Map Locations of contig_43242 (8157 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_43242

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59069 1 230 bp MLOC_59069.1 Available Available None





CDS Structure of MLOC_59069






Contig Sequence (8157 bp)

>contig_43242 8157 assembly3_WGSMorex_rbca.fasta
TGCTTCATCACGGGGACATAGGTGTTATTCTGTTTTATGACATTTTATCTAGGAGAGAGG
ACTAGGTCCTATGAGAGATAAGTTCTTCTGGTTTATATTAACTTGGCATGATCGATTAGG
ATGATGATTATTATGATATTTTTCCGTTTTAGGAGATTTTAACTTAGTATGATTAAGATG
ATGGTGAGTTATTAAATGAGTAAGATGATGATGAGTTATATGTCATATATTTGATTAAAA
TGGACGAATGCAAGTGATCAAGTTGAATTAAAGGAAAATATGATGTTTTCTTCTAATTCA
ACATGATCACTTGTATTCATCCACTTTAACTAAATATAGTTGTTGGCTCAATAATTATTG
ATGTGTATATTAATATGTGTAACCGTGTGTAAATACAACATACATATAAAAAAAATGTGC
GTTACCAGTGGCGCGGGTTAGAAAAGCACGGTACTGATAACTCGGTTAGTAGTAGCGCTG
TCTAAGATACGGTACTGCTAAACGTTAGATGTAGCGCTGGGCAAACGACCCTACTGTGAA
ATGTTAGCTATAGCGTCGTAGCAGTAATGGGGGCACCCGCACTACTGATAGTTCAAAAAC
CCACGCTACTGCTAGGGTTTTCTCTAGTAGTGCGGCAGCGACGAACGGAGGAAGGAGACA
TGAACTTATTTATAACAGATTTGAAGGTAGAAGTTTTGTTTTGCAAAATCGTCAGAACAC
TACGCCACCGACAAGCTTTACCGGACGGAGAGCGGTATCTTACAATCTTGCAAGGGCAAA
TGCATTCCCATCAGGAATTCTGGCAGGAGTACTATTTATTCCAAATCTATGCAAACTGAA
ATCGTAGCTCGTGGGCGTCTACTTTATGACTCTAGTTCAAATACCCATGCTAAATATTGA
AATCATCAAATAACTAGATTTAATACAGTCCTCTAATCACGTGTCAAATCAGAATTGTTC
TTCCATGTTAAACGCTCATTTGTGCTCTCCTCATGCTCCACGCCCTGAGCCGAGGCACTC
TGACAGTGGCACTGCCATTGTTAAATGCATACATGAGGGGCTGGTGGTCGTTGTCGACCA
GTGACACCGGGTAAACTCTAGCCATGATGCAGACCCTGCCACCACCGCCGAAGCTCTCCA
CCGCAGACCGATCAATCTGCACGGCGGTGTACATTTTCAGTTATATCAGGGAGTGAACAT
ATAAGATGTAACACGAGAAATGACACGAATGCCACAAAACTCACCAGAGTTCGGAGAGAG
ATCTTCCTTTCCTTTTCAAGGTCAAATTCAAAGAAGCCACCGTAGGCTGGTGTGTCCAGT
CCTGGTGTCAGGGAAGACCTGCGCAAAGAAAAGAAAAACTTTCTTTTTAGTTTCCTTCCA
GACATCAATAAATACAGAAATTTGTAGAAAGACTAACAAAGATTAAGGCAAAAAGCACTA
ACCTTCTTAGATCAGAGCACATGAGGATCATGTAATTTTTCTGTGACTTGTAAACTCTGA
AGTGCACGACAGTGTGCTCCTCCATGTTGTCGGAGGCCAGCATAACAAGTCCAAATGGCC
CTATGCCACCATGAACCGATGCATCCGCTTCCCGGCAATGCTTCTGGGTGTCAAAAAGCC
AGGAAGGATCAAAAGGGTCGGCATCATGAATTGACGCCAGCTCGAAATCTATCTCGACGT
CAGCCTGTTTCAAGAAAATTATGTACCTGATTAGCTACAACTGCTCTCAAAAACAGACAA
AATACCTCCATAAGTATAATTAACAAATATCGGAACACCCTGCAACTTTTACTGGCATGC
CTCTTTCTGTAGTAATAATATTCTTGGGGAGACCAGGTAAGAACGTTTTGGAAAAGGAAA
CTACCTGCAAAGTGTCAATTCCCTTAATGTCAAATAGATCCCCCTTCTTCAGCTCTAGTT
CATGATGGTTGATTTCATTTCTTCGAAGGGATTTAATCTCTTCAACAGGCCATTGCAGCA
ACCTTTTGCCATCATTGTCTAACCAAATTGTCCTAGGGAATGACTAAATGTATAACAGAA
AAACTGAGGTTAAAGATGTTTCACTGATTTGTTAAATCATTATTTCAGTATGGTGCAATT
ACAGTCAATTAAGAGCAGATTTCTTACATGGATTCCTGCCCAGCCTTTTGCAACATCATC
TGGAGAACTATCCATCTCGGTAGTCCAAGCCCATATTATCCGCCTTCCATGTTTCGAGTC
AAAGAACGTTTTTGAAGCATAGAAATTGCCGTAATCGATCCTTGGCCATAGTCGACTATC
ATCTAGGACAATATCTGGCACAAAGGCATCACGTTTGAGATCATAAACCCCAATCATGTA
CACATCTTGAAAGAAATTGCCCATTTTGAGAACATGCTTGGCGCCATATGGGATTGTTGA
AGACATATCCAGTCCGTTGTCACTTCCGGGTAGTACCGCAAAGAAATCCAGGCACTCAAA
CATACGGGTGCCATTGGATGAATACAATGGGTGGTCAACTCTAGTCCAGTTCAAGAAGTC
TTCACTCTTGTACAAAAGTGCGGCACCGTAGCCATTCAGCTCAGCACCAACAGCTATTCT
CCATAGTCCATCCGGCCCGATCCAACCGGTTGTCGGATCCCTGAACTGCCCCGAGTTCAA
GCCTGGTACACCCGATTGGATCACCGGGTTATTGCCTGCTTTGGTCCATTCCCTCAGGTA
CGGATCAGACCGGTTTTTGGGAAGCGCAATATTTTGGACCTGATGCTTCTCTATGTCGAT
GACACCAGTGTATATAATGACCGGTTGATCACCAGATACAATTGTGGCTGAGCCGGACCA
GCAACCTTTTATGTCATTTGGGGTATCCGGCTCTATTGCGGGTTCAAGAGTGATCCAGTT
GACAAGGTCTGTTGAGACCGAATGGCCCCAAACTATGTTGAGCGAGGTATTCGGATTGAA
GGAGCCATCAGGGTTATATTGGTAGAATTCATGGTAGATACCATTGTAGTACATTGGTCC
TGAAATTTTTATAAATACAGTATAAGATAGAATGCTCCAATTTCCTCTCTTTTCTACTTA
AAAGTGTTTGTGCCTGAGATATTCATACCACATGGATCTTTTTTGTTGTCGTAGATTTCC
AAGGGAAGCCAGTCCATCAAATATACGAGGAAAAGTTGAGAGAATGTCAATGACTTGCAA
GAAATGTACAATTAATAGGGTATGACTATTGGTAGAAACAAGACCAAAGATACTCTTGAT
TTAAAATATGCTAGTACTTACTTCATTACTATTATATGAGCATACTAGATCTCTCTTATA
TAATTCAGACACATGATTTAAGACCCTTGTTTCAGCGTTATAATTATACTTAGTTTTCCT
CAATCGTCTTGTTTTCTCTCTGCCTCTGGTTGGATCAACTCCACCTCTTTTCCCCATTGT
CATACGCCCATTCAATATGTCGCAATACCCCCCCCCCCCCATTTAAATGATTTATATCTC
GAAACAAGCTTCCGCCCCACTTTATAAATAAAGCAACATCCAAACAAAATACACGGTCGA
ACGATACAAGATGGAGGGGCAGCCCTCGTACAACACTGATCCCAGAATACCAAATCACGC
ATGAAATACACAACCGAAAAAGAAAATAGGAGATCTGAGTACATCGACACGCTGCGCACT
AAAACACCTAGGTTTCACAGAACGCCCTCAAGAGATAAAACGACGCTAAGCGTCCCCGTA
GTCGAGTCCGTAAAGGACATAGGTTTTCACCCGCACCCGGAACCCTGGCACAACGAGGAG
CACCACGACAACGTCTTTAAGATGATAGCGGCGCCCACAAGCGTCATCGCCGTCGGCGAC
AAAGTGCAGATCTTTCACTCGGTAGCTCCCATGTACCACCTCGAGGTCTTCAAGACAAGT
GAGATGACAACGGATCCCCAGGCCCGGGTCGGGGCGCCGCAACTACCGAAGACAGAGAAC
ACGCCCGAGCAACCCACCGCCCACACGACCAAGAAGAGTAGCCACCACCACCAACATGGT
GCCCGCCGGAGAGCCAACCATGTGCCCCGGCGTCCAAGCCCGAGAAACCACCAAGCGTCC
CCATCGAAGCGACTCAACCACGACAGAAAGAGTAAAAGGGACCTCCTTTCACGCCTAACC
CAACATCAGTCACGGTACCTGGGTTGACACCTCCACCGTAGGAGGCGTCGGTCCCTGCGT
CCCCAGCCAAACTGTATCCAGATAAGTTTGGAAAACCAGGAAAATTGTTGATGCCTCTTC
CAATTACATGAAACCGAAATCTGCAAAAATCTCTCTGCCCATATTTCAAATATTTTGTGT
GAGTTCCTATTAAAATTTTGCCAAATTGTACGATTTGGGTTTTGCGGAAGCATCTAAAGA
ACATGGCTACCATCGTACTATGGTATTATTACTCAAAATCTAAATGCAGCAGCACCTACA
CCGAGCACATCAAATCAGAGAGACCGCACGATTGCGACAAACAAAAGTGAACAGATGACC
TAGAAAATTGAACAGAGAGGAAGCTTAAAAAGGAACCAAAAGGCATAAACATACCGTTGA
TCCAGTTTTTGGGAGGCTGGAGGTGGTAGGCAGTCCTGTACCTCTGGCTGACAATGGAGG
GGACCTTTGTTGAAGACTGTGAGCAGAAGAAAAAGGGTCCTCCATTGCTGCAGGGCCATG
CCTAAGAAATTTGGGAACCAGCACCAAAGCTCAAGTATTAGGGAGGCCCTAGCTTGGTGC
TGGGCGAGATTACAAGATTATTATTAACAAGATATACTTGCTTACATTATTGATAAAATG
ATACAGGAACAACTAACCGTTCAAAAACTAGCCGCTTGAATTACAACAGTTTGAAACAGT
TGTTACAAGACAATGTAAAAATAAAATATGTTACCGAAACAGAGAGTGGGTGAACATGGC
AAACAGAGACGAGCGAAACAGAGTGTATGTAACGGAAACAAATGATAGGCATTGCACGTC
TTATAGGTATAAGATTAAGTTTCAAATCATAAAGAAATAGGAGCTTTAGTGTACGGTAGG
AGGAAAGTGAGCGAATATCGTCTTAGGCATAATTACCACGAGTTGGAAGAGAAGGCTGGT
GGAGAAGATGCACGCAAGGCCACCAAGCCAGCTGCAGCAGAAGAAGAAGTAACTAATTAA
TCAGAAGAAACAAGTCGAACAGCTAATGAACTCGACCAACAACAATGGAACAGCAGTAGA
TGAACTCACACTGTCAAGGTAGACATCGATCAAGAGCAAGTTGACAGCAGCAGCAGCAGC
AGCCAGGCAGCGGAAGACACTCCATTATATATGTCAGTGAAACATTATACACTTGCAATC
TGCGGAAGAAGAAAGTCAGGAGGGGAGAAGCCCTCACCTTGCACGGTCATCGCCATCGCC
TCCGGCGGGCGAGCGGGCGGCGGAGCGCGCAAATCTTAGCTCCCCGGCGAACGGCGGAGG
GAGCGCGGTCACCTTGGCTTGAACTGAGGTCGGGTAGGTGGGTGGGACGCATGTTTGCTT
GTGCGCTCACTTGCTCAATTAGTAATTTTGTGTGGCCGACATGGATGGGTCCGTGCTACC
ATGTCTTTTTCACCTCACCTTTTTTTTTTTTGGAGACAAATGCCATTTTCACCTGTTCTC
TGGGGTCCAAACGTACGTAGATCGGATCCATCCACAAATATGCATGTGAATGACTGAATG
TGAATGTGCTGGGCCGTTCGAAATGAGCCGTGGAAAATGACTCGCCCACATCCATCCATC
ACGTAGATCCATCCATCATTGTACTATGTGCTGTATCTGTCTCCTCCTCCTGTCCTCTTG
GCTTTCTCAAGCTGTTTTGTCTCAGAGCGAGTTGTTGTGTTATGTGGTGGCATCTGTCCC
GGTCAGCCAACATTTGTCCACTTCTCCTCCGGCTTCTCCTTCCACTGGTCCGAAAATAAT
GTCTCATGTGATTTGTGTGTGTTTCTTTTTTTGGTATCTGTAATCTCTTTACATGTGGTC
TTATCCTGGTTTTAGGGGAACCGGTTTTTGTCCGATTTTAGTATTTTTTTTCCTTCCAGC
TCTTCTTTCTGGTTTTGTTTCTGCTTTCAATTTGTCTCCCATGTCTTTTTTATCTTCTTT
TCATTAATACATGGGTATTTATTTAAATATATGACCCCATTCTAAAATTGCATAAATATT
TTTTGCATCACCTTTGTGTTATTTACCAAATATTTAAGTTGCCACTTTAAAAAATTGAAC
AAGTATTAAAACAAATAAAAAATTAAAAAAATATTCAACTTGTTTTTTAAAATATATGTT
CACAATTGAAAAATAATATTGTCATACAGTATAAAAATATTCCCATGTGATACTTGTTTT
TCCTAATTTGTAAATAATATAAACAACAAAATATTTCACACATTTTGAAGATCCTAAATT
TTGAGAACATTTATCTAAATTTAATAAACATTATTTTACTTTTTAGCATTCTTTAAAATT
TTCTATGCGAAACCCAATTCATTTTTCTCCTACGTACCCGTTAAGAGTGCACGAATCTTG
ATGGATCTAACGTTAGCTGGCTAGGGGGTAACTACCACTTGGTGGTAGAATCTATTTTAT
CTACAGGCAGTGCTACTTACCACTACATTGCCTAGCTATCACATGTCCTCCCGTACGCCA
ATGCTAAACGGGTTAGTGGATGGGAAGATCCGTTAACAGAATATACTAACAAAAAAAGAA
CAGAATATACTCCATATATGTCTTGGAGTGGACAGAGGCGTTTTGGGTATATACTATTTT
GCTGCGTATGGAGTATGTACTTTAACTAAGATTTGGGGTATAAAGACAAAAGAGTATGTC
AATGATATAGAAAGAGAGTATGATCAAGGATGGTCTATGTGGTATGTGTGTATGATGTAG
CACTTTGGGAGTGTATTCATGAGAGGAGTGGAAATGCAATTCGGTTCCCGGGGCCAAAAA
AAAGTTTGAAATGAAAAAAAATAAGACAAAAATTATTTGTGTTCTTTGTCACATTCAAAT
GTTACCTGTAAATTTTGAGGCAAAAAGGTAAAACATTTTAGCTTGTGCAAGAAAACAAAT
TAAACACCAAAAGTTACCCCAAAATGTCATTCTAAATTTGTTTTTTTTTTTTTTTGCTGA
CGAAACACCGTTGCCACTTATCGTACGGAAATTGTCATGGATGTTATCGACACTAATACA
ATCATCTACAAAAAATTCAGAATTTTTTAAAAATATTTAATACTTTTGTTTATGTTACTG
TTCACTCAAAAGCATACATCACTCCCAGAGAGGAGTATATTCGTCTGACGAAGGAGTATA
TTGAAGATAGCATGGAGTATACTAAACAATGGCAGTATGTAGTACGTAGAATAACAAAGA
AAGTAGTATGAAGTATGTAGTATAACAAAGAAGGTAGTATGAAGAAATAGTATATTTCAC
AGTATATCACATCTATTTGTTCAACAGTACAACTGGTTCATCCATGCATGGAATTCTCAA
CCTTAAATTGAACAAGCACTCGTATACACTATTATCTTTCACCATCTTTGCATGTGGCTA
TGTTCTCACACCTCGGCTCCCTATGAAAATTGTTGTGACAACATATCTTTTGCAACCGTT
CATCGCCGCCGTTGCCGTCGCCACCGAACAGGCAGGATTGCCGCCCTCCGTTGTGTGTTG
TTGTACGTCATCGTCATCGTGCCAGGACTGTCAACCAGTTACCTAGCAGCCATGAGTAAA
CGTACATCGTTGTTTTTCCGTCGTGGTGATGGAGCAATCTAGCTCCTTGTAAATTATTGT
CGTAGTCCACATGATCCACTGAACCTGAACCATCCATAACATATCGTTAATAACTAGGGG
GCGACTAATTGGTCACTAGAGATGGCGGCGTTAGGCATCGGAAAACAGATCGTTCATTAC
GGAAGTTCCGAGTCTTTATGCAATCTCCAGGAAGAAAAAATAGATTTTAATCTCAAAAGT
AACAACTGCATGTGGTGCAACTACAGCCAGAGATTAGATCAGCTAGACATACACGTGCAT
CTTCTAACGTACTGCACCGGTGGAGTATTGTTCTCCATACTAGCACAAATGCCCGTGCGT
TNCAACGGGAGAAAAATAAAAAAAGGCACGTACGTAAGGTCTTAGATTATAAAATAT