTGTTGCCTTGACCGCAAAGAATGTGTGCTTATTGTTGACCAGGTCCGATAAGTGGG
TGTCCCGTTGGTGAGGCCGGGTACCTTCAAGGGGGTCTGTTGAGGGAACTCTCTGTTGTA
CATGAACAAGCGTGGAAGGCCATCCGAAGCATGATTCTAGCTTTATGGCAAAATCAGACT
CTTCCACAAGGGATGGTCGAGCTTGCTGAGCTATTTAAAGGAGCTCGGAGCTATTGCGAG
CTATGGAAGACCTCGGCCTACCGAGAAGGAGCTCGGGAGGCATGGGGCATGATGAAGACC
CGCTTCGCTCGTCTGAATCCCGAAGACATGGCTAGAGATGGACTAGCAGGGCCTGACGGT
ACCGAGATTCCCCTCCACTTGGTTTATGATAATGTGATGCGAGCGGCTCGCCTATCGCAG
GAGGACTGTGCGTTGGATGCCATAATAGATGATTTGGACCAACCGCCGAGGGTGTAATCG
TTTGTCATGTTATAATTGTGTGTGAAAACACTTCCCTTCATTTTGAAAATATTTTTGTCA
TTAACCGGTCATCGGCTTCTACCTCCCTTATTAACTATTAAGGTGTGTTTCGTACTTTAT
ATCATATAATAATAGGGATCAACTTCCGATAATCAGGCAATCCGGCCATGTGGTGCTAAC
AGACAAAGATTATATGAGGGGATTGTCTTGTATTATGATATGTCGTAAGAAACATCTTTT
GGAAAAAATAGTTCCTTCGTAGGTTCCTTTTTCCGAGCTGTTACATAAATTGTCGTTGAT
GTAGCCATGTTTCCGTGGAATACGGATATGTGTTATGGGCGGCAAAAATTGCTGATTAGT
TGGACCTCGTTCGCAACCGATCAAGTTGTATCTTAAGAAACTCTAGCTTTTGGCATTACT
CGTCTGAGGTACGTATCCGGACGAACCGGACGTATCAATCGCACAGATGCTCCCTTTACC
CTTTAACCGAACATATTAAAAACGTAAAGGGTAAGAACATAAGCGAAGCAACCTAGCTTT
GCAAGGATCTTAAGTCCAAATAATGCATATAGTGGTGGGAACTTATATTGAGTCAAGGTT
TATATACGTAAATATATATATGTGATAAACATATCGGACTGCTTCGTTATGAAGCCCCTA
GCTGCTATTTTAAACATTCTATTTTACATGAGTATTGGGACATGTAGTCCCAGTAGTTCG
GTTAAGCTGAACACATCCTAGGAAAGTCCCCTAACATCCTACAAAAAGGAAACAATAAAT
GCTTGTCAAGAAGGAAAAAGGAATAAAACGAAGATGGTGACGACATTGGTCTAGCCGTAG
AAATGCTGAAGGTGGGCTGCATTCCACGGGTTCGGCTCGAGGTGATTGTCTCCTGGGTTG
CGCAGACGATAAGTTGCTCCTATTAAAACTTCATCAATTATGAAAAGGACCTCCCACTTT
GGGTGAAGTTTATGCTTCTGTTTCTCTAGAAGGCGTAGGACAAGCTCTCCCATGTTGTAT
GCTTTTGCTCGAACTTCTCTGCTTTGATAGCGCCGAGCTTGCTGCTGGTAAAAGGCGGAT
CGGGCCTGAGCCATGCCGCGCTCGCCTTCTAAGGCGTCCAAGTCGTCTTGCTGATCTAAC
TTGGCCTCCTTTTCCACTTTCATGCGCACACGAGGTGCGTCGTGGATAATATCACAGGGA
AGGACCGCTTCGGCCCCATATACCATGAAAAATGGTGTGTATCCTATAGAACGATTCGGG
ATGGTACGCAAGCCCCATAGTACGGAGTCGAGCTCCTCCACCAAATGGCAGTCAGACTCT
GTTAGAGAGCCAACTAGCCGTGATTTGATACAACTCATGATGAGCCCATTGGCTTGTTCG
ACCTGTCCATTGGTCTACGGGAGTCTGTACGAGTCATACTCCGGATTCGATAGTTAATCG
CTTTCCTAAAAAAAACCGTACAGATTGAGGGAGCTGCTTTGGACATGCTATAAAAAGATC
AGGATTGATCGAGACCTGACAAGACGACTCGGATTTGTAGTACACCGGCCTTATAGTGAC
CTTAGGCAACTGCTCAACGGTGACCGACGTTGTGGCGGTGCCGCCCATCGTGCTGCAGTT
