Map Locations of contig_43176 (9794 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_43176

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58977 1 1474 bp MLOC_58977.1 Available Available LOC_Os01g43250.1, FRAME:-2, EVALUE:0.0, 13101.m04466 protein WD domain, G-beta repeat domain containing protein, expressed





CDS Structure of MLOC_58977






Contig Sequence (9794 bp)

>contig_43176 9794 assembly3_WGSMorex_rbca.fasta
TCCTATATAAGACATCATCGTCAATGGAAAGGAGACAGTTGAATCATTTGTTGTCTCTCT
TATTTGTTTCTCGATTCCATTTAACATGGAGGACGAGCGTCATGAGGCTCGGAATCTCAG
CCATCTGCTCGCTCTTTAGGATATGTGTATCGTGCATTTTCAGTTTTATACCGGCGCTAG
TTAGTATGAAATACAGAGATGCCGTGGGATAGTGTCTTAGCTTTCTACATGGGCCGCCGG
TGTATTGTATGACTGTGGGCCGCATTTAAGATGGTAGGAACGGCTCGCTTACATTTTGAT
GCTCTTTGCCGCGCTGTACATCTGCTTGGCTGGCACACTAATTGTCTAGTCAACACCTAT
ATGATGGTAAAACAAATACAGCACACCATTAGTTGTTTCTTTTTTTTAGTTGGCGATGTT
TCTATTTCTGTAGCAGACTACACTGTATGTGTGGACGATTCAAAAGAAAAAATGTGCATG
AAAAAACTTCTTTCCTGCATATATTTTTTGAAAGACAAATAATTAGTCTTATATATAAAG
AAGTGAAAAAAGGTCATGTATAGCAAGAATAAAAATATTCACATTTTATAGAAAATCATG
CAATTTTGAAAATTTGGTCACATATTACTAAAATACACAAAGAACACTTTTAAAAATACA
ATCTAAACAATTTCTAGATACATGGCTTACATTTTTTAAATGTGCGGTTGAGTTTTTAAA
AAGAATACAATGAACATTTTTTGTAAATATATGTTGAACCTTTTGTAAATGTACGCAACG
CAAAATTATAAAATGCATGACTAATATTATTATTTTTCACTATACATACATTTTATACGT
ACGGTTCATGGTACTAGTCTCATGATGGTTCCTCGAATCAGCCATTTGATTTTTGTTCAC
TCTCGTGCATATTTGGGAAAATGAATTTTACATGTATGTTTCTAGTTTGAATATGACTAC
TTATCATATAGTATAGTCATGTGACAAATACTATCTGAAATTTACTTTTCTTTTTGTAAT
TTACTAGTTATTTAGAGGACGATGATTTTAGCTGAGCGCCACCGGCGGCACCAAATCTCG
AAATGCACTGAGATACTTTCGTCTGATACAAATGGAGCAACCGGTCAACATGGAATTTGC
AATTTTACACATGGGCGCCCGCTGAATAGTGAATTGCAAACAATATTTGTTAGTTTTACA
CGTGTATAAAAAACAAAGATATAAATTGCTCGCTCATGAAAAAATTATATTTTGGGTGCT
ATGCTGATTATTTTCCTATTTTCTACGCAGATCATCCTGATCATATCAAAAAGTCCAAAA
AGTTTTCTTAGTCAACTATCCAAACAAATTCTAAAGGAAAATTTCCAAAAAAAAAAAAAT
CAAAGGAAAGTGCAGTTAATGCACGTACCATGTTGATGAATCAACTCACATAAGTGATTA
TGCACCATCCACTAAAAAACAAATAAATATGCACCATGAGGCATGAGCTCGTCACGCTAG
GTTCAATGTGTGGGTGAGATGTAGAGCTTTTTCTATGTGTGGTGTGCTTGCACACCAAAG
CCCATCGCCGCACTGGTTGGCACGTGATGCATATGCTGTGCATGTACAACGAGGACGCTG
GATGAGCTTCCGTGTAGACTTGCAGAGGTGCACTGCACTTTGTACTGTTGCGGAATACGG
CATAAAATAAATAACTGACAAGCTGAATACATGTAATAAATATGATTATGACCTGATCAC
GAAGCATGTTGGCGGCCCAGATACCGAGCTCCATGCAGCTCGCCATCAGGCATTTTCGTC
TATATACTACCTATATACCACATCTGAGTCTCAAAAAAGTTAAAACATGTTATACTCAAA
ACTATTTATGAACAGAGGGAGTAGTACTTGTTTATATTCAAAACTGATTGATGACATTTA
TTATCTAACAGAAATGTAAAATTGATCTTACTCATAGCTCATTGTCCATATCCCAATTTC
TTGGGTTATATTTCATGTGTGGTGTATACGACAACGGACACTATTTCAAGGAAACTGTGA
ACTGATTTGTTGACAGTTGAATAAAATAAAGTTAGTCAGCAGGCTAAATTGTTTACAAGA
GAACAAACACATCATCAACTGTGAACCATTTTTTTTTTCAGTCACATGGCCATAAAGAAC
AGCTACATCATCAACAAGATAAGGATAACAGGTACATCATGCATTCATGGTTGAGGAACC
TAGTTTTGTTCGGGCAAAGCCAACCATGCAGAAAGAAACCTTGCAGAATTGTGATCAGAT
AGCAACAACAATTTGGGATCCTATCTTCATGTTGAAGAGCTATTAAGGCATTTAAGTTGG
CTTTGTGCTGACAATTTGGGATCCTATTTGTTGCGAACAGCCCTTACTGGTGTGACCCAT
TGCAGTCAAGCACGGCCTGCTCATGCCAAACTCCATTTAAGTTGGCTTGCCATAGCTTAA
CCATGCCATCCACTCCGGTTGATGCAAGCGTCATACCGCCCATATCCCATTCCAACTGCC
ATACCTAGTCGGATGTGAAATGCAAGTGAGCTGAAAATACTACCATGTTCTTGTAAAGGA
CACGTAAACACAAGAAGCACAATTTCAGGCAACATGTTTCTCGTTCATACCTCCCCATTG
TGGCCGGGAAGTACAGCAACATTCTCTGTTGACAGTCTGCCGTCAGATTCAAGGTTGAAG
CCTACACGCCACACTGCAATGCCTTTGCAGGTTGCAACTGCTATCATCTCATATGGTCTG
AAAATTGTTGCAAGAGCATGACAATGTGGTAAAACAACAGATTGTCAGGACAAACACAAA
CAATCAATAATGAAATAATGCATCTAGATATGAGCATAGCAAAAATATGATTATCTACCC
AATTGACATGCTCTTTCCAAGCCCATCCCAACACAAAGCCATCTCAATTACCCTTAGGTT
CAACTTCACTATCAAGGCATGCAAGTTCAAGTCGAGCATTATGTCAAGACATATACTTGA
AGCTTGTCCTCCATCAAGCAATGATGTACATGTTAGTGAAGAAGCTATTGGGAGAAATCT
TCCCATACTGGTTTCAGGGAGAGCAAATTGAAATATTTCATCGAGCAAAGATTAAAGAAG
GTTTCCGACTTGGAGCAAGGATTGTAAAGAGGCCAAAGGAGTTATGAGTGGTAGCGGGAT
GGGCTTGTCGTGTTCGCTCAAGATGGGGCTAACCTGCCAATGTTAGGAGCCCATGCTACA
GCATGTACTCTCTCCCCCTTATCCTCCGGTGAACCAAGTTCAATAACTGGAAGCCAGCGC
TGGTGAGCTTCTTCAAACTCCCAAATCTGTTTACCATTTCAAATTAGAATATTACCATAG
ACAAAATATCAGTTCATGAACTAGGAAATACGATAAGTCGGTTGCTCATCACTGCAAAGC
CAAAGCAACATCATATGCATTTGCATTCAATTACTCTTTGTAGACTTCATCACTTCAATT
CACAGTCATCACCCTAATAACAGCTCTTATTTTATTTTTCTCCAAAAGCAAGATAATATA
AGAATACTAAGATTATTGCTGGGATGAAGTTGCAGAAGTTTTATAATTTCCATGACGAGC
GTACAAGAAACAATGAAAACAGTACACGAACCTTGCAAGAGTTAAAGTTTGGAGAATCTG
AACTGAAACCAATAGCAAAACTAGCCTGCTGGCCTTCACCTCTTCTAGGACTCCATGCAA
TTGATGCAGAAATGCATGCTGGCTTCCCAATTCTGGAAACAGGATCAGTAATATTCTGTA
GCTCTGCCTGAAGTTATTGTTAGGAATCAGAATTGTTCTAGTTTTTCAAAACAGGTAAAT
GGCGACAACGCTTTGAATGACGAAATAATGGGTTTGCTAATTTAGATTAACAAGAGATTC
ATCTGCAGTAGAAAGGAACTAAAATGCAATTGTTGAGAACGTTGACAAATGAGAGCAAAA
TTTAGATGAACCTGAAGCTGCCACTTGTCCAATTCCAATGAATCCAAAAGTTCATAGACT
TTCACCTGACCATCTGAGTATGCAACAACCTAAACAGACCAGCAAGAGTTACTAATAAAT
AGTGACGCAGATGCAACGAAGAATCCATAACAGTGAGAAAGCTTTGGAAAATAAAAACAG
AACTTGTAGCATAGTCAAACGAAACAATGAAACAACACAACACTTCAGCACAGGCTAGTT
TACAACTTGTTGCATGTGAGAAGTGAAATGAAACTGCTGGTTTACGAGTCAGGGGTAACT
CACCATTTTCAGACTTGACAGCAGCAAACCAAACTGTACATTTAGGATGTGGGAACTGCC
ACCCTCAAAGAATTTACATTTTCTCCAGATTGGAAGTTGATCATCTGTTAGTGGAAAATT
CTTAGTGAGAGCCTTGCCTACCAGGTTCCATTAGTGAAGAATAGAAAGGGAATGAAATAC
AGCAATGACAAGCGTACTACGTATATTTCCGTAATTATATAAAATGAAGCAGAATGCAGC
TTTGATGTATAAGAAGTCCAGAGCTGACGGAAACAATGAAGCTTAAAGGTTGTTTGAATG
ATTACCTTCAGCAAAACTGATTTCTTTACATATAAGTGTTAGCCAAGACTAGATTAATTA
ATAAGTTATTTGGTACATACTACCAGATTTAAGATTTCTCGATTAAGTTATCTTGGAAAA
TGTATATAAGTAGATTTTTTGCAAGACCGGCTGCTTGAGGTGTAAAAGTTGATATTACTG
GTGTCGAGAGAAGCAAACAAACATAGTTTTTCGTCGTTGCAAACTCAAATTTGATAAAAT
TAGTCATATGTTTTAAATATTCAAGATCCAAGTAGCTCCTTAAATCACATAAAGGCCAGT
TTGGGATTACATGATATGTTGCATTGTGCTGCAAAGTCTAGTGAAATATTCCTATTCCAG
TTTTAAAAATGAGTTTGATGTATCAATTTTTTTTTACTTGGATCTACTCAATAGTCAGTA
CTGAACATGACAGAGTGGTAAACTAACTGAAGTGCTTCAGATGTACTGGTAGTCAGTACT
GGACATGACAAGAGACAAACTGACTACATGTGCTAATTGGTAGTCAGTACTGAACGGACC
GCCCAAGTACTATTCTCCATGTATATTTCATGGGAAAATTGAGCTAGTAAAGAAGACGAA
GAGGCAACTAAATCAAGATCAATGATTATTGGTTGGTGAGTGGTCTCCAAATTCATTCTC
ATCAATGCATAAGTCCTTTCAGACTTCTCAGTACAAAAGCTAATTACAGCACAACTATCT
CCATCATGAAAGTGCAAGATTGTTAGAAACATAGAATAAGATGGAACAAGAAAAGCTGAC
CTTCTGCAATCTCCTCCCACAAAGACAGCGTACCGTCGGCACAGACACAAGCTATAGCAT
CCCCGTAGTCCGGAGGAAGCCAGACGACAGCCACTACGGCATGCTCATGGGCCTGATCGC
AAGACCGACAACATTACGAAACAAGTCTCACTTAGTACACAAGAAACACCAAAAGAAAGA
TACAATGGTTCAGAGATATATATGCTATTCCAACACCCATAGTACTCCATCTCGAGCATA
ATTTCTAGCAAGTGCCAATTTCACATCGGCACACTGATCTTTACAAATAGAACCATTCAA
CAGCATGTGCAACCAGTTTGGTGTATCAAGAATGCAGAAACACTGCAGTCTCCTACTGAA
ATATCCACACGCAAACTAATTACCGCATCCCAGAGCAATAACTTGGTACCCGTAGACCTA
CGCAACGAGCCACATGATTGACGTATTGTGCACGAAGAATCGAATGCTAGCAAAAGGCTC
TAAACTTGCAGTAAATCTTGACGAACTCATGAGAAATTGGTCAGTACTAAACCACCCGAG
TGGACGCGAAAGAACGAGACGCTGGGTGGGTGGGTGCCATATGAGGTTTTAGGGTTTCCG
TCTTTAAGGTGGTGGACTGGTGGTGGTGCGGTAGACTGACCTGCCACTTGGAGGAGGGAG
ACGGCTGAGAATCGTAGACGGAAACGGACCCATCGACGGCGCCGGCGGCTAGGCGCCGGC
CGCAGTGGTTCCAGCCGCAGCACGCAGCTCCAGGCCCCAACTGAGCCACCTTCTGATCCG
CCATTCCCGCCTCCCTTCCTCACCTGAGAATAGATGTCGTGCTCCTCGTCGTCGTCGTCG
GCGGCGGCGGCCAGAGCGTTCGCCTGCTCAGAGTTTTGCGCGGACCCGGTTGTTGTGTTC
GGGGAGGAAGCCTGGCGGCCCAGGTAGACGTAGTTGTTTGCTGGGAGCAGTGTTTTTTTT
AGGGGACTGGGAAGTCGTGGTGACACCGAAATGAAGGCCCATGAAAAGACGTTTTCAAAT
TCTAAAAACAACAATGAAAGACTTTTCCAATTCTAAAAAAATAATGAAAGACGTTTTCAA
CCTAGGACGTGGCTAGCGGGCGCTAGAGCGCGATGGGATCAAGCGCTCCTCTTAATATGG
AAGGACTTGTCAACGCATTACAAAGTCCATATAAAAGAATCTTGTCCATACGTGCATTTA
TCTGGTGGCTCAAAAGTTTAAGAAACTATAACTTTTGATTTAAGTCTCAAAATTCAGTTT
CGTTTTCACAGGTGGGTTTCTCGTAACGAATTCATTAAAACTAGATCTCATATCAATAGG
TTTCGTCAAACTTTTTTAAGGCAACTTTGGATGCGATGGAGGCAACTTTAGTGCTAAAAG
AAAGTGACTTCATTTTTTGCCTAGTAGGTCTGCGTATTAGGTTGGTTTGTTGAAAAAATC
ATGCAAAATATGAGGCGCATTTGGTGCTACATATAAGCGACTTCATTGCACTACGCGTAT
CAATGAATTTTGCTAACATTATCTCAATTTGCCTATCGTGATTGCTGAGTTGCCTACCAC
TAATGCCCAATTGCCTACAATACTATAAAAATTGGCCTACCGTTGATACCCAGTTGTGTT
TTATTGGTAATTAGTTACCTATTATTATTGCTCAGTTGTCTAATTTTACAAATTAATTGC
ATAGAATATTTTGAAGTTTCTTATCACAAGCTAACTCATGTGTACTCTCACTCTAACTTG
GTATCTAGACAAAAGCAACCACATATGGAGAAGTTCAAGTTCATCATTGATGGGGTTATT
GGAGGCAAAAACAAGGACAATGACTTTGAGATCGTTATGCACTCGAGTATCACATAGAAA
TCGTTAGCAACTTTTAGGGTGTTTTTGTACAACTCCAGTGCATTTAACAAGTAACTCGAG
TGTGTTTTCCATTACTATATCTAGAGGTTTCAATGATTTTCAAGGGGAACTTGTGCAAAA
ATTATGAACAACTTGTGTATGTTTGTGGGCAACTGTGTGATCCACCCCTATGAACTTCTC
ATCACCCACACGCAACTTCTCATCTGCCCCCACTTATGCAACTAATCAACACCCATGACC
TGGCTAGCCAACATACGTGCTTAGTAGTATTACGAGGGTACACCCTCAAAAGGAAAGCAC
AAGGAAACCACCCATGCCCACATAGCTTTGAAATTTGGAATCATGAAAGACATTTTAGAT
CCCGCAATTTGTTTTTGAGATTGTAGGCAAATTAAGTCCCTTGATGGACAACTTAGGTAT
CATCTTCCCTCACTATGCAACTGGTCCCCATGCTTTGAGCAACTCTTCACATCGTATGAG
CAACTCATTCTCATCCTATGATCAACTACAGTACTCGTCAACCTCTCGACCCCACTCCTC
TCCAACCCCGCTCATCACATGCGTGATAGTTTTAAAAACGTGAAATAACTCTAGCATTAC
TACTTTAGGCAAGTAGTGAAATGGAATGTCATAGAAAGAGTAAAAATGGCATCACAAAAA
ACACATAGGGGTATACAACTTATTCTATTTTTGCAGGCAACTTTGTGCAAAAAATATGAT
CAACTTGCATAGATTTGTGGGCAAACTATTTTATATGCCCCCTATGCAACTTATGATACC
CCCCCCCCTAGCAACTCAGTGTCACACATTGTGCAACTCCTACTCATCTTGTGTGTATGC
AACTATGCACATATGCATATAGCAATTATTCTTTCAAACTCTAGGCAACTGCACGCCTAG
CAGAAATCCACATAATTGTTCTAGCAAGATCCAAAGCAACTATCCCTAGCAAAAAAATCC
AAACAATTATCCTAGAAAATACAAGCAATTGTATTACCAAACCACAATGCAAAACTGTTT
CTAGAAAAACCAAGCAAGTGTATTACCAAACCACAATGCAAAACTGTCCTAGCAAAACCG
AGCAACTCTCCTACAAAACCAAGCAACTGTTCTATACAATCTAAGCAATTGTATTACCAA
AACACAATGGAAAACTGTTTCCAGCAAAACCAAGCAAATGGATTAGCAAACCACGGTGCA
AGACTGTTCTAGCAAAACCGAGTGTCGGTGCACTAAAGACCGGGGTCCCTAGTGCCCCGG
ACTTGTGCACGGGCGCGGGGAGCCCGTGTCGGCAGGGCGTGGCATGACCCTGTTAAGAAG
CAATCACTAGAGTTACCAAGGCCCCGACAAGCTTGCTTTGCCGGGAGGAAGACCAAGAAC
ACACTCATTTGATGGGCGAGACAAGCCCACCAAGCACAAGGCCTCGGCAAGCTCCCTTGC
CGGGATGATAACCGAAGAAATCCGACAAACCCTCCTTGCCGAGACAGATATTCAAGGCCC
CGGCAAGCTCCTTGTCGGGATGATGGGCCTGGCTACTGACTAGCGACCGCCCAAGCCACA
GTGCCACTGCCCCGCAAGTGCTAGCGCGTTCAACAAGCGCCAGCACAACGTTCGGGTGTC
GAAGCGTTTGGACACGTGTTCGCACCAACACCATGCGAACATGGACAAGACATGCATTAA
ATGCACCTGACAATTGTAGATGGATAAGCACCGCCCTAGGTTCACTGTAACTTCTCGTGA
ACCTACCATCGAGCATTGTAGGCGACCCCTTCACCTATAAAAGGAGGCCCTTGGCTCATT
TCACAAGGGTTAGACTCTCTGGAGATTTGGCTCCGTGGACATCATCCCTTAACGGAGATC
AACGATCATTGTAACAACCAACAACGAGACGTTAATAGAACCAGACAGGCACGACGTAGG
GTTTTACGCGTAAGNNNNNNNNNNNNNGGTAAAAAGGCTTGCCGGGTGCTGGTAGCTAGC
TCTGCTCTTGGCGCCAGCTTCCCCCCCTACGATCAGAAAGGGTTTCACGTTGATTCCCAT
AGGTATCGACCTCGCATCGTCAACATCTTCGGCGTGCCAAGTAGGGGGCGGGAAGTCTAG
TATGAGTCCGGGCAGAGCTCAGCCCCGGATTCTTCGAAGTTTGGGCGCCACGCCGTGGCT
CCTCCGGAAACGGGGCACCGCGGCAGACGCTCTGTTCTGCTATGGCTTCCCGAGGCCTAC
ACGAGCGCGTTGCTGCGCGAGCGCGAGGCGGGGAGGCGGAGGCTCCAAGGGCGGCATCGT
CGGGCCGGTGCGTCGCTCGAGGGCCAACACGCAGCCGTCGAGTGCATGTTGGAGGGCTTC
ACAGAGGCCTCGGTGCATACTCCGGCGATCGCACCTGCGCGGAGGAATGCATAGTCGTTG
AGGATGCACCCAGCGGTCCCGAAGCCCCAGCGCACACTCCAACACGAGAGTTGAGTCCCT
AAGGGTTGTTGGAAATATGCCCTANNNNNNNNNNNNNNNNGTTATTATTATATTTCCTAT
TACAAAATAATCATTTATTATCCATGCTNNNNNNNNNNNNNNNNGAAACACAAATACATG
TGTGGATGTATAGA