| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_43190
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_59003 |
1 |
1482 bp |
MLOC_59003.1 |
Available |
Available |
LOC_Os01g47180.1, FRAME:+3, EVALUE:5e-71, 13101.m04855 protein 3-5 exonuclease domain-containing protein, putative, expressed |
| MLOC_59044 |
5 |
1966 bp |
MLOC_59044.2 |
Available |
Available |
LOC_Os12g02810.1, FRAME:+2, EVALUE:0.0, 13112.m00227 protein protein kinase domain containing protein, expressed |
| MLOC_59070 |
9 |
3929 bp |
MLOC_59070.7 |
Available |
Available |
LOC_Os01g73580.1, FRAME:-2, EVALUE:0.0, 13101.m08029 protein glycosyl hydrolases, putative, expressed |
CDS Structure of MLOC_59003
CDS Structure of MLOC_59044
CDS Structure of MLOC_59070
Contig Sequence (9252 bp)
>contig_43190 9252 assembly3_WGSMorex_rbca.fasta
TAGATAGACATCACCATGATATGTCTTCGTGTGCATANNNNNNNNNNNNNNNNNCATGCA
ACGTTCCCCAACAGGTTTTTGATTAGAGACCCATGGTAGTTCTGTTTTGACTAGAAAGAA
ACCCGGGTAATAAAAATCAAAGTACGACAAAAGAGTTACAAACTCTTTATTATGGCTTGT
ACCGAGCCTAAAAAAGCCCGTGGTATAAAATTTAGGCCCATGTTCGACCCGACCCGACCG
TCGGACCTAGTTTCGGACTCAAGCCCGGTCCGAACCCGAAGAAGCTCGACCCGGCTGGCA
AGCCCGACCCAACATAGGCGTAAAATTGAGTTTCCGCATGCCGGGGGACGATATTCACAC
TTGATTCTCGGGCCCGGGCCCAGCCCGGGGGCAAGCCCGGGACCGGCCTAACCCGAAAAT
TTTGAGGCCAGGTCGGGTCAGGCTGGCCTAGTCGGATTTTTTATGGTCAGTTATATTGCA
CACCGGCCTTGGCGCGATGGAGAACATACATGTCGTTTGTCCAACTCCATCGCGAACTAT
TTTTGTGTTTTTTTCTTTTGCAACTCCGCCTCGCGCGTAGATTGAACGGCTGCGTGGATA
GATCGAACGGTCGTTCTCAGATGATGGATGCTTATTAAATATTCTTTGATGGATGTGTAG
CCGCCTTTTTTTTCAAAGGAGGCCTACATTTATGTCGAGCCAGCATGAAAAAGTGTCGAG
AGAGAAGATAGCCAATGGTTAGGGATGGTCAAATAGCTCCCTTGAGAGGACATCTTGATC
CCTTCCTTCTTGCCTCTGTGATGTCATCCCATCACCTGCCATTGCCACCTTTTCTTTTTT
GCTACGTACTACTACTCCGTACACAGCTATAGTCGTGACGGTAGAGTGTGCTTTCCTTCA
GAAGCCCTCCAGCATCCAAACTCGTTTCGTGCGGAAAAAAAGGTGTAATAATTCAAACTT
GTTCATCGATCCAAAAAAGTAAGTATATATCGATACGTTTATTATAATTTTTGCAATATA
AAATACGGTCTTTGAGATGTCTCTCTCCGGACTCCGTTCCGGCCGGTTCTCCTCTCCTCT
CCTCTCCTCTCCTCTCCCGTCCCGCAACAATAATGCCCTAGCTCGCCGCCGCGTTTCTCG
ACGCCGTTCGTTCGTTTCCTTTCTTTTCTTATCATCTCCTCCCGTGTGCGTGGCCGTGCC
GTGCTGTGCTCCGCTTTATTGACCATTGTCGCTCGTCCAACACCTGACACAAATCCACAA
TGGCCACCGATACGTTCGTCACCGTCGTGGACTTCGAGGACGACGAGATCACCGCCACCG
TCACGTCCTCCGGCGACGCCGTGAAGGCCTGGCTCCGCCAGATCCGCTACGTCTACCGCT
GGGTCTACCACAAGCTCATCGTGGGGCTGGACGTGGAGTGGCGCCCCAGCTTCGGCCGCG
CGCAGAATCCCGTCGCGCTACTGCAGCTCTGCGTCGGCCGCCGCTGCCTCATCTTCCAGC
TCCTCCACGCCGACTTCATCCCGCTGGCCCTCCGCCGCTTCCTCGCCGACCCGGACTTCC
GGTTCGTCGGCGTGGGCGTGCAGAACGACGTCGACCGCCTCAACGACGACCACGGCCTCG
AGGTCGCCAACGTCGTCGATCTGCGTAGCCTCGCGGCCGACGAGATGCGCAGGCCGTGGC
TCCGCCAGGCCGGGCTCAAGGACGTCGCGGGCGTCGTCATGGGGGCCAACCTCCACAAGC
CACGCAGGGTCACGATGGGGCCGTGGGACGCCTGCCGCCTCTCCCAGGAGCAGATCCAGT
ATGCCTGCATCGACGCCTTCGTCTCCTTCGAGGACGGCCGGAAGCTCCTCACCGGCGACT
ACTCCGACTCCGAAGAGGAGGATGACTCCGGCTACTGAGGCCATAGATCGATTGCCTCGT
CCCGTACGTGTCCTGCAAATTCCACCTGCTGTTCCCAAGTACTACCTGCCTCGTTCCGTA
CGTTCTTATATTAGTTTATAGAGGGAGTATTACTTGTGCGTTTAGATTTAGTTGTTCATC
TCGTAATCCTAAGTTAGGGATGGTTTATTAGGAGTTTATCTGCGATGGTAATGATGCTGT
GACTAGTACTAGCTTCTAGTGGTTAGAACTGGCTTGGTGCCATGACCATTTGTGCCGTAT
CGATCAAGACCTTTTCTCTTTTCTTTGTGAATTATGCTGCTCATCTATGCTTTTTGTTGG
AGTTCTCTGCTGTGCTCTCTGCTCTACTCCCAAGTGCTACCACCAAGCATAATTCTATTT
CTGGCACCTCGAGTTCTCTGCTGTGTCTGTGTGAAAATAATTATGTGTACGGTGCACCCA
TCTGTCCTAACAACTCAGGGAGGCGTGCTTCATCTAGTAAAATTATATGGGTTGTGATTA
GCACGGTATACATAGCGCAAGATTTCTGATTTTATAGTTGCATACTGCTAGGATTGTCAC
ATAAGATAGAAATCGAAAGGAAATGTTTGTCTTTACTTTATCGAGAAATGATCTTCTAGT
AACAATATTTCTCAACACATATTTCAAAAAATTATACTAAAAACAAGACCCAAATAGCCC
ATTGTACAATACTTCTTATTACTATCTCTAGATTACGTGGCGTGGGGCTAAAATAGGTCT
GTCCTATCAACCACGTCCTCCGATCCTAAGATAAATCTTTCTAAATATTTTACTATCGAT
TATATACAAATATATCAAAAATAATTTGCTACCCATAATGATAGCTATATGACCCTAATT
TTTATCTTTAATTATTTTAAACGATGAAAAATAACTCTATAACGAAATTATCACGACTTT
GGACCAGTAAGGTAAGCAAAAAGGCACTTGTACTAAAAAGGCAGAAAGGCACTTGTACTA
AAAAGGAAAACGAAAGACCGAGAAAAATGAGAAAAGGCCCTTTATACACAATGAAAAGGC
ACTTGTTTTAAAAAGGTAATAAAGTAAATAACGAGAAGTGAGAAAAAGTCATTTATACAC
AATAAAAATGCACTTATACGAATGTCATAAGAAACCCCACACCTCATATATAAAAAAGAC
ATTTATGCTAAAGGGTGTGTAGCTATCAACATGCATAGAAAATTGCCTCTCACACATATA
TATATATAGACATTTTTTAGAATGTAGATTCATCCATTTTTTTTAGTAAGTAGTCTATAA
TAAAATCTTTAAAAAGACTTATATTTAGGAAGGGGGAAATACTATGCATACCTTATTCTC
TTCTGGGTAGAAATCATAGTGTGACGTGGGTATAAAATGGGGTTGTTTTTAAGGTGACAC
TTAGACTTAGATAATAAATGGATGGAATACATTCCACAATGATATTGACAATAGGGAATT
TGATAATAAATGGATGGAATACATTTCATGGAAGAGCGTCTGCAGGCCTAAGGACCTTAG
GGGGCCTAGGGGTGCTTCACCTTGATAAATTATGTCGGGCTCTTCAGTTGCGGTGGTTCT
GGTTTGAATGGACAGTGCCAACGAGGCTTTGGATGGGTCTGGGTAACCCTTGTGATCATA
AGGACACGTATTTTTTCTATGCGTATACAACCATCACCGTTGGCAATGGTGCTAGGACAC
CTTTTTGGGACTTCTATGGCTAAATGGGTGTAAGTATAAGGACATTGCCCCTCTAATCTT
CGACGTTTCATCACGCAAAAACTGGAAGGTGAGGGAGGCCCTGCGCAATAGCGCTTGGAT
TAGCAAGATCAGCATGGCCAGCACGTTCACGCTAGACCACGTGAGGCATTTTTTGACGCT
GTGGAATTCCCTCCACGGAATCCAACGTGATGAGCAAATCAAAGATTCCATTATTTGGAA
GCATACCGTCTCAGGACAATACAACGCCTCATCCACGTATAATGCACAATTTCTATCCGT
CATACGTACTCACATGGGCAAGATGGTGTGGAAGGCGTGGGCTCCATCGAATGTAAAATT
CCTCGCTTGGTTGGCAATTCAAAACCGGATATGGACGGTCGATCGTTTGGCCAAGAAGGC
ATGGCTAAATTGTGGGCCTTGCCCATTGTGTGAGCGAGAAGAAACCGTCGAAGACATCTT
CTTCAAATGTCATTACTCTCTGCGGCTGTGGGGGTTGGTAAAAGATTGGCTCCAGCTAGT
TAGCCTGATGCCAATGCTTGGGTAACGCATGAGCATTAAATATTGGTGGTATGACATGGT
TGACACCCCGGCAACCTACATGCATGCAATGCCTTTCGCTAACCTTGCTTGTCTGGAAGA
CGATTTGGGATGAAAAGAATGCAAGAGCATTCCGGACCATCTTTGTGCCCCCCTTCATCC
TACTTCGTACCATTCAATCTGTGACGCGGCTATGGCCCAATGCGGATGCCAAACACTTAG
GTAGCATTCTTTTGGGAGATTAGAGATCGTTTGTTTGTTTTGCACCCCTTGTTGGGTACA
ATTCCTTTTCGCTTGTACTCTAAAAACCGCATCGAACTTCTTCCTTGCTTAATTAATGAA
AATGGACAAATCTTTTGCTCTGTGTTTAAAAAAACAATAGCGAATTTCCTACAAATTAAA
ATCCATTTGCTATTCCTCAGCCGATTGAGAAATGGATGTTATAGTGCCGGCCTATACATG
GAAATTCATTCTATTTTTTATTGTTTAGCTCTCAGTCGTTGTTATTTTTTCTATTGTTTT
TCGTAATGCTTGAGATACTTCCTTCGTTTTAAAATAAATGTTGTGATTTTATTTCAATCA
CGACACTTATTTCGAAATAAAGGGAGTAGTTATTTATCAATTGATTTAGCTTCAAACGCT
CCCAATTAAAATCATGTAAAACTGGCATGTGAATTCTATAGCCAAAAAATAACCCAACAT
ATGAAATGCTTCGGTGTTGGACCAGATCATCTCATTATCGTTTGCTTGACCACTGCGCAA
AAGTTATTTCATACTTTCAATCATATGAAAATGTCAGCATCTGATGGAAACAGGGCCACA
TTGAGCAGTACTAAGAGCATCTTCAACAGTTTTTTTATATTTGCACTCATTTATTATTTT
ATAAATTTTGGTCAAAAATTTTATATATATGTACGTATGCTAGTATGTAATGTGTCTATG
ACAAACTGTTCCCANNNNNNATTGTGTGTTTTGTGCAAATATAGCAGTTTAACATATAAA
GGCTACCAAAGCAAAAAAAAATATTGGCTTTATAAACCTTTTATCTCCGCTTGCTATAAT
AATTTTTTCGTAATTCAATATACAAAGACTATTGGAGATGCTCTAATGCTTTTTTAAGAA
ACTGATGGCAATACTGCAGTTCTATTTTCGTTAGAATAAAACCATATAAAAAAGTTGCAA
ACTCAAAAAGTTCAAACTTGCAAACTCTAGTATTCTGCAACTAAACTGGGCACGATAAAA
ACACGCAGGTGAACAAATCACATGAGAACTTTTATGTTGAGCTAGCCAACTAGCACGGCA
CATCAACTACAGCCTAGCAAAGCCAAATTTTGTGTTTTGACCTTTTCTTAAACTTTAGCA
AGATCTGATTCAGTTTGAATTTTTTTCAAGATATAACCCTTTTTCTATCGTCACAGTCTT
TGATGATAGGGTAATACTGCCTACCGTCATGATCTATGACTTGTAGGCTTTTCCTTTTCT
TTTTTACTGTCTTTTCGAGTGTAATACTCCTACTACTACTTGCTTCCTATCAGCCAGCTT
CCTACTAGTAGTTGTAGGTTTTTCCTTTTCTTTTTTACTGTCTCGCAAGAACAAGACATT
CATACTATCATTAGTGCAGGAAATCCTAGCTATGGCGTGGTAAAAAGGGGTCTGCTCGCG
TGGACAAGCCATCGATATGACGCCATAGTTAAAAATTAGTGGTGGCGTTGGAGACGACCC
TAAGAGTATTTTGAATATCTGCTCGCGTTAGATAGAGTTACACGCCGATATTGTCATATT
TAGCTAATAAAAAAATATCAACTTCACAAAAGATACTAAGCATTTCATTCACAAAAGATA
CCAAACATTTCATTCACAAAAGGTACCAAATTCACAAAAGGAAAGTACCAATTACTTGTC
ACAATGTATCTACGATCTTCCCCTCTTGATCGACACTACCTAGCTAGTTTTTCCTAAGGA
CTTTCTTAAGATCACGAAGCTTATTCCTATTTGTCTCCCCCTCCATTATGTAATGCGCCT
TCTGTGTCTTTAGTTGAGTCCTCTAGACCTTTAGGACTTGTATATCCTTATTAATCTCAG
TTATCTCGAGGTTCTTTAGGACTTGTATATCCTTATTAATCTCAGTTATCTAGAGGTTCA
GCGCCGTGATCTGACCTTGATACTGAAAATCTTATCACTCACAATAACATTGTCATCGAT
AATTTTGTCCTTCTCCTTCATCAAAGAGTCATTCAACTCCTCCAGGTCTTTGAGATAACT
CTCACGTGACGCGATCAGCTCGTGACTGAACACGTCCACGTCACCAGAAGACTGCACATC
CACAGCTGGCGAAGACGTATCTCCTACGTATGCCTGTCAAGGGTTTGATCAAATCATGAA
CAATTAATTAGTGGTTATATATATATATATATATAATGAGTCTATTCTAATAACGCACTT
AAGAGTCTTATTCTCAAAACACCACCTTCTACCACACAACGGCCCGAAAAACTACATTAG
CCCCGAAAAAACACCACCTTCTACCCCCGCAGCAACCCCACATCTCTGCCCACCTTCTTC
CCCGCACCTACCCTGCACCACCAAAATCGCCCCACCACCCTCCCTTGCTCCAGACCTGCC
CCAACCCCACCGCCTCCAACCACCTTCCCCTAGCCCCACCGCCTCCCACCACGTGCCCCC
AACGCCAAACCGCCTCCCACCTCCTCCTGGACTTGGCCCCGACCAACGCGACGCCACACC
CCACCATCACCTGCCTCATCGCCAAAGGCAAGTACCACCTCCGCTCTGCCCCACCGCATC
GATTCACCTTGCGCGCCTCTAAGCTTGGCGACCAGATCCGACGCTCGTCGTCGATACATG
GCGTCCTCGGCCGCCTCAGCATCAAACATTGTCGCGTTGCCAAGCCCCAACCGCGAGATC
CCCGACGACGACGGCCGGTCCATGATGACGTGCTACGAGGTGGATCTCGATCGGGCGGCA
GCCGTCATGCTCGTACCCTCAACTTCAACCAGATCCATCTACCCCCGTGCTGAATCTGAG
CATCTTCACCAGCGTTAGCATCTGGGAGAAGGCGATCCCAAGCCACGTCGTCGCGCGGGT
GGCCCGCAACGAGTGGTCGGTGACGCCTCCATCTAGATCCCCCGCCGACGCCCTTCCCTC
TCACTACTCGACCATGAAGTACTGTCGTCGAGTCTGTGCAGCTCGACCGAGCGACATGAA
CCTCGGTTGCGCGGGGTTGCGGCTCGATAGCTCATTCATGCAGTTGGCTGATGCGTTTGA
CTCATGCCTATCTGTGATGAAGTTGATTGCCTTACCCCGTGGGATGAACTTGTAATAATG
TGTGTTTTTCAATATTTTGCATTATTCGAGCAGTGCACATGTGCCCACCCCTATAGTGTG
GTAGTCTCACTCATGCAGTGGAGAACATGTGTAGTTTGGTTGCATAACATGCGCTCGACG
TGTAAAGTCATGAAGATGTGGATGTCTAGTACGCCGGAGGGCTATAGAAGAATTTTTTTT
GAAGTTTACTTTTTATTTAATGTATGAGAAAAAAATAAAAATTTATAATATAGATGTAGT
CCGCTGACGCACTACTTGCAGTTCACGCGGCTCATTTGTGAAGTTCACTAGTGTAGTCCC
GCGCGTTTTAAAAAGTTAGAAAAACGACAAAAATGTCATGAAGTTTGCTTCGATTTGTGT
TGAGGTTTACTTCGCCCCCATGTGGAAGTGCACTAGTTTCATGAAAAACAGAACAAAGAG
AAAAGAAATCTTGCAGAGCGCTTTCCCGTGGGATGCAGTACATCAATTTGGGTGTCGCGA
AAAAGAGAGTATCCACATTCCGGTAATTTCGAAACTGCTCCTAAACCGTAAGGATTTAGA
GAGGCTGTTCTACATCAAAAAGTTGTGTCTCGTTGATACCTTTCCAATGCTATATCAATT
GCTTCGTTCCGACGAGCGGTTTGGGAAAATTTACGAAATACGCTCGCTGCCACTCGTAGA
CATCGGCACCGTTTTCAAAATTAATTTAAACCCGCGAGGAATCTCAACGAATGGCCAACA
TATGAAAGGTGCGCCTATTACACATATTTTCAACACCGTATCATACGTCTCGTTCCAATG
AACGGTTTAAAAACTGCAGCGAAAACAGTCCAAAAAATGAAAAAATTCAAAAAACAGAAT
TCTGTTTTTAGTAAATTTGAAATTACTCTCATACGTAAGGAATTAGAGAGAGTAATGTAC
ATGAAAAAGATACGTATCGATGATATCTTTCCAATGCCATATCGTTTGCTTATTTCCGAC
AACAGGTTTAGAAAAAATCGCGAAAATACGTTCGCTGCAGCCCGTCATGTTCGAAACTGC
TCTCAAACCGCGAAAATCGCGACAACATTTTCGAAACTGCTCTCAAACCGCGAGGTATAT
CGAAAAATGTTCAACATGACGGAGTTGGGGATTTTCCGTAGCAATCGAATGGTATATTAT
ATGCCTCATTCCGACGAATAGTTTAAAAATTGGTGACAAAATAGTGTCGAAAAAGCGCTT
GCAGTTTTTTGTGGTGACATTGTACTCCTCGTTTTAAAAGGGATGCGGTGCACTATCATT
AAACGTGTAGGTGGAAAGTGTTAGCAGAATAATTATTCTGTTAATATTAGAATAATAAAT
GGTATATATATATATATGTATATGTATATGTATGTATATATAGTAATACTATTCATCATC
CAGGGTGCAAAATAAGTTATTCTTCATCCGAGGTAATCTTACGATTGTTTTATAAATAAA
TTACATTTCGAATACAAATAGTTACATTAAAATTGATCCACTATGTAAAATTTGGCATAA
GAAAACAAAAATATATGTCATAAAATTAGAAAAATTGCATTTTATGTATAGTTTTCACTA
TGTTTTTACATTCGTAATTTTACGTAGCAAAAATATTTTTTACGGTGATTATAAATTTTC
TTACGATATCTTTTTATGTGTAAAATAAGATAAGATTTGCGAAACGTAAAATTATGGTGC
ATTGATGTTGAAATAGAGGGGGTGAAGAATAACTATTTCTCACCCATGGTGACGAATAGC
GCGACCCTATAT