CAATGTGGAAACAAATATTCACATCTCTGCAAGTTAAGTTGAGGTACAGTTATTCCCATC
ATCCCCAAACTGATGGATAGACTGAGCGATTAAACCATTGCTTGGATTCGTATCCCATCG
CCTCATTTGCTATCTTTATCAAAGACAAACTATCTGCCATTCCTTTCCTCATTTGCTATC
TCTATCAAACACAAACCCTAGATAAACTCCAGAGAACCATGTATAGTCGAGGTTCCTCCA
TCGTTAATGGATGATAAAGTCCCAAATTCATCAATTATACTCCTGATTGGATCATTTATA
GAGCAGATCCTCCTATAGGACGTGGTATCTAGAACCCTTCTTTCCTTGAGGGCGTTGAAA
ATTTTGGGAAAGCAACGAGGTTTTATCAAATCCCTCCCCGCCATTCCATATCTGAGTGGC
GGTGGTGAGTTTATGTATGACATTCTTCACATGTATATGGAGTATGGTTGGACAAAGGGT
TGTTTAGAGCATTTCTAGCGGATCCTTTAAAATCTCCTACCATAAAATCAGTTTACACAA
TACTGCAAACAAAAATCACGTTTTTACGGTATGATTTTTCTTTCGCTAGAATATATCCAT
ATAAATCCAAATAAGACATCACACCCTAACCACAAAATATAAATTACAATTGGCCAGCCC
GCGTACACGAGCAGCTCGAGCGAACTGGCACACAGCGGCAGCGGCTCCCTTCATCACGGT
CGGCAGCTACCCTCCTCCCGTCCTCGCCGGTTGGCGGCTCCGCTCCTCCCCCACCCTCAT
GCCACCATGCTCCTTGTTGGACGTAGTGACCGGCTGCACACGACGCGACGGAGGGTGTTG
AGCTCTGCCCGCGCCTTGTCAGACGCCATGACGGGCTGCACACACGACAACGGAAGTCAT
CGAGCTCCGCTCCCGCCTCGTTGGATGCCCTGACAGACTGCAAGCACGACGGCGAAGGGC
ATCGAGCCACCCGCGCCTCGTCGGACGGGTTGCACGCATGGCGGCGAAGGGCGTTGAGCT
CCACCCACGTCTCTTCGGACGCCGTGACAGGCTACACACACAGCGGCGGAGGGTGTCAGT
CTCTGTCCATGCCTCATAGGACGACGTGATGGGCTGCACGAGGGGGCAAACCGGCGGCGG
GGACGGCCACGCGAGAGCGACCCGACAACAGGGATGGTCGGAATCGAGCTCTCATTGTGG
CGGTTGGGCGTGAATGGAAGGCGCGGGAGGTGAAACTTCCCTCCCGCCAACCGAAGAGCT
CAACTTCCCTAGATATGGAGGAAATGACCCACATATCCAGGATGTCGTAAAAAATACGGG
AAAATTGAATATACGGGATATATTCACCGACAAAATGGCATCCGTTCCCGGGGATGAGTT
TGGTTGCGGAACGAAGTGGAATGGAATGTCATGGTTCCATGACATTTCATTTCACTAGAC
TGGATTGATTCTGTTCTTATGTTTGTTTGAGACAATAGATGGAATTGAGAGGTTACATTT
GAGCGTTTGGTTGATGTGACAAAATAAAACGAATTTGGTTCATTTTGATAATATGTATAC
ACAAGCATGATCGTTAACGCCCCCGTAGATTGGGCCGCCGCGCATCAGCAGATCAAGCGC
CGACGCCGCCCTAGAGCAGATTAGGCCGTCGGTGACGCCCTCACGCAGATGAGTACGCCG
TGCACCGGCAGTTCAGGCCGCCACCGCCGCGCAGGTCAGGCCATCATCCTTTAGTCACCC
GGCCGTCGCACCTGCTCCTCTTCAGATCAAGAGAGGGAGAGACGAGAAGAAGGCGACACA
AGATGGCGAGGGGTTGGAGCGAGATCTAGACTGGTTTCGCATAATTCCTACAATTTGGAG
GTATCGATGCGTTCTGCATATGGGAGAATATTCCTTCGGTAAGAACAAGTTGGTTCCTAT
TCCACTTAAGTACTACACACCGAAACAAGGCCTCGAAACAGCTATGTACTAAACAGGGGA
ACAAGGCCTCGAAACGGGTCCAACCCATTATCATTTCAGTTGGTGACTGAAACTAAACAC
ACCATAAATGAATCAAATTACGACGTTTTCTGAAGGAAAAAGGTCTATTTTAAACCCTTA
ATTCATAAAGGTTCAGTGAATCAAACCCTCAAGTCCAAATCCCTGCCGTTTCCACCCTGA
ACTATACAATTTCGATCTAAATTAAACCCTGAGACATAAAAACGTTCACGTGGCAAATAT
CAACGGGAATTCGGCTGACTGATGGGCCAGGAAGGAAACACGTTGGGTCGGCCCATTTGT
TTTTTTTTTTTCTGTTGGTCTTCTTAAAAATGCGTGCAAGATGATTCAAATCAGTGAAAT
TTTCATTTGAAAATCCGTGAACTTTTTTTCAAATGGAAGCGAGACCAGCGTACTAGCTTG
CCAATGGGACCTGGTCTGGCCTCTGCGAGACGTGCCAGTCAGCAGGTCAGTTCACCGGTG
GGCTAGGGTCGAAGAAAAAAGGCGGTGGGCGGCACGGCATGGGCGGGATCCGGAGCGGGT
GCCCGAGCTGCACCATATCTGAAGATAAATTCAGAGTTTTTTGCGTAGAGCGCGGGGAGG
CGGGGAGCATGGTGATGGCAAGGCGAGGAACTCCTGCGAACCTCCAGCTTTCTGTTATTG
CTTTAGAACAGAAACAGAGAAATCTCGTCATCCTTTGCAATCCCGGTTTAGCACACGAAT
CCAGGGTTCAATTTAGATCGAGATTGCATACATTAGAATGCAAACGACAGGGATTTAGAT
TTGAAGGTTTAATTCGCGGAACCTGTACGAATTCAGGGTTTAAAACGAATGTTTTCCCTC
AAACAAGGAGGAAGGAGAGGAACGCCAGCATGGCGAGGAACACCCATATCTGCCGCAACC
TGCGGGCCACCCGCCTCTGCTGGCGCGCCATCCGCCAGCCCTCGCCGTCGCGGTACAAAG
ACGGCGGTGGCGGCCTCCCGCCGCCCCTCGCCGCCCATGGGATTAGCACCGCCAGCGCGA
TGCCGCCGAGCAAGCGCTCCGCGTTGTAGCAGTCCAGGCCATTGCTGATGCCAACGTTGT
CGTAGTAGTAGTAGAAGCTGCCGCCGTCGTCCGAGTCCCGCCCCTCAAGGCGCTCCGCGT
TCGGCTCCGTCGCCGGCGGACGACGCTGTACCTGCCAGACTCTGCCTTCGGCCGGGCTTA
CGGTGGCGGCGCGAGCGCGGCCGTAGAGCGGCACGAGGTGGTCCTCGGAGACGGCGGCCT
TGCAGACGGGGCAGCAAGCGGAGGAGGACGAGGCGCGGGACTTGGAGGAGGAGGTGGTGA
GCCAGCGGAAGATGCAGGGCCAGCAGTAGAGGTGCCCGCACAGCGTCACCACCGGCTCCG
ACGCCGTCTCCAGGCAGATGCTGCAGTCCCAGCACGGCGCCGTCGTCGCGCCGTCGGGGG
CTCCGACGACGCCATCGTTGAAGACGCAACGCTGCAGCTTGTCGGCCTGCTGCCGCCATT
TCTCCTTGACCTTGGTCAGCTCCGTCATTAGAAGATCACAACCTGATCGAGTATCACAAA
CAGATCGACCGACCTCGTCAGAGAAGGATGAAGGAAAGCAGTTGAGGATCGACTTCAGTT
CTTGTTCCTGCGCTATGAATTCAGACCTCCGTCCTTATGTAGTATGCCTATGCATGTGTG
CTGGGGTCTGCTTTTTGTATCTAGTGCGAATTCATGTGTATCGATCTTTTCTTGCTTCTA
GTGTCACTGTCATTCTCATGGCAGCATGTGTCCACCCAACGCCTAGTTGTTGGATAATTG
GATATGCACGATGATGAGGGTTGCAGCGGCGGCAGCAGCTAGGGTCCAAGTTATGGATAT
GATGGATGATGTGGCGGCTAGAGTTTTCCTTGAAAACAACCTATCGCATAGTATATCTTC
CCTCTCATCCATCCATGCAGTGCAGAATGGACGGACGATGCTCGTATACACGCATGACAC
CCGTGTTTGATTGTTTGTTTTGGAGTCAACTAGCGCATTGTAACGGGATAGTAAAATTAT
TTAAAACTCGTATGCGCAAAACACATTCGTATGATCGACAAGACACTCCATATTTTATTA
TTGATTTTGAACAAACAACTTTAAAATTAATTAGTAAACCATTCAATTAAAGCTCTCCTT
TCTCTTCGTGAGGCCGTAACTCCCACCTGTCACATTGCCCCGGTTGTGCCTATTGCATGT
GTTAGTCTCGATGAGTGAACAGTGCAACGAAATCACCTAAAAAGGTAGCCACA