morexGenes - Barley RNA-seq Database

Contig contig_43108
Source Contig contig_43108
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43108 (7387 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_43108

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58915	10	6020 bp	AK358325	Available	Available	None
CDS Structure of MLOC_58915

Contig Sequence (7387 bp)

>contig_43108 7387 assembly3_WGSMorex_rbca.fasta
CCCGTATCACCCGACCCGCTGCTGCCCTCCACCGACTGGTGGGTCTTCGACACCGCCGCC
GTCCGCCCCGGCGACGTCCTCGTCATCTCTGGCCCCGACGCGCCGTCGTCGTCTTCGTCC
CGCCGCCTCCCGTCCTCCTCCGCCGTGTACTGGCTCTACTACACCGGCTCCAACGACGCG
CGCCTCGCGTCCCCGTTCCCCGCCGCGGACGTCGCCGCGCTGCCCGGCCTCGCCATCAGC
CAGGACGGCCGCCACTGGGCGCGCATCGAGGGAGGCCACCACACCGGCGCGCTGCTCGGG
GTCGGGGAGGACCACCCTCATGGCTGGGAGAAGCGCTGCGCGGCGGCTCCCAAGGTGGTG
ATGCACGCCGACGGGGACCTCCGGATGTACTACCACTCGTTCGACGAAATGTCGCAGAGG
CACGCGGTCGGGGTGGCGAGGTCCAGGGACGGCATACGGTGGGAGAGGGTGGGGAAGGCG
CTCGAGGGAGGCGGGCCTGGGTCGTTCGACGAAGGCGGGGTGCGGCAGGGGCATGTCGTC
CGCGACCGCGCCGCCGGTCGGTACATGATGGCGTACGAGGGTTTGGATGGCAATGGCGGG
GTGAGCATTGGGCTGGCCGTGTCGGAGGACGGGCTCAACGGGTGGAGGCGGTGCAGTGAA
TCACCAGCGCTGCGCCCGTCGGAGGATGATGATGAGTGGGACGTCGCTGGGGTCGGCGCC
CCGTGCTTGGTGCAAATGGATGGGCCATATGATTGGAGACTCTATTACATGGGCGTAGGG
AAGGACGGTGAGGCTGCAATCGGGATGGCATATTCAGAGGGTCAGGGTCTTCCGAGGTTC
AACAAGTGTGACGCTCTTCTCATGTAAGGTGAGGTGTTGCTGTGTATGTTTCAGGGAATG
TTAGTCGATGGTGAGCTTCTGCATGGCTCATTCGACAATGCTGATCAAGTCACCATGATA
AAAATTTGATGTTAGTTTTACTTAGTGTCTTGATTCATCCTGCTTCGGTGCTTTGTAATT
GTAACACCAATGTATTTGCACTGCTCTCAATTTGCTAGCATCGCTACCCCCTACATCCGT
GGTCCAACAGTGCACGTCAGAGAAGCAATGGCGTTTGTCAAAATAGTAATGGCATGCTTG
GGTCTGAACTGTTACCGAGACCAGATGGAACCTGTCTGGACACTGATCGCCTAATAATTT
TTTACTGTCAGTTGTTTGCAAAGGTTTACTGTCATATTAGTTAGCTAGAGCACATTTTCA
TGATCACAGGTGGATCTAGACTTATAGTATGTAGGGTGCATATATGTAGCAGCGTGAAAG
TGTGAATCTTTGCGCATCATTTCGTAGCGTATGTTCCTGTCATGTACCATTTGTTGTGCT
CTTGTTTATCTTCTTCTACTTGGTTTTTGCTAATTCTTTTGCACTTAATTCATAGCTGGT
GGCTTTTATGTTGTCCGGAACCTTCCAGCTTACAATAAAATCAACTTGTGCATATCATGC
TAACGCTGTATCATGCGCAAGTGGCAGGGGTTAAAGTACGCACAAATTTCCACGAGTTCT
TGTCTGTTGTTGCTAGTACCATCTAATACTGGTTGTTGGTTCAGTATGACGCACACAAGT
TGGTATTGGTCCATCGGCTTCTCTