Map Locations of contig_43235 (5970 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43235

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_59062 2 913 bp AK368196 Available Available None





CDS Structure of MLOC_59062






Contig Sequence (5970 bp)

>contig_43235 5970 assembly3_WGSMorex_rbca.fasta
AAAGGTCAAAAACAAGAAAAAAAACAAAAACTGGCACTGGGCTCTAGGTCANNNNNNNNN
NNNNNNAAATAATATAAAATAACATATTCATGCATATAAGACATCCAAAGTTGATAATAT
AATAGCATAGAACGATTAAAAATTATAAATACGTTGAAGACATATCATTCTAGATCCCGC
CGACATCAAAGATACACTTGTGATTTGTGAATGCAATAAACATGATGTTGCGGCCCATCA
ATGATCGCCTCAGAAGCAGCACCGGAGACAAAGGACTAGTGGAAGCAATGGAGCAGCGAT
TCTGCATATCATGGTGACACGACGTTCTTTAGCATCATTTTTTTTCCTTGTAAAAGCAAT
CAATGCACCGAGTAAAAAACAACTTTAAGAAAAGAAAGTATTAAATTGTGGATTTGACAA
GGCTGCAAACTTCCGAGGAAGCAATGCGGCGATTCTGATTGATGAATGATAAAATGGCAA
ACTGAAAAGGAAAAAAGTGATGAACATATGCATTAAACTGTTGCTGGCAAAATATATGTT
TTCTACTATGTTGCTTAGCACAATAACTAAAGAAATGATTTTAAAAAACATAGGATCGTG
GTGTAAGAATGAATAAGGTGCCTTGTTCTTTCCTTAGAAGAGACAAATAAATCTTGATGA
ACACTAAACATTGTAAGTTGATCATCTACAACACACAAGAAACATTGGATGAGAAAAAAA
AAAGAAACATTGGATGAGAAAAAAAAAGAAACATTGTATCAGAGTTTTTACAAAAGAAAA
AAAACTAAACACCGAAGAATGAAGAACAAATCTACTCTTACTTTCCTGAACATATATAAT
AATAATGTTAATCATGTATATTTTAAATATTAGTTGTGTATTTTTAAAATAGTGAACATG
TATAGAAAAATGTACATGGTATATGAAAAAAGTGTAGACATCCGAAAATATATACTAATA
TTAGACATAAAAATATATGTCCACAAAGTAGTTAATCTTGTATGGTGAAAATGTTAAACG
TGTATATAAAAAATGTTTTTGAGGTATATAAAAATGTTGAAAGTCTACTGAAAAAGCATA
TGTTGAACAAAAACGAAACTGATTGAAATAAAAAGAAATACTGAAAACAAAGAAAGCCAG
CAAAAACAAAAAAAGAAGAACAATGAGAAAATAAGTTCAAAAACAAATGAAAATAAATGA
ACCTGTGAAGGACAAAAAGGAAAATCAAGAAAAAAAATAAGAAAAAATGAAGAAAAAACC
CAGTGAAAACCAGGAAAGAACCAAACGAAAAGAAAGAAAAAATGAAAAAGAAAGCAAAAA
TCTGCAAAAATCATAAAATAAACGATGAAAACGGGTTAAACAAAGAAAAATAGAACTCCG
AAGAAATAATATTGAAGAGAAAAAAAAGGACGAACCATTAAGTCCCTCTAGCGAGTGATA
TGAAGCTAACGAAGCGAGCCAATGACTTATGGTTTTTTCTCCATCGGTTTTGGGTTCTAG
AACAGGGGTTTTCGTTTTTCCTTTGTTTTCCGTTGATTTTTTCTTTTCTTTTACGTTTTA
TGTTTTACGTTATTTATTTATTTTTATTCATTTTTCTAAAATATTTCAATTTTGCGAACG
TTTTTCAATTTGTGAACATCTCTTTAAATCATGACCATTTAATTTGGTTCGAATTCATGA
ACTCTTTTAAGAAATTCACAAAAGTTTTGTGGAAATAGAAAACAGTTGTTCTGAAATTTG
CGGACATTGTTTTAAATCAGGAACATATTTCGATATTTGGTAAAATAAGATAAAATTCAT
GAGCATTTTTAGAAATACATCAACACATTTTTTGAACAGAGGATACTTTTTAAAATTTGG
GAACCATGTTTTAAAATCACCAATATTTTTCTATTGTTGTGTATCTTTAAAATTCATGAA
ATTTAAATGAATTTACAATTTTGTGTTCAAAATCATGAAGATTTTTTGAATATGTGAACT
TTTGGCGTAATCATGAATATTTATTGAACATGACAACATTTAAAAATAATTAAGTCCATT
GTTTTCATCCGCGAATTTTTTTTTAAATAGTGAAAAAATATTTTTAGTTGACAAACATTT
TATTATTTGTCCAATATTTGTTTTGAAAATTCACAAATATTTAAAAATTTGAAGTTTTTG
GGATGCTGCATTATTATAAATAAGAGAAAATGAGTAGAAAATAGAAAATACAGGTGCGTG
ATTATTTTTTGGGCTGTCCGAGAAAAAGAAAATAGGGTGCATCCCGCTTCGTGCATGGTC
CTGCCCAAAAGGGAGGGTGCGGTTTCCCCTTTCTTCGGCGCGGTTTACGCCAAATAGGAT
ATATCCACGACATGCACTTCCCCTCTCTTCTTGCTTTATAAATTGTTTGTGCTTTCAAAT
TTGTTTGGTTTTTTTATCAGAATTATTCTTCATTTTCAATTTTTGTTCTCAAGATTCAAA
AAAAGGTTCGTGCTTCAAAAAAAAGAGAGTGGTTAATTTGACGCAAAGCGCATCCAATAG
GATGTCGACTTTACTGCAGGGAGTCGGGCAAACATGAGAGTGGAGGCAAGGGATTTTGAT
GGACTGGCTCTTTACTGATCCCGGTTTTCGAAATCTTATAGAGGTTTCAGCCGTTTGTTT
TTTCGGTATTGGAAAACTTATAGAATGTTTCTGAATCGTTTTTATCTTTATTATTTTCTG
TTTTAAAAAATATTCTGATTTTTTAAAAAATGTTCTTCATTTTCATTTTTTTTCTTCAAA
TACAAAAAATGTTTTTCTTTTTATAAAAGTTCTAAATTTCAAATAATTGCTGTTTTCAAA
AACATTTATAACTTCATAAAATATTTGGGATTTTCAAAAAAGTTTGGTTTTTATAAATAA
ATTTTGGCATTTTCAGAAAATGTTCGGTATTTTCAAAAAATATGTTATGTATAAAAGAAA
TTAAAATTTCAAATTAAGTTCATGTTTGAAAATTGTTCTTAAATTTCGAAAAATGTTCTT
GATTTTTAGAAAATGCTAGAAATTTCAAAACATTGTCGATTTTAACAATGTTTAATATTT
AAGAAAAATGTTCTGAATTTTTTAAAAATATTCTTTTTGTCAAAACAAATCCTGTCTTTG
AGAAAATGTTCATGTCTTTAAAAATTATTCACGTTCATGTATTTGTTTAGCATTTTTTAA
AATTGTTCTCATTTTCAAAATTTATTCTCAAGATTCAAAAATGTCCGTTTTTAAAAAAAT
TGTTCATGCTTCCAAATTTGTTTGGGTTTTAAAAGTTTTTTTCCGTTTCAAAAAAAAATT
CTTAAGATTAAAAAAAACATTTTTGCTTTAAAAAATTGTTAGCGCTTCCAAATTTGTTCT
TGGTTTCAAAATTTGTTCACAAGATTCAAAAAATGTTCGTCCTTTGAAAAATTGTTTGGT
CTTTCAAATTTGTTCTCGGTCTTAAAAAATGTTCATGTTTTCAAAAAATGGTTTGGAAAT
TCAACATTTGTTTGTTTTCATAAATAAATATAAAAATATAAAAAGAAATAAAAAATGAAC
CAAAAAAGAAAGGACGTCGGTGTAAAAGGAAAAAAACAGAAAAAGGAAAAAACTGACCTG
GCCTAGTCAGGCTACCACCCTGTGCGCCCGAGCGACTCCCTGTCGCAGAATGCGGCAGGT
AGGAGCTACCTGTCACCATTACCTGGAGGCTTTTACGTGTCGCGAAGCTTTATCTTTCGC
AGATAATTTGACTATGCATAACATATGTGTAGATCCAGCACGGCAAGAAGTGGTGAATAA
AATCATCAAGGGGACAGGAGGTCCAAACGCAGCCATAGTTCGTGAAATCAAACGCATTTG
TAATAGCTTTCTTTGTAGCTTCTTTTTTTCCTTGAGAATAGGACTTTTAATTTAGAGGCT
AATAACTTTGCCAGGTTTGCTTGTAATTTAGGTATGGATAGGCATGTATGGTTAGACAAT
TCTTATGACCCAAAAATTGTATCTATGACACTGGTTTTGAATTAATAAAGCAGGCAAGGT
TTCTAAAAAAAAACGTCTGCCACCACCTCCAGCCCATGCCGTTCGCAACCGAGCGGGAGG
AAGAACCGTCATGCGTATTTCACCATTTGTACGTACTTCATCCGTTTTTAAATATAAGTC
TTTTAGAGTTTTCATTAGTGGATTACATACGAAATAAAATGAGTGAATCTATATTTTAAA
TTATGTCTATATACATCCGTATGTAGTTTTTCACTGCAAATTTTAAAAGACTTATATTTA
GAAACGTAGGGAGTATTTCACATGTTCAATCAGCTCACAAAGGTCCTTTATTAGTACGTA
ACTTGTGATTACACATACAAGCACAACGGCTCCGTTATTCTGCGGCGTAGGGAGCGACTA
GCGAGAGACGCATGCATGTTGTTCATCCGGGACAGCCCACATCGTTTCTTCAGTAGATAC
GTACGTACACATGAGCGTGGATATGCCGATGCATGTCCACGCGTACGTGCGCGAGCCATG
CATGCATCGATCCATGCACGGCGCGCGCTGCCCTGCTCAGTAGTAGGGCTGGATCTTCCA
GCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCGGACGCC
GCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCG
CACGCACCTGAAGCCGTTGCCCACGTCCCTGCTCTCCGTCCACAGCACCGACTCGTCCAG
GAAGTCCGGGTTGTACGGCACCAGACGCACCTGCAACGTTCAGCAGGTTCTGCTATGGTG
ATCCTGTTGATACCAATTTACAGGAAGACAAACCAGTTAGGGCAAGAGGAGCTAGGCTGG
TCTACTTACAGGGTGGGACTGGCCGAGGGAGTGCTTGATGGCCTGGCCAGTGGCCTTGTT
CACGATGGCGAAGGCGGGGTAGCCCTCCTCGTCCTTGATGCTGGTGCTCCACCTCATGTC
CTTGATCCAGTGCTGGTAGTCGTCCTTGGGGTTGGCCGGCGCGAGCACCACCTTGCCGTT
GCGCACGGACATGGCGTAGTTGGGGTTGGCGCGGCAGTAGATCTTCACCGTAGGCTGCGG
CGGCATCGGCCGACCGCCGCAGTTGCCGTCGACGTTCACCTGCGACATGCCGTACGGCAC
CGGGGGCGCGTACCCCGGCGTCGCCATCCCGTACGAGCCGTAGCTCTCGCGGTAGTAGTC
CATGGCTAGCTGATCGATCTGCGCAATGCACGGCGACGGGACGGAGGAATTTATAGGGGC
GTCGCGTGGCGATGATATTCGTGTTCCATTGGTGTGCTATACATACATACATGGCGTTAG
CCTCACGCTGCCTGTCAGGTGATAAGCGATGTCGACGTGCGTGGTGGTGGGATTCCATGG
GATAGATAGGTAGATGATGACATGGTACACTAGCTAGCTAGGCGGGAAGATGCGGGTGTG
CCGGCCGGACCAAGCTGGAGCTGGCTAGCTTTGCGTGATTCGGTCGATTTCTTTCTGGTA
GTTTTGGGAAGAAGAATCCCTCTCGTCGTCTATTATTGCTGGGGAGATAGCTAGGGGATA
GCGAATTTTACGCTGCGCTGTGGTTTGTCGCCGCCAACGATACGCCTCATTCACATTCCC
GGTGTGCTCATGATGTGCTCGTTTCAAATGTTCTCATAGAAGAAATATTCACGCTAGAAA
TGGTATTTTTTTTTAGGTAAAACCCCCCTCATCTATTAACTCATGATGTTCAAGGGGATA
ATTACATAGTCACGTGGGATGCCAAACCACACATGACGGCCAAACTCCAAATGAATAGCA
AACCTAGCTTTTTTTTTTGAGAAGGAGGAAACGAGCCCCCGGCCTCTGCATCAATCGATG
CATGCAGTCATATTATTAAAAATCCAAAGTAACAAAATAGTTCGAGATAAGCCTGAAGGC
TGAAAATAAAATGAATCTGAAACTAAACTA