morexGenes - Barley RNA-seq Database

Contig contig_43194
Source Contig contig_43194
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43194 (8111 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_43194

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_59014	1	888 bp	MLOC_59014.1	Available	Available	None
MLOC_59012	1	1109 bp	MLOC_59012.1	Available	Available	None
MLOC_59013	6	3792 bp	MLOC_59013.3	Available	Available	LOC_Os01g42030.1, FRAME:+1, EVALUE:0.0, 13101.m04316 protein mitochondrial chaperone BCS1, putative, expressed
CDS Structure of MLOC_59014

CDS Structure of MLOC_59012

CDS Structure of MLOC_59013

Contig Sequence (8111 bp)

>contig_43194 8111 assembly3_WGSMorex_rbca.fasta
TTCTTCAAGACATGCTTACAATAAGCCCAACTCTCATATGACCAATCTTTGGATAAATCC
TTGAATACCACCTTGATCATCACATAAACTCCTTGAAACCAACAAATGGACTTTAAGAAA
TGCCTATGGACACATCCTTCGGATATAATTCAAGACAACCATTAGTCCATAGAGATTGCC
ATCAATTACCAAAACCAATCATGGGGCAACAATGTTCTAACAAGTCAGGATCGCTACTTT
GCACGATTCTGACTGCCCTGCCCCCTCCAACGCGCTTCCTACCTGGCCCCAGCTGCCCGC
ATTCATGTTGTTGTAGAGCGGTCGCTACCCATTGAAGAGCGGACGCAACCTCTCACTAGC
GCTGACATTGAAGCAGCTCGTTGGCCGAGGGCGGCGCCCACGAGGCGTCTCCGGTGTTCG
CGCTTGTTCAATGTCGGAGACGTGTGATTGGACGGGACGGATATCCACCACTCTCGTTCA
ATGCCACGTCCGTCCGTATGCCGCCATTAAGCAGGCGCACCGACCGAGAAACCCACTTTG
GCGTCCCGCATTGACGCGTGGCATCACCGAAATCCGCCATTTAAGGAAGGCCACACCCAG
ATATCTCCATAGCACACCACACCTGCTCCACATCTCCTCCCGTGCACCACATCCGCCATG
ACTGCACGCGGCGAAACTTTGTGGGATGCCTTTTCCCCAAAGATGAAGTAGGAGGTGGCC
GCCGTTGCCGCCTCCTGGCGGAGCCGCCGTGCCAGGCAGATCGAAGCCGGCTTGCCAGCC
AACTCGCCCGAGGTCTTCGATGACGACGAGGATGACACCACAATAGAGACGAGCTCCGAT
GACACCACCCTGGCTCCCGCGCCTCCTATACACTCCGGCTACACCATGTCGCAGGTGCAG
GTGCACTACAACGCCGCCATGGCGAAGGGGCAGCCTACACCGGCTCAAACATCGGCATTA
GAGGGGCGCTAGAGCAACATCAACTCGCGTTAGGTTAGATCAACGGCGAGCGTGCAAGCC
AAGAGGCCCTGGTGGCCATGGCTGCGACAAACTCGAACTTCGTCGCATAGCAGCGTGCCA
TCTACGATGCCATCTGCGTTCAAGCCACCGCTCGTGAGGAAGTGGACGCGCAGGCGCAGT
TGCACGCAATCGCGAAGGAGAACAACGCCAATTGTGCCTCCTACGCGCTGCCCACGAACT
ATCGGGTGGTCCGATGAGACGACGACATCCAAGGCGTCATCATTTCCCTCGTGGACCTCA
CCTCCAACGACGAGGGACATGGCATAGACTCCTCCGATGATGAGTAGGACACGGAAGGCG
ACATGGCCTGATATCCCATGTGGGCCAGTCCGTCTCTCATGTTCTACTCTTCCTCGTGAG
AGACCGCACCTTCACTTCATCGGACTTATCCCGGTGCTCATGGAGACGGCGGACGGGAGA
CGACACGGGCTTGAACGCCGACCACCACCATTGTATAATAGGTTTAGGGACAAGTCTTTT
TTAATTCTAAATATTCAAAATGTAATGGAATTCATCGTGTTTGCACGAAATCTCGACTTG
TTTGCACGAATTTCGTCGGTTGATTCGAGTTGTTGTTAAAATATTTACGGTTACGGCTGG
ACATCGTCCTCCCGCATTCGTGTCTGTGAAGTGGTTGATTCGAGTTGTTGTTAAAATATA
TACGGTTACGGCTGGACATCGTCCTCCCGCATTCGTGTCCGTGAAGTGGTCCCCTGTTCG
TGAATGGATGCGGGAGAAAATTTATGTGTTGCGTTGGATATGCCCTAAGGCTGATTGTAA
TGAGAGTATCATATACTAGTATTATGTATATGATATTAGTGTATGATACTACATTCGTAA
CGCATAGTATCATATACTAGTATTATGTATATGATATTAGTGTATGATACTACATTCTTA
ATGCATAGTATCATATACTAGTATCATATAACAATTTATTTATTGCCATACATGACACAT
AGTAGCACAACATCTATACCTACTAATAAAAGAAATAGGTATTCTTAGCCCGTCATACTT
TTTTTAGAAACCCCTCTAAGTTTTTGGTAATCAACCCGCAGTACACATTAATTGATTTTT
TGAAAATCCATATCTTTTTAACGCTAACTTCAAATTTAACATGTTATATATGAATTTGAT
TAGTAAAATATGTAGAACCTGAATATGTATTATTTTACATGTTAACCATTTAAAAATGCT
ATTTACGATAAAACCTTAATCGATAGCGCATGATCAGTCTTTCCTTCATATCAGTGCCGA
TTCGAATTGAAAATAAACGCTTTGGCAAAACTAGGATTGAGAACAAAAACAATATCTATA
ATCACGCATGCACGCCTCGTCAAAACATCACAGAAAAAGTAAATTTATCATTTTATGTCG
AGAGGGAGACATCTTAAGATTGACAACATTCAAACATGATGTTGTGATAGTGTGAACACT
AAAGTCAGCGTCGACGAACGTGGGAAGAAGGGTAAATAGAAATACAGATGGGATGTCATG
TATTGAAATAAAGGATATGGGCCTATGGACTCATGATTGTTAGATTAGTGAGTGTTTTTC
TTACCCGTTGCAACGCACGGGCTCTTTTGCTAGTTTAATGTGATACTCAATCATTTATTT
TTTTCATTTAATTTTGTGTCACATCATCAAATATTATGTCTAGTTGACAATGCATAATAC
TACTTATGATACTACCATTACGACCAGCCTAACAATCCCTATACGAGCCCTAAATACCAA
ACATGAGAGCAAGTACAATAGTATAGCCAGNNGCTGGCTATAAGCCATTGCCATGTCATC
TATAGCACATCTTATAGCCAACATGTACAATAGTTCATTGCAAAAATGTACTACTTTTTT
ATTATATGGTCCATCTTTCATACTCACAAAAGGCCTAGGAGCACGTGCTACAGCTGGCTC
TTAGCTAAGAATCCGCTTACCTTCTCTATCCTTTTCTCTTTCCTCTAACTAAACAAAAAT
ATATTAGTTTATTCCTTATAGCCAGCTGACTCAACTTTATTGTACTTGCTCTGAGTAAGA
TGTTACCTCGAAGTCCTAAGGGCTCAAACCTCGGTATAATTTTCTCGTGTGAATCCCATA
CCTAGATCATCCTCTTGTGCTGCCCCGAAATCCTAAAAGTTATGAGCATTGCCACGAAAT
CCCCGTGACAGCCTCCATTCCGATCAATGTCTCTTTCTTGGACCCCACTATAGAGCGGCG
CCGCATCTGGGCATTGCCGTGCAGCGGCTATGCATGCATGTCGCTATCGTGCATTGTTAA
AAAGGCTGAAAGATTCTCTCTAATGCTTGAAATTTAAAAAGTTTTATCTTTAAAACCGTT
AATTCAATCGATGATCTGTTTTCACCGTTTGCTTTGTCGCGACAAGGTCTTCGAAACTAG
ATCCCATGTCGACATGTTTCTACAAACTTTTTTTCCTTTCGTAATTGCCACATTGTTCCA
CTCACTTGCTATATTATTAACCACTTACTTGCCCAATAAAAATAACTTAATTGTCATATT
TTGTGATGTCGTTTCGTGCAAAGATTGTCGATGCTTATAAATGCAGTCCCCAATTTTTTT
ATGTGCTTGTCATTTTTATTCTACTAAGTTGTCATGTGGTTTCATAAAGCTTGTAGGTGC
TTATAGAATCACAGTTGCCACATATATTTTTTGTGCTTGTCATTTTAATCCTATCTCGTT
ATCATAGTATCTCGTACAACTTGTTAGTCATTTAAAAAAATAGTTGTCACAGTCTTTACT
GTATTTATCTGTTGAATTCTATCCTCGATTGTTATGTTGTGTCGTAATAAAAGGACATTT
GATTCTTCTGAAACGTAGTTGTGGTAGTGTTTTGTTGTGTTGGTCAATTAAATTCTACTC
AAATCTCATATAAGCTTGTCAGTTGTTATAAACACTATAGTTGTCGTATTATTTTGCAAC
GCTTGCCACTTAAATTATAACTAGTGGCCAGTTATTTTATAGCGTTCATGCACAACCGCC
ACCTCATTACCACGAGTATTCTATGTAGTGAAGAAAAGTAAACCAAGCATGCATGCATTA
CTCATTTCAGATGTGTGTGTGAGAGAGAGAAAGAGTAGGATGTGGTAGTGAAAAAAAGCA
CCAGGACAAGCAATGCATGTGCCAGGTAGCATCACCTCACGTCACTGTATCATGCAAAAG
CAAACAGCTCTGTGTAGTATAAGCCTTCATGACAATATATAGCTCTCCTATAGCAAAATA
GTGTTGCACTATGCGACGCACTGTAGCATTACTGTGACAGAATACGACGCTGTGCGGCGT
CGTAACTTAGATTTTCCCCTCTTTCTTTTGGCATCGGGGAGTGGAAGAAGCTCTCCGTTG
TACTACTACCAACAAAACCGAAAACAAAGCGTTTCTTCCCCGCAAAAGGAAAAACAAAGC
CTTTCATCAAAAGAAAAAACAAAGCAAGTAAAGAACGGCTGGCGGGATCCCTCCCGCGGT
ACGCGGTTGGACGCATCCACTCCGAGGGCGGCGGACGTACGTGGAGAGCACCGCGCCTTA
GGCTATGTTGCTGATTGATGATGATGGGGCCTTCGCTTTCAGCGATCGATTGGATGGAAT
GGAACATCCTCTGTTTGGGCAAAGCTCTGCACGATACGTTGCCTAGTAGGAGTGGCACAT
GCTTGCTTGGCGCACTGGCACGTCGGATACCATTTCTGTGGCAAGTGAAAAGTGTCAATT
CCTACAAGCACGAGTCCACTGGCAGTCGTACGCCGTGCCTAATTGAAGTGATGTTTTCGC
TTCCCGGCCAATCTCTCGCTTTCTTCTCCTAACCCAACCAAACCACGGCACTGAGGACAC
GTCAAGCCTCATGACTCGTCATTCTACACAGCCTATTCGACTCGACCAAAAGTAGCACCC
CTGGTCCATCCTGTTCAATCAGAAAGTTAGATGCACGCGATCAAAGTGCTTTTTTACGCT
GACCAGCAACCCTGTCCATCCTTCCTGATGCTTACAACAATATTATTATTAATGAAATCG
GAGCTGTCAAGCCTATTCTTCTCTAATAAGGAGCAACAATCATATGTAATACGACTGTTG
TACGCATAGAAGTATGTTTAAAACACAGAGAATTATGTGATGCAGAATGGAGTGCGCAGG
CATGCAGCCCATCCATTGGCCCAGCCTACTTCATTAGCTTCCAAAAATCACAAAAAATTG
TGTAAAAAGTGAATCACAAACTGAGCTGCTCCTTCAAACTGTCATGTCATGGTGATCTAC
GCAGGGAAACTGTGGCAAGTGGCAACACATGTTTGTTCTTTCTTTCTTTCTTTTTTAGGG
TGGCAACACAACACACACGAAAATGAAATGAAAAACCCCTTCCTTCGCATGCACGATACC
TAAATCAATGCAACTCGGGCGTCAACCGTTGTTAGTCAGCAGCAGCCGGAATCTCGCGTA
TGCCGGGCATGGAAACGTGACGGGGACACAAGACCAAAAGGAAACACGTCGGTTGTGGCT
GCAGAAATTTCCTATGGAAACTCGAAGCCAACTGCCGACAGCTACAAGTGGCATACTATT
CATCACGCAAACTTGGCCGTCAAGCCTATGAAGACAGTTGTAAACTTGCTTTACCATGCG
CACGGTTCCAAAAAAGCATAAAAAACGTCATTATGCGTGTGCAACCATTCCTTGGCAGCA
TGTTAATCATACATGTGTCCCTCGTGTTGTACACCTTCAACAAATTTGAACAGATTACCC
AATACTGTAGCAATAAAAAAGCAAATTCAAACAGGAAATTTGAACTGCTAAAATGACATA
TACTGTAGTATGGTAGAGTACCTGACAGCACCAAAACAAAAGCATGTGTTTTCACTACCG
TACCGGAGGCCTTGGAAACAAATATGCTCATGATTCTCAGGCACATACGTACTACATCAT
TTGGTTTATCGACAATGCATTCGAGTATCAACAGGTATACTAGTACTAGTACTCAACAGC
AGGCATAAAGAGACCTCAAACTCAAAGTGGGGGTCCAGAAGTTAGTCGGTTCTGCTTGCT
TTAAGCTTTTTCAATACCCAACCATGGACATTTCTGGCGTTTGTTTTGCACGGCCACCCA
AGGAACATGGCCGTGCCATTGAGAAAAAAAACCATCAAGTAGTGCGATGCCATTTTTCTA
CTTTGGCCAAGGCCTCCTTTCTGGACAACGCACTACCAATCAGACCAGTATTATATAGCT
TGACTGACTCACCCGTCACCCAACCATTTCGACGCAAACCAAACCAGCTATAAAACCCCA
CGCCAGCTAAACGCCCCCATTCAACACCGACCAGCACCATCACTTGGAAGGTTCAAATCT
CCCAGCACTACTTGGTCGTGAAGGAAAGTGAGAGGCGAAAGCAGAGGAGGCCTGTAGCCA
TGGCCTCCTACGACAAGGCCATGGAGTCGTACAAGAAGGCCGTCACCACGGCGGCCTCCC
TCGCGGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAATGAGCTGGTGCCGTACGAGGTGC
GTGACCTGCTCTTCTCCGGCATGGGCTACCTTCGCTCGCACATGTCCTCCCAGCACACCA
TCATCATAGAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTACGACGCCGCGCGGGCGT
ACCTGGCGACGCGGATCAACACCGACATGCAGCGCCTCCGGGTCAGCCGCGTCGATGAGA
CCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCAGATGTCCACGAGGGCA
CCGAGTTCAAGTGGCGCCTTGTCTGCCGGGACAACTCCAGCGCCAGCAGCAGCAACGGCA
ACGGCCGTGGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCCTTCGAGATGAGCTTCC
ACAGAAAGCACAAGGACAAAGCCCTTACCTCCTACCTCCCTCACATCCTCGCCGTGGCCA
AGAAAGTCAAGGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAGGTGAGTCGTGGT
TTGCCATTGATCTCCACCACCCATCAACCTTCAGCACCCTCGCCATGGATCACAAGCTCA
AGCAGTCAGTCATGGATGATCTCGAGAGGTTTGTCAAAAGAAAGGAATACTACAAAAAGA
TCGGCAAGGCGTGGAAACGAGGGTACCTGCTGTATGGCCCACCTGGGACTGGCAAGTCAA
GCATGATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATCTTGAGCTCACTG
AGGTCAACTGGAACTCAACACTTCGGAGGTTGCTCATTGGGATGACCAACCGGTCAATTC
TTGTCATTGAGGACATTGACTGCACTGTCGAGCTGCAACAGCGGGAGGAAGGTCAGGAGG
GCACCAAATCCAACCCTTCAGAGGACAAGGTTAGATAGATACTTGGAATCATACTCCCCT
TGCATTGCTTAGTTCCTTAGTTTCCTTTCCATTCTGATGTGTTATGTGCTATCTCCAACA
GGTGACACTATCCGGGCTACTCAATTTCGTTGACGGGCTTTGGTCAACAAGTGGAGAGGA
GAGGATAATTATCTTCACAACAAACTACAAAGAAAGGCTCGACCCTGCGCTTCTGCGCCC
TGGCAGGATGGACATGCACATTCACATGGGGTACTGCTGCCCAGAGTCGTTTCGAATCTT
GGCCTCCAACTACCACTCTATAGATCACCATGCCACATACCAGGAGATAGAAGAAATGAT
CAAAGAGGTCATGGTGACTCCAGCAGAGGTCGCGGAGGTGCTCATGAGGAATGAAGAGAC
AGACATCGCACTTGAAGGTCTTATCCAGTTCCTCAAGAGAAAGAAAGATGGCGCTGGCAA
AATGGAAAATGTGGACCAGGTGGCGAAGGAGGAAGAACAAGAGAAAGAGATGATGACGAA
AAGTGATGTCCTAGACAATGAAGATCAGCAAGATGGGAGCAAAGAATGATGCGTATACAG
TGTGAGTATCATATAATTAGTGCCAGAAACTTCCAGCAACAATGTATCGTTTTGCTATAA
TAAGAGATCAATTTTTTGGTAACAATATAAATATCTGGTATTGTGAACAGTTATACTACT
CCCTCCGTCCC