Map Locations of contig_43186 (6099 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43186

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58997 1 1194 bp AK358265 Available Available None





CDS Structure of MLOC_58997






Contig Sequence (6099 bp)

>contig_43186 6099 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGAATACATATGTACTAGCTTATATCAGTCAAATATACACTAT
ATACTTCAGGTCTTATCGATCGTTAGGGGTCCAGGCCCCTGCTCGTCCCCCCTGTCTCCA
CCCCTGGGAGGCACTGTCTCTAACTCCCCTCCTCACGTGCTCACTCGAGCACACTCCGCC
TCCGCTGACCCTGAGCTTCTTCAGGCTCGACATGGACACCCTTCTCCTCTCTCCAAAGCT
CCACCTCGTCTTTCCTAACTTTGGGTTACCGCTCATCACTGTGCTATATATTGCCGAGTG
TATTCGATTAGAGCTCGAGTTTTGTTGCAACCATTCCGAAAATCCAATCCACAAGGTAGC
CCCTTCATCCTGCAAAATATGATCCAATGCTTGAATAGACAATCACATGTTAATACGAAG
GTGCAGGACGAATATACAATTCCAGAGAGGTGAATTCATAACCGCAATATTGACCGCCCA
AATTCGAGTGCCATCCTCGATGACTCGTAAGATCTGTCTAAGATCACCGCCAAACACAAC
CACTGCTACTGAGAATAAACCCACTTGTTAGGCTCCCAGTGAAGGAGTTTGCAGTATGCA
ACAAATTTTACACAGCGACAAATCATAGTATTAATTCATGTTAATATCGATATTCTACAA
TAGTTGAATGCTCTACAACACAAATAAAACTTCATTTGTTTCCCTAATAGTTCCAACAAG
GATGTCAACCTTGATAGTCTTGTTTGTCACACAAGGCTATTAAAAGATAATGTGTGATAA
ATATTTTTTGGTATTTTCGAAATAAAACAAAACTAAAAATAAAGCAATGTGTAACAGTTG
TTGGAATGTGATTCTTATGTTAAAAGCTGGACCAGTGTTCGTAAGGTCAACAATTATACC
TCTCCAGAGCATAAAAGTGTGGTAAATAACATTATCATATGAAAAACTGCACAATGGAAT
ATCTCCTGATCACGTCCAATTAACGAATGTGTAAGATCATATATAGACACGATGTTCAAA
TACTATTAAATCGAGATCATCTCTACATATAATAGGAAAATAGCCCTCCATGATCAAGAC
CCTCTCTGCATCATCTAGACATTAAGTGTAAAAATGGGAAATTGCATTTTGCGACATTAC
ATACTGTTATGAATAGGGTACTATTAATCGTCTACTGAGCCTTAACCCTTAGTGGCAACA
TTTCAGTACAATATTTTTCCACCTTTTGCCATTGTAGTAGATTACTTGCAAAATTGTATA
CACAACTAATGCACATTGCTTCCACTATTTACTACGGATCAAAAACCTCGGACTGACCGA
ATGTTTGAGTTGGCTATGAGAGGTCTAGTTGGGTGGCTATTTTCTATCTGGGCAGTCCCT
TTGGACATTTGTAGAGAGTTTGAAGGATTCAGTTGTACATGCTCTTATATCGTTCATTAT
CTTGTAGGTACACGTTACTTGCATAGTCGCTGTCGTATTAACTTGGGTTTTTATTTTAAA
TTCATATTCATGTGGCGCTATCTTATCTTGCATAGTCCAACATCGGTTCCCTGCAAGTAA
TTTCATCAATTTATATATGTTTTTAATTTTTCTGGGTATCAAATAAGGTGTCGTGGGTTC
AATAAACAGAGATCGGAACATAATAAGGAGTACAAAACATGGAGGACCAGTTTCGGGAAT
CAATAAGGAAGAAAAGGGGGAGGAAATAAGGATGGAAAGAGGGATCGAAACATGTAAGGA
AGGAGGACAAAACAGGGAGGGGCAGTTTCGGAAATCAATAAGGAAGAAAAGGAGGAGGAA
ATAAGGATGGAAAGAGGGATTTCAAGCCTGTGACAAAGAAAAAAAAAGAAGGAAAGAGTG
CACAGGTAAATAAAGAAGAAAATGGACTTGAATCCAAAGAAGGAAAGACAGATTTCGGTC
TTGAAGAAAGAAAGAAATATGCCGCTGAGACCTCTACGAGAAGCCGGGCTGCATGCCTGC
CTGCTAGGCCTTACTCGAAGCTTTCTTTGAAATATGAAAATTTAACCTTTTTTTTTTGTT
CCGTTGCAACGCATGGACGTATTTACTAGTTGTTATAAAGTGACGTAATTTAGATAAGCA
ATGTTTTTATAATCAAAGCAGTCTAGTCCCCCTTCCGCCACCATAGACCCCGCCAACGAA
AAACAACATCGAAACATTCATTCAGTCGTTAACGTACCTACAAAGACATATGAAGGACCA
AACCTTGTTGAGTTGCCTCAGTAATACTTGTTTGTCGAACATGAGGTGCGCGAGGAGACT
GCCAGTTCGGCTATAATAGTGTGTGTGTTTGTCTAGACAATCGCTCAAGGCATATCGACA
AGGTGCACCTCATTCTCGGCAAGCAAACACACTATTATTGCCAGACTAAGGCGATGAATT
GCTCATAAATACTCAAACTTGGGGTTGTTAAAGAAGATGATGTCCATGATGTTACACAAA
TGAACAAAAAACATATAAGCAATGAAGACATGCAAAAATGAATACTCTCAAGCTCCTGGC
AACCACGAGACACAGGCCACCTAGCAGCGAGAGACGAGAATTCTCTCCCCTACCACCGTG
TCAAAGCGGTGGAGAGGAGAGCAGCGACTAGATAGAGGGTGACGTTTATGGTTGTGGACG
TAAGAGCAACTCTAGTTGTCCTAAAAGTTCAAAACTCATCAATTATCTCATTTTATTAAT
TTTTAGGGAATTAAACATTTCTTCTAGAAGATCCTCTAAACTTAATACCTCAAATGAATT
CAAACACAAAGTCTTGTACACAAACTCATTTGAAGCACACATTAAACTAGTTATTGCATA
ATTCAAATTTAGATACAAAATTAATATAGTGCATAGAATAATCAAACAACTCATTGATTA
CTAAGTTAACATACATCGACATCTAACTAGGTCAAGTTTTTTTTTTTAAAGGGAGCTAGG
TCAAGCATTAAGATAAAACATACAAAAAGTTACATTCTAGACAACTCTACTTGTCGTCGC
CTAAACTAATAACATCATCAGTGCAATGACTCACATAAGAAGAATTGATGTTGCTGATCC
AACGAGGTTGAGCTAAATGATTACAACAACTCGGAGTGCAAGGTAAAACTTCTTAAATTT
CCTTGTTTGGGCTTGCTTATTGACGATTTGGGCTTGCATCTAGTTGATTTGGACTTGCTT
CTCTCGTGCGTCTATCAACACATCATCTGCTCCCCTCTCTGTAATCGGTAGTAGTAGCCT
ATCATTTGTTTTACATAATACTTTTTTTGTTTCAAAATAAATGTTGTTGAGCTAGTTGTA
TTTTTTTTTCTAATCTAGTACTAAATTTACGACACTTATTTCGGAACGGAGGGAGTACTT
CACAAGACCAACGGATATGGCATATCTATGTGTGGCAAACAAATCCTCCCTGTGTGTGTA
ATCAGTGATCAACGGGATTTGTATACCAAATTGCAAACATAAAATGATTTCTGTTATATA
CTCCTACATCGCTTTCATGGCCTCCGCGAGCAAAAAAGTGTCGACTGAGATTCCTAGGTG
TGTGCAAAGTCAACAACAGGCACTTGCCTCCGCTGCTATGGGCGGACCCGATGGAGGTGC
TGATGCAGCATACGATTCACCGGAGTACACAAGGAGACAAGGACTGATGCAGCATACGAT
TCACCGGAGTACACAAGGACGAGGAACTCGTTGCCCGGCCGACGTGGATCTCCGCCACGG
CGGTGGTGAAGAACATTTTAGCGCCGTCAGCCGGCGGGGCTCCTCCCGCTTCCCAACCAA
TTGATGACTTCAAAACTTTTCCAAAAAGAAAAAGATCATTCATCTTTCTACTTTTCCCGT
TCACTCTGTCTCATCGGCGTCTGCATTCAGGTCAATCTTCGGCTTCTTCCCGCTGCTGTG
GGCGGCGGGCTTACTGGGGAGCGGCGGCACCTTCGATGCGCACCGCGGGCACCAGGGGTC
GGCCTCGGCGATGAGCACGTACGTGAAGCAGGACGGGCACGCGCACGCGCGCATGGCCGG
GTTCGCGGCGGGCGATGCCGTGCTTGAAGGCGGCGACCGGCTGCGCTTTCCCAGGGAGGA
GGACGAGGATGAGGTGGACGCCAACGAAGAGGAGGACGTGTCCGGCGAGCGGGCTGACCG
CGCGGCGGCAGCGCACTCTAGGGCGTAGCGGACCATGTCGAGGGTGCAGACCCCAGCGGA
GGTGGTGGTGACGGCGGCGGCGGGAGCGGGAGCGGTGGATGCCGTGGGAGGCAGGTTGAG
GTCCTGGTGGCCGTCTTGGGCAGCCTGGTGGCGATGAGGAGTCAAGAACGTCTTGCCGGA
CTGCAGAAAAACAAAAACAAAAAAATTCACCTTGTTAGTAATCGTTATGATGAACATGAA
GAACAAGGAACTCTTTATCTGAAATCCAGTGCAACAGAAACCAAATTTTGATCATCGTGC
TGTTAGACCGATCAAACAACATGGGTTTGCTCTGCCAACAAAGTCTAACCCAGCAAATTG
CTCCATATAATTCTCCGGAATTTCATGTCGGACAGAAACCACACGAGCCTGAATTAATTA
AGCACCAAACATGCACGCACGCGCGTGTAATAATAACGACACGAAGAAACAAACAAACCG
ACAAAAGATCTGAGGAACAGAGGAGCAGATCTAAACAACAATACGTGGGAGACTCACCAG
CAGGTCGAGCCGTCTCTCCCAGCCGGCGGGCACCTTGACCTCAAGGTCGACGACCTCGTC
CACCCCGCCGGCGTCGCCGCCGCACCCGCCGAGCAGATCCATGGTCACCACCTCCGGCGC
CTTCCCGGCGCCGGCCCTACCCCCCCTCCCCGCCTCCCCGCGGAGCATCCTGGCGATGGA
ACTCACCTCCGCCGCCATTCTCTTCTTCTACCCTTTCTCGGCGGTCCTCTTTTCTTGTGA
GTTTGTGGTTCTGCCGAGAGAGAGATGAGAGATCGGTGGGGTGTTTGGCAGTTGCGTGGT
GGGCGCCCCTATATATACCGGGAGGCCGCCGGCACGACGGACACGCGGGGCCCACGCGCC
AGGGACACGTAGGGGCAGGGAGAACCATTAAAGATTCACTATTAATTGGCATCGTTGGGA
GGCCATTATTCAATGCCAATTAACTGCTCCAAAAAAATTGAGAAATATTAAAAGTATATG
TCCTGAAATTTTGAATCACGGCAAAATGAACTTTTTTTATGATAATTTATATTGCGCGAC
AACATAATTTAACAGATTGGACATCTGTGTTAAAGGAAAATTGCCATCCTCGCGATAACA
TAGTTTGCCATAAAAAGCATTTTTTTGTCATGCTTAAAAATATATGTTCACTGATTTAAA
TTCATTATCATTTAAATTAGTACTCATTTCCTCATACGCATTACATACATGGGCTGGATT
TATACCAGAGAAGGAGAACTCTTCGGCTGCCGCTGCAATATCATGCTCGATTTAAGTGCA
TTGATTGATTATATTTATTCTGCCCCATCCATGCCTAAAAAATCCGTATTTTAGTAGAAA
CAGATACAACCACTAAATTCATTACCATATTCGGTCGTATTCGCCCATATATTTTTAGTT
CACAATTGATCATTGCCGCGTGGTATAATTCGTATGTAGTTAGTGAAAAGATTTTTTGGA
TGAAAATTAATAGAAATATTTATGTCGGATTGAATCGCAACGATTAATGTCCAATGTATT
TTGGACTACTATATATGTAGTGCAAAATAAACTTTGATATTTTGTGTGAGAGAAAAAATG
TTAAATTGTTTAACCTCAGAGACATCATCATTTCGTTAAATGGTGGAGATGATACCCCAT
GTGTTGTTGCGGGAATGGATGCATTTGTTTCAGTGATATTTGACAGTATAGAAGTTTAGT
ATTTGGGTTAGCAATAGGGGAATTGATACTAAGATATATAATAATTCGTTATTGAACTAG
AGAAATTGAAGGTCACTTGTTCGTTTCTTTATACGCATTAAATCTACTTGCAAGCCGTGT
TAAAATAGAAGACACTTGAAATCTTGAGCTGCACTTTTGTAGGGTAAGACCATCTTTGTT
TGTGCCGTAACTACAAATTCTCAGATTATAGACCATTTT