morexGenes - Barley RNA-seq Database

Contig contig_43183
Source Contig contig_43183
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43183 (6308 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_43183

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58995	8	1649 bp	MLOC_58995.5	Available	Available	LOC_Os05g45810.1, FRAME:+3, EVALUE:8e-52, 13105.m04872 protein calcineurin B, putative, expressed
CDS Structure of MLOC_58995

Contig Sequence (6308 bp)

>contig_43183 6308 assembly3_WGSMorex_rbca.fasta
CACGGAAAAAAACAGAAACTGGCACGAGGNNNNNAGTTAATAGGTTAGTCCGAAAAAGAT
ATAAAANNNNNNNNNNATGCATATAAAACATCCAAAGTTAACAAGATAATAGCTTGAAAC
CATCAAAGTTATAGATACGTTCGAAACGTATCAGCGGATCAGAGGCGCGAACATGTGACA
CATGACACGTGTGGGCTGGTAGAAGTGCACAACATGGCACATGATATTTTAGGGGAATGC
ACATGTTGGTGTTCTACGTGTGGACATATGGTAGGAGGGAATGTTTCGAAGAGGACGTCC
GATCGTTAGATATTTTGGACGAATCCCGGTCCAAAAGCTTGAAAATCATTTCGGCCAAAA
CCCCAAAGTAAGTGTCGGTGCAAGTACAATTTAGGCTATAATCCCGTTTACCTCGCAATT
TTGTTTATGTGGAGGAAAGATACTCATAAAAGTAAGGAGAATGGGCCCTGATGCAATAGC
CTAGCTATATGCGTGTTTCCAGACAAATACAACAAATGTGAAGAGAAAGATAGGGAGAAG
ATGAGAGAAAAAGTTCTATATCTTACAACCAACCTTATAGATAACCTTGTTGTATGAGAA
AGACTGGGAGTATTTTTTTCTCAGAAATGGTACTATTATTTATGCCAAACTCGGTTTATT
TATCGTTTCAAAATACAAAATTAGACTTTTTTTGAGAAACCAGCTGGAGCTCCGTTTTTG
CATTAAGAAGAAGAGAATTGATCGATTTATAAGAAAAACTAGTCGAAAACTAATACAACG
AAACACACAGCAGCCCCGAGGGTGCGCACCCAACAGGCCGACTACCGTGTCGCTCAAACG
GCCAGAGTTGCCTCCCTACCACAAGACTCGAAGCCACCACTCCGGCATACAAACCTCAGC
AACACACACACGTCGGTCCCGAGGTCGCACTCCACACGAGACGACAACTCTGCCACCCAC
ACGGCAGATCTGACACTCCACAACACTGGGTGTTCCTCGGAGCCAGCGCTCCAACTTACC
CACTGGCCGCGAGGTCGCGCTCCATCCGAGCCGACGACTCTATCACCCATGCGACCAGAA
CCGACACTCCACGACACTAATCTTTGAAGCCGCTGCTCCGATTTCCTCATCGACCCCAAG
GTCGCACACACTCCTGGCCGACGACGGAACCGCAAAAGCCAACTGAGCTGCCAGGAACTG
ACGAAGGACCAGACCTCCAAGGCGTCGCCCTAAGAGGAAAGCGATGGGAACACCGCCGAT
GCCCGCTTCGACCAAGGTCAAAACTTTGGTTTTCACACGAAAAGCCCGAGACCGAGGCGA
CAATGGTGGTGAAGGGGCTCCACTAGGGGTGGATTAACGAGCTACTCGGCTCGTTAAGCT
CGTGCTCGTTAAGCTCATGCTCGTTAAGGCTCGACTCATTAAGCTCATTAGGATTAGCGA
GCAAAAAACTCTGCTCGGCTCGGCTCGTTTGAAACTCGTTTTGCTCGTGAGCATTCGTGA
GCGCTCGTTAACAGATTTTGATGTCTTACGGTCTATATGATAAGTGTGTAGATGTGGTTT
TCAAAAAAAAAAGATGGGGCCAACAAACAAAATTCACTAGTTTGTTACTTCCTATATAGA
TTAGATTAAATAGATGGGATTAGGTGCTACGTAAATTTTGTCATGTAAGATGAAAATATG
TTGTATTATCACTAATGAGCTTAACAAGCTACTCGTGAAACTCGTTAGCTCGTTAAGCTT
AACGAGCTGAAATTGATGATTGGCTCTATTCATTAAGAAGCGAGCCACGAGCTTAACGAG
CCGAACTATCGAGCGCTCATTAAGCTCGTGAGCTACGACTTTTGATCCAGCCCTAGGCTC
CACAATGCCGCCTCCAAGAAGAGAACGACATCCTAGGACGCTGACAATACCAACAACGAC
CAATGTCGAGCAAGGCTTTCGCCCGGAGCTCACCAAATCCATCCTCACCACTACCAACCC
AACAAACCGTCTCTGGACTTGTCAACCGTCCTCGCCCAAGCCACATGACCGAGAACACCA
GACAGCTCGCCGCTGCCAACACCCATCGGATTCACAAACCACCATAGCCCACCGCGCACA
ATAACAGCCCCACCCACGCAGCTTCGGGCAAGGAAGGCCCATCTCCGCCATCGCAGACCA
CCGGCGCTGTCATGCCGTCACCCGCGCAGCCACCACAACAGCGCCACCGACGGGAGCCCC
ATCCCGCCTCCCGCGAGGCCTAGGGCAGCAGACCCCGCACGACTGCACGACGAGCCCACC
AATGCGACGTCGCCGCGCCGCTATCCATAGTTGCGCCTCGCCGCCACCCGCGCAGCTCCC
CCGACTGAGGGAGGGGACCCCAGGCACCCAGCATGCCCCACAACCGCGACTCACCGGAGC
GTCGCCACGACAGCATGTCGGAGCGCCTCAACCGCCAGATCTTGACGCCGAGTGCCACAT
CGGTGACCGCCTGCCTTAGCACCGCCCCGCATACCATCCAGTTGAGGAAGGGGATGGGCT
GTGTCACCTCAATGTCCGAGGCCGTCGCCTCGACTTGTTCACGCCAACGAGGCGCAGCCG
CCGCTAGATGCAGGCTATCGACCGGGGCCGAAGCCAAGCGACACGCGACAAGGGCCCTCC
ACCTAACGGGCTCCCCGTCGGCATGCCCTACGATGAGGGGAGGAGTGGCGGAGAAAAATG
GTACTTTTTTGTCTGGGTCGGGTTTTGCAAAGTCCAGCCGAAAGCCCTAACGTGGGTTTA
CTGAGCTGTCCCTGCACGTCACACAAAATTTCTGGGAAATCTATGACATGTACACAGAGA
TTATTTTTTAGACATGACGGGTAAGACGACACGTTATATCGGGAACGTTCTTATTCTTGT
ACTACTGCCATCTACGGTGTATTGTGCATTCATAGAGTATTCTAGTTTGTGACATATACT
AGGAGTACAACACATAAGGGTACCCGGTCAGCTGCCTTGTTTTGTCCTTTGTCTAGGATG
GACACCTGACCCAAAACAAGTCCGCCCGTGCGAGTCCCGACCACGCCCGACCACTCGCCG
CCACGCCACCGACGCCAGCCGCCCCGCCGGGTGTCACCTGCCTCGCCGGGATCGGCGAGC
GCGCGCCCGCACGTGGCTCGCCCCGGCACCGGGATGGTGGTGGTGACCGTGCCTAGGAAA
AAAGAGCATTCTGGAAAGAGAAAAACAGTTTTTTTCCCCATCTTCTTCTGAGCCGAGAAA
GAGAAAAGCCGTTGAAAGCAGCGGGAATCAAGGGGGATCCAATCTCGGGCCCCCGTGCAA
TCAGGACGCCGCTTTCGGCTGACGGTGGGACGCCGCTTTAGAACAGAGGCCACCGGACGT
CGACGGAAAGGCGAGCACGGGCGGAGCCCCACGGCGGCGGCCGGCGACGCGCGACGTGGC
CGAGCGAGACGCCTTGGCGTCCCGTCTTCCCGTGAACGAAACGAACCAACCAACCGCCCC
AAACCCCTTTTCGCACCACCCATTTTCATTTATTTACCACAACTGCAGCTCTCTCTGTCT
CTCTGTCTCTCTCTCTCTCTGTGGTTATAGATTCGGCGCACCTGTCGCCGTCCGGAAGCC
CCGCAGCGCACCCGCCCCGATCGCCCGGCGAGAGCTCAACGGGAAGAAGCCATTTGACTT
GCCGCCCAATACTATATTGCTACGCCCCGATCGAGCGGAGTCCAGCCGGGGGGGCACGCA
GACGTCGAGGCGGAAAGAGAGGACCAAAGGGAGAGCCGTGTCGCCGACGACGACCGACGG
ACAGACGGAGCAGCCGGCCCAAAGATCCTCTTATTCCCCCTTCCTTGCCGGTTCCGGCCA
AAGCACCACCGCAGACGGCGGGGTTTGGTACTCCCTACTCGTTCGTCTTCGCCTCAGGTC
AGTCGGATTGCTTGCTGTTTCCGGTTTCGTGGTGCTGCGTTTGCGTGTCGCGTCGGAGCC
TGATGGATGGGTGGTTGTGTTTCTGTTAGCGTCAACGCCTGTAGAGTGCGGAGCTTATTC
TCTCGCCGGCGCGGCGTGCTCGATCGGCTTAGCTTCCGCCGGAGCCGGACAAGCAGGCAG
CGGATGGGCTGCGTGTCGTCGTCGCCGGGGCGGTCCAGGCGCGCGCCGGGGTACGAGGAC
CCGGCCGTCCTCGCCTCCCAGACCTCCTGTACGTCTCGTCAATCCATACCACTCCTTGAT
TTCCTCTCTGCTACCTCAACTGAATGGAAGCTCGTGTTGCATTGCGTGCGCGTGGTTGCA
GTCACGGTGAACGAGGTCGAGGCGCTCTACGAGCTCTACAAGAAGCTCAGCTACTCCATC
TTCAAAGACGGCCTCATCCACAAGGTAGCCTCCACGACCGCCATGGATCCATGCATCTTC
AAAGACTGCGCCCCTCAACTCATCTCATCTCATCTGTGTGGTTGGTTCGTCCCCAGGAGG
AGTTCCAGCTCGCTTTGTTCAGGACCAGCAAAGGGCCGAGCCTGTTCGCCGACAGGGTGT
TCGACCTCTTCGATCTCAAGCGGAACGGCGTCATCGAGTTCGGCGAGTTTGTGCGCTCGC
TCAGCATCTTCCACCCCAAAGCTCCTGAATCGGACAAGGCCGCGTGTATGCCTCCATGCC
TCTCGTATAATCGTCTTTTTCCTGTCCATTCGTCGTCTTTGCTCAGCAAAAATCACCATC
TCTGGTTTGTCACTATGCTTAATTCTATATATAGTTGCTGTCCTTATTCGTCACCATCCC
ACTTTGTAGTTGCATTCAAGTTGTACGATTTGAGGGGGACAGGCTACATCGAGAAAGAAG
AGGTACTACTACTGAATAAGTTTGCACCTTATATATTTGCACTGTCCATGAGCTATGCCG
ATGAACTTCGGTTAACTGATTGCATCACTTGTTGTTGACACGCACAGCTTCGGGAGTTGG
TGGTGGCACTCCTCGACGAGTCCGACCTGTGCCTCTCCGATAGCGCCGTTGAGGAGATCG
TCGACAATGTATGTGACCAACAAGATAGATAGATAATTGTCTCCTACTCCCTCCTTTCCT
AAATATAAGTCTTTTAAAAGATTTCATTAAATGTCTACCTACGGAGCAAAAAGAATGAAT
CTATACTTTTAAATATGTCTATATACATCCGTATGTAGTCTATTAGTGAAACCTCTAGAA
ANNNNNNNNTTTAGGAACGGAGGAAGTAGTATTTATTCAGTCTCTCTCCTTTGCTGCTCT
GCTAACATGTCCTGTGTGCTCTGCTCCTTTTGGAATTTCAGACGTTCAGTCAAGCAGACT
CGAATGGCGATGACAGGATAGACCCCAAGGAGTGGGAGGAGTTCGTCAAGAAGAACCCAG
CATCGCTCAGGAACATGTCACTGCCCTATCTTCAGTGAGTACTTATCTGCCGCTGCACTC
TGCTTCTCAGGCTTTCCTAGTTCTTTACGCTTCTCCTTTTTGGGTGGATAGTCTATAACT
CTATATAACACACTTGGAGCTCTTCTTCTGATACACAAACGCCATATGTGAACTAGAGAG
CAGTAGAGATCTTCATTTGCTTTTGCCCTTTACCACATTTGTAAGTGATCTGACTGCTGC
TGTGGGTGATGTTGTTTGCTCAGGGACATTACGACGGCGTTTCCGAGCTTCGTGATGCAT
TCGGAAGTCGACGATTACAGCGGAATCAGCAAATAATAACTTGCCTTGATGCCTTATGAT
CTGTCCCGGGAGGCCATGCGTTCAGAAGTGCGTGAGCTGCACCTCGAAAATCCGGAGCTC
GAACGGGGGGAGAAAACACGGGAATCAATCTGGGAGCAGCTGGTGAGCTTGAGACGATGA
CCAGATAGACAACGACTTCTTGTTGATGCGAGATGGGCGTCAGACTATGAGAAAGGGGCT
GTGTACGGTGTACCTACGTCAAGTGTGCATAGAGGTTGTCGAAACACGGAGCAGTGACGA
GCGGTTTTGGTCATTTTGGCTGTTGGGCACTGTTACTAGCTTCGTATCTTTTGGCTTATG
AGGGGCAACCTCCTGTAGGTATGGTAAAATGCCAGAGGATGTATGTTGTTTCTTTAGTTG
CTTCGATGCATCGGTGATGCATCAAGAGATTGTAATAGAGCACAATATGATGTATTCTCT
TCCTTCCTAAATAAAAGTCTTTTTAAAGGTTTCACTAAAAGACTATATACGGATGTAGGC
AAAATTGATTAAAATGATCCCTGTGGGGAAAGAACTCACGGAGTGACCCCTCAGGGAAAA
TATGTCACCCGGCTGACCCTTTTGTGTGGCGCCCGACACCTCGGCGCCCCACTACACTGT
GTGACGCC