morexGenes - Barley RNA-seq Database

Contig contig_43222
Source Contig contig_43222
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43222 (10424 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_43222

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59049	1	726 bp	AK375738	Available	Available	None
MLOC_59050	3	1422 bp	MLOC_59050.1	Available	Available	LOC_Os01g46070.1, FRAME:-3, EVALUE:0.0, 13101.m04729 protein lactate/malate dehydrogenase, putative, expressed
CDS Structure of MLOC_59049

CDS Structure of MLOC_59050

Contig Sequence (10424 bp)

>contig_43222 10424 assembly3_WGSMorex_rbca.fasta
TGGAATATCGACAAAGACTTAGCCATGGACAGGGATGTGTGGAAGTTAGCTATCCACGTT
CCACAGCCATGACTTGGCTTCGAGATCTTATGGGTTTCAACTCTAGCCTACCCCAACTAG
CTTGTTTGGGACTGAAAGGCTTGGNNNNNNNTGTTGTTGTTGTTGTTGTTGAAGCAGACC
AACCAACAGATGTGATGGTGATTTGTGGTGAAAAATTGAAGCAGTACAAATTTCAACATC
TTCTGCAACATATACTGGGAGTCTACTTAATGTCATCACTACCTACCACTACCGGTAGAA
TTTTTCTAGCAGAAAAGGTCAGGTCAAAAGGCTTGCGTGGACAAGGAGAAAGAGAAGGAA
GTGAAATTTGGGATTACCAGCCCGGTCGGCGGGGCAGAGCAGATCGAGCAGGTCGTGGAA
CCATTTCATCTCGACGCCGAGGTGCATGCGGTCGCCCATGGGCACCCCTCTCCCCCGGAA
GAAGTCCGGCGCCAGCGCCATGGCGCCGCCGACCGCGAAGTTGGCCCCGGACGCGAAGTC
CTCCGCGGTCCGCCCGCTCAGGTACGGCCGCACGAACGGCAGGCCCATGGTGTCCGCTGC
GGCACGCCCACGCGAGTTTCAGAATTCAAATTAGTGTTATATATATACAGTACACCGCGC
GATCAATGGACGCGAAGCGGTGCGGTGTGGTGGTGGTGGTGCGCGCCTTACCGATGAAGT
CGACGATGAGGCGGCCGTCGGAGAAGCGGCCGGTGGCGCGGCGGAAGAATGTCTCCCCGT
AGGGCGTTCTGAGCGCGGGCTCGCGGGAGTCGTTGCCGTAGAGGAAGGGGAAGTTGCCCG
TGTCCGCCAGCGAGTCCCCGAAGCTGAACACCCGCGGGACGCACGGCGCCGCGGGAGCCC
CCAGCGCCTGGGCCACTGCTAGCGCTAGCAGCACCGCGGCCGGCGAGAGGAGGCCTCCTC
CTCTCCCGGAGACGGAGGCAGAGGAAGCCATGTATTGTCAGTTTCTGTTCGAGGAGGCGT
GCAGGGGTGCGACTTTCTGCCTTTTTATAAACTTCGGGACTGCCGTCTCCACTCCAAAAG
AATGGTCAAGGAGCCTGAGATAGATAGAACACGGGGCCCACAAATCAGCGGCCTTCCTAG
TTCGTAGGCGTACCCTCTGATCCTCCCTTAAAATGAGAGCATACTTTACTTTACTTTCTT
TTTTCTTGCGTGTACACCAGATCCTAGGTACAGCACGGGGACGGATCTGGAATCGTAGCT
TGATCGTAGGAAAAAGTGTATTCGTCATGAACTCTCCCAGACGCTAGCGATGTATACCTG
TCATCCTGAAACTAGAAAATCGTTTGTCACTTTTCTTTTTTTTTTTTGAGAGAAAAATCG
TTTGTCACTTGCATCTACACATTGGTGAAAGATAATTACGACTAGTTCTCAAATACAGTA
TCAACTCATCTCTGAATGTAATCACCATGGCTGACGAATGAAAAGCTCCTTTCCCCCAAC
ACACAAAAATCTAACACTTGTTCGGCATGCACATTGCTGACTAAACGTGAACCAGCCAAT
GTGTAAAAAAAAAAACTGTCCATTTTTCCCCCATCATACTAGCCCAGGTTATATACAATG
CGAGAGGTAAAGGAGCAGGACTATCACCGTCGTCAACATCGTTATAGAAATTATTGCAAA
AGCGATATAAATAATCCTCCTATCCATGGGCCGACATGAGAATCTGTTCACAGAAAAGGA
ATAGATCGATTGGAACACCAATACTTTGCTTTCATAGAGTGGAGAATCAAATACTGCCCA
CAATTGATTAGCAGTACTAGAGCATAAAGATATTATAGCTTGCAAAACCATCTTATATTG
TGGGACAGAGGTGGTAAAATAAATCATGGAACTAACTGAAAGCACAACAAAAGTCATCAG
CAGATTGCAAGCAGACCGGTTGAACAACAAATAACTTTCCACGCATCAGCAATTGTTCAT
TGCCAGTTCAAAGCTTGACACAAAACTAGCTTCCTCTCGTACAAGTTATGTTTATGTGTG
GCATTACGCCGCCGGAAATCTTATTGTAAAGCTCAAATCTTCCATGCCCACATGATGGGC
AGAAAAAGAACTGGACCAAACCAACAGACCCCTCAACAAGACCTGGGTTTGCTATAATCT
GCAAAATGGCCTAACTAACTTGCATTTGCGAATGCGACGCCCTTCTCAATTGAAGATTTG
AGCTCGCCCTTGAGAGCTTCCAACCCTTCCTTCTCAAACTCCGTCAGCTGACCCAACCCG
AGCACTTCCTCGACTCCATTCTTCCCAAGCCTCACCTGTGTTACATCAGTGGATAATGAA
ATTCCCTTCTATGACCAGCGTCAACAGTTTGTAAAGCGAACAAACAACAGCAAGACCACA
CAGGGTACAGCAAGTCGATCACACTGCCTTGGGCAATAAGCATCACATAAAGGTGAGATA
AGTTCACTTGAACATAATTCAGTGTGAAGAATACTCTAGCAGATTCAATGCACAGTAAGA
ATACTTGAGCAGATGCTTGCAGAGCCTTGTTTCAAAGAGTTTTTGTATCAATCAAAATAC
AACATGGCAAAAATGGCAAGTTGATTAAAAAGTGTGTCAAAAGGCTAATTTTTTGCACCA
GTACTTGCAATCGATTCATAACAATGCCATAAAAGTCCAACATCAATTACCACTAAATAA
ATCACAAACACAAAACGATCAAAAAGGATTTAACAACCCAGCCAGTCAGAAAACAAAGCT
TAACAACAGGCATAACATGATCAAAGAGATTGCAATACAAAATCATATGCATGATAAGCA
ACCACTGCACAAATCTAGAGAAGAATATCTTTCATACTACATCAAATTTGGAGCCATCTA
GATTTACGTCATGAAATCATATAAAATAACAACTGCAGTACACGACACACATAACAAAGT
ACGCATGTACCTTGGAAGCAAAGAATGGCAGCTCGGTGACAGTCGATTGCACATAGGAGC
ATTCAACAATGTCAGGAACTCCGTTCAGACCCTTCAAGCATGCATCTCCAAAAACTGCAC
CAGCATACCTACAAAGGTAAAAAAAAAGAAGCAAAACAAGTAAAAAAATGGTACTAAGTT
GCTAGAGAAGAGGCACACAATCCCCAGTTTGCACGATTTTTTTATCCTTTTTCTTTTACT
TACGCCATGGACAAGGTTGCAGATCCCTTTCCAGCTTTTGCCTCAACGACTTCTGTCCCA
CCGTCCTGTGTCCTCTTGGTGAGAGCCTTGATTTCTTCAGCAGACAATGCATTAGTTGAA
GGAGTTGCCTGTTAAAAAAAAAGAGTTACCTTCAGTTGAGTTATTAGGATTAGGGTGATA
GCACAAATGCACAATATTCAACTACTTCACAATTACTAATAACCAGAAAGATAAACCTAG
ATAGACCATATTTACTTTCATAATTTTGGTAAAAATGGTGTTTACATTACACTAAACTAG
CTACACACTCATATGTCCAGTTGTCAACATAAATGCACTCACTCATGAGCAAGAATAATA
GAATACGTCTGATCTTTTGTTTGGAGATGATCACTTTACATTTCAAGTACAAGAACATTA
TCGGAGCAGAGAAACTTAATTCTTTACTCGGCATAATTTGACTATGAAAGTCCTAGAATA
ATACAGTAAACAAGAATCCAACGAACACCCAGTTCTGCTCCCCATTTCTGGTTTAATGCC
CTATAATGTAGAATACTGTTGACAATGGTGTTGAATTATTTATTACGTTACAAAAGTCCA
TACCTGGGAGAACAGTGGCAAGATGGTAATACCAGCATGACCACCAACAACAGGAACGTC
CACAGCTGCCAAAAAAAACTCCAGTTAAAGGACAAAAATACAGCAACCATACTATTCTTT
TATTCTCTACCAGTCAACTAGATCATACTGTTACCACTTACCATTAACAGGTACGTTAGC
CTTCCCAGCATAGAAAGTCCTGGCACGAACAACATCAAGAGTGGTCACACCAAACAACCT
CTTCTCATCATACGTTCCAGCCTTCTTGAAAACTTCAGCAGCGATTGGAACAGTTGAATT
CACAGGGTTGCTGATCATGTTGACAAGAGCCTACAATACAGAAATACATCAAATTCACAG
AAAGATGAATACAAACAAAATTAAGTAACAAAGGAGGAACTTCGGTTTTTAAATGTATCA
TATACCAATTTCCTAACATAACATACCCTGAAAATGGACACGTTATGCATTGGAGCTAAC
AGCCTGGTTAAAAAAAAATGAAGGAATGGGCCATATGGATCCTCAGACAACAGGTTTGAC
GAATGGGCATGAGATTTATAAACATAAGAAAATGTAACTTTGAAGAGAAAACAGCCAGGC
AATCCAGAGTAACACTGACCTAGTTTTCGTTTGTCCAGGCTAATACACAAAAACATTCAA
ATGCAGGTAGCATTGCAACAAACAAAATGAATATACCAGTGAACCACACTGTCTAACAGG
AGAAAAACTGCAAGGGCCTAGAAAAGGCACACGTGATAGAGCAAAATGTTGTGCATATTC
AGCAGATAAGTATTGGTCTTCGCGCTGATAACCAAACCATATACAATTTCTACACATCGA
ATCATACTTGCGCAATGTCCACGTCTTGAATAGGAACTAGATAGATCTGTAGCGAGGCCA
CGCACCCACGGTAGCCAGAACAATCAACCATGCGAGCAACAGATCTAAATTTTGACGAGA
GTTGAGGATCTTACGTTCGGGCAGTACTTGGCGATGGCGGTGCAGAGGTTCTTAACGATG
CCGGCGTTAATGTTGAAGAGGTCGTCCCTGGTCATGCCGGGCTTCCTCGGGACGCCGGCC
GGGATGATCACCAGGTCGGCCCCATCCAACGCCTCCGCGAGCTGATCGTCCCCCATGAAC
CCCTTGGCCTGCGAAAGCCCAAACCATGCGTTAGATCCGACCGAACTGAGCAGCGCGAGG
AGGACGATGTCGGCCGTGGGGTACCAGGGCAGGGGAGTTGATGTGGGAAACGTCGGCAGC
GACGCCCGGGGTGGCCGCGATATCGTAGAGAGAGAGGGAGGAGACGAGGGGGTTCAGCTT
CATGAGGAGAGACAGCGGCTGCCCGATGCCACCGGCCGCACCGAGGATGGCCACCTTCCG
CTCCTGCTGCCCGGACGCGGAGGAGTAGCTGCGGCGGCGGAGAAGCTGCGCGGCGGATCT
CATCACCGAGGGCCTCATCGTCGCTGGCTTGTGCGTCGCGTGAGATCTGGGTCGATAGAT
GCGAAGGGAGGGGTGTGGACGGACGGCGGGTGCTGATGTTTTGGTAGTGTATAATAGACG
GGGCCAGCAAAGTGATGGATGGATGGGATGATCTTAAACAATAAAGCTGTTATGAGAAAG
TGTTTGAGGGTTTCGAGATAACCATTTCCGATCCAACCTTTCCGGGATTTTTCTTTCCTA
TGAGTACTTTTAAAAACTAATAAAAAAACATGTATGTGCATTGAACCTTGATATTAGGTT
TTTTTTAAATGATATATTCATCTTTGTTGTATAACGAACACGAGAGATAATAAAAATCAC
ATCTAGAATCCGTGAACCACCTAGCAACGATTATAAGCACTCAATTGAGCCGAAGGCGTA
TCGCCGTCATCGCCCCTCCCTCGTCAGTTCGGGCAAAACTTGTTGTACTCCCTCCGTCCC
AAAATTCATGTATTAGATTTGTCTATGTATGAATGTATCTAGTCACGTTTTAGTATTTTG
ATACATCAATTTCTAGACAAATCTAAGACAAGAATTTTGAAACGGAGGGAGTAGTAAATA
GTCGAGAAGTCGTCGTACTAAGACTCCATAGAACCAACGCACTAAAATAGCAGCCGTCGG
TGATGAAGGGTAACGTAGATTGAAAGGATCCAATCTAAAGGCACACGAACGTAGACAAAC
GATAACCAGATCCGAGAAATCCATCAAAGACGGATCCATCGGAGAAACACCTCCACACGC
CTACCGATGATGCTAGCCAGACTACTGAAGCGGGGGCTAGGCTAGAAGAACCTTATTCCA
TCTTGGGGGGGCATTTGGCGTCTTGTCTTCCTAAGTAAGACATAAAACCTAACAAAACTC
AAAGAAATATCTAAAAATTGAACCATTCCGTCGAAAAGGGTCGGGATCCACCGCGTCCCC
ATGGCCCTTAGGCCACAGGAGACGAGGCGGACCGGCTACGGCGGCATAGAGAAGTGAGGG
ATCCCTAAGTTTAGGAGAGGAGCTAGCGAGGAAATCAGTTGGAGTCCCAACCTTGATATT
AGGTTGCATGTCATTGTTTCGGGCTTCTGAGCCCCACTCGTGTCTTGGGTGCAACCCCAA
CTCTCTCGAAAGGTCAAGTGACATTATTGGCGACGGCTATGCTTGGAGCAGCAGAGGCTC
GATCAGCAGCCATTGTCACCACCCATGCCCCGTATGGCCTCGTCTGAGATGTATGGACGC
TACTTCAGTTGCATGGAGGAAGACCACCGCAAGAATGGTTGCACCAACAAGACGACGTGC
ATCATATGTGGCTTGGTTGGGTGCTAATCCAAAGATTGCAAGCGACCCGCAACGTGTGGT
AGGAGGATGAGCTCCGTCGGGCTTCTTTTGCAAGCTGGGGCGTCATGACCGCCCCGCCTC
CTGTGTCGCAAGCTTCCCTCACTATCGCACCCAGGGTATGCACTATGTAGTTCTAGCATC
CTCACTAGCCTCCATATAATATCAATCCTAAGGCGCAACCTTCGCATAATGTATACATAG
GAATGTGCACGTCGTGTGGTGAAACCGTTAACATCACAACACATACAACGAAATATTCCA
GAGTCAAATTTAATGAAAGAATACAAAAAGGATCTTTCGACCAGGATACAACTCATACAA
TGAAAGAGGATATATGTTAATTAGGTAAGAATACAAATTGCCTTAAAGAAGGCTTAAACA
AAAGTAAAGGGACACATGTCCTTGCCTAGACCACTATTTTTGGCTAACTTTCTAGCCTCA
TTCATCAACACACCCATTTTTCTGAATTGTTGTGGCTAGATGGTGGCCATCCAAGAAAAA
GGTAAATTAAGCCAAATGAGTGCTCGTTTGTAATCGCAAGACCTGCACATACCTAAACTA
TATGCAACATGTTTCAAAGGAAAGGGTGGTGTGATTTAGCGACAAGCACTAAGCATTCTA
CAGAGACACGCTACAACTTGCGTCGATTACAGATAAGAAGTTATATCACATAAAAGTAAT
GGAGTGGGTCACCACGAGCCTATTCACCTACCCATACAAACATAACACTGCCTTGTTTTC
CCCTCGCATCTCCCACGAGGAAGAACCCAAAAGGCACTCACATGGTTGGCAAGTTTTAAT
GTTACTAAGGTTGAGGTTGTTCCTATAATCAAGTCTACAAGACCCAAATCATTGATAACC
GTGAACACGATTATTCAGATAGATTTATACCTGCAGGGTTTCACTACTGGAAGGACACGT
TCGTGCTCCTTTATAGGCTAGTCGAACGCATTATATGCGCAAACTGGTGGTTACAAACAA
CATGACACTCCCCTAGCTACATCTAGGTCTAGGAAGCCACACGTTGAGTGGAAATCCAAA
TCGAAGGCTCAGCCGAAGCTCTGAATTGATCTCCATATGCAAGGACGGTTGGGATGGTCA
TAGCTCTGAACCGAGGTGTCCACCTATAAAAAATGTCAAAATTTTGGACCCACCGAGGTA
TTGTAGACCCAAACTAGGCTCAACCGCCTAAGGTCTCAAAGTTCGAAGAAGCTAATGTAA
AATCAACTTGCGACCCCTAGAATAGTGAATTTTTTGGTACCGATCGAGGGCGGGAGCCCA
TAAGCCATACCCACACATATTTAGCGCACTCAATCTTGAATCAAGTTCCCAAGAACTCGG
GTTCTAGTCGGCTTGAGTTGAACAAAACACTTGGCATTCTGTCTGGACTTCCATTGTTAC
TGAAGGAGCACAGTGCCCCCATGTTTGGTTTGGTAACTAATGGAAATCCCTATGGACTAA
TGATTGCCTTAGCTTATACTTGAAGGGTTTGCCAATAGTTGATGCTTGAAAATCATATGT
TGACATCAAGGTTGCATATAGAAGATTATGTGATGAAAAATGTGTTATTCAAGTAGTTAT
CCAAAGATTGGCCATGTGAGAGTTATGTCTACTGCAAGCATGTCTTGAATAAGAAAATTG
TGTGAACAATCATGTTTACCTTCAAGACATCATTTTAATGAAGAGAGAAGAGAAGATACA
AGGTTGATCAATATTATGTGCTAAGTGCGGATTCAAGTTGATCAACACACAACGCGTAGA
AGATGTACCGAGTGGGATCAAGTGATCGCAGAGTATGGTAAGCATTGTCCATTACGCTTT
TGTGTACTAACCCATGATCTATGTGAGGATTATATATGGGGTTTGGTATCTTTCAATGGG
TTTGCATCAAAAGGAAGATCTCATATAACTCATGAAGGATGACATCAAGATGTGATCGTC
ACAAAGTCAAATCAATCAAGAAAGGTCGTCCAACTCTAGGTGGTCAAGATCGTCATCATC
TAGATCAAGTGGACCATGTGCAATGAAAAGGTATAACCTCGATAGGTTTTTATCTTAGTG
GTCTCATGGCGTTAGTTGGGAGACCGGGTTATAGTATTGATAGTCGTACTATCAAGGGGG
ATCTCGAGTGAGTACCTTGATTGTATCGTTCATAGTGAGCTCAAACCATTGCATCCTTGG
CAACATATTTATGTTTCTTATTTGGTTTTTATCTATGTCAGGTTTTAGAGTTTGTGTTCG
TCTTCATGTCAAACTCAAGTTCATAAAAAATGAAGTTCGTATACTTCATCTTTGTGTTTT
TGGTGTTGGAGTTTTTGTAGGTTCATATTTGAGGAAGGTTCTCTTCTTTATCTTATTGGA
ATTTCGTGATTTGACAACTCTTGTCGTTAGCATTCCATCAAGCTTGATTTTGTCAAAGTG
AGAGTTCATTTGCAGGAATTATGGCAGTTTTGGTCTTACCTATTTTTCTTGGTCCAGTTG
TACTGCTCAAGCTCGCGGTTGTACCGGATGTCCATTTGTTCATGAACAACTACCGCACGA
AGGGTGATTCCCTCGGGTCATGCAGTGCTCTAGGTCTAGGTGGTTTGGTTGTACCATTGG
CTCTAGCAGTCGTACCGCCACAAACTTAGCCACTCTACTTAAACACTTTCGAGGCGGTTG
TTCCGGTTCATGTACCGCCCCATGCACCGAAAAAGGGTGATTCCTTTCGGGTTGTTGTGC
AGTACTCGGCGGTGATACATCTCCAATGTATCTATNNNNNNNNNNNNNNNNNTGCTATTA
TATTATCAATCTTAGATGGTTTATATGCATTTATATGTTGTTTTATATCATTTTTTGAAA
ACTAACCTATTAATTCAGTGCCTAGTGCGATTTGCTATTTTTTGAGTGTTTTTGGATTTT
CGGGAAATTAGAACCAACTGAAGTCCACATGTAATGAAACTTTTTGATGATTTTTTTGGA
CAAAAATAAGACCGGGAAGCTTCGGAGGGAGACCGGAGGCCACAATGGGTGGCGCCAAGC
CAATAGGGCACGCCCAGGGGGTGGTCGCGCCCTGATGACTTGGGACCACCTCCCGACGCC
TCCGACATAATTCCACTCCTATAAATCCTAATATGTTGGGAAAACACCAGGGATGCACCC
AAATTACTTTTCCGCCATCGCAAGTCTCTTTTTCACGGTGATCCCATCTTGAGCCCTATT
TCGGTGCCCTGTCGGAGGGGGATTGATCACGGAGGGCCTCTACATCGACAATGTTGCTCC
CATGGTGATGTGTGAGTAGTCTACCACAAACCTACGCGTCTATAGTTAGTACCTAGATCT
CTCTCTCTCTCTCTCTCTCTAGGCGGGTTTGTTGGGATCAGATGGATTGTGGGTTTATGT
TCATATTATTCATGAAAAGTTTTTGAGTCATGTCTAAATTCTTATTTGCATGATTATGAG
CTTCATATTTCTCTCTGATCTATCAGTTTGCTTTGGCCAACTAGATTGATTTATCTTTAG
TGGGAGTGGTGCAGTGTGATGGGTTCAATCTTGCGGTGCTCAATCCCAGTGACGGAAGCG
GACGTGACACATATTGTATTGCTGCCATTAAGGTTAAATTGATGGGTTTTATTCATATTA
GTTGAGTTTACTTCATCCACATCATGTCATCTTGCTTCAAGCATTACCCTGTTTTTACTT
AATACTCTAGATGCATGTTGGGTAGCGGTCAATGAGTGGAGTAATAGTAGTAGATGCAGG
CATGAGTCGGTATACTTGCTTATGGACGTGATGCCTATATGTGTGATCATTGTTGTGAAT
AAAATATTACATGACTATGCTTTCTATCAATTGCCCAACAGTAA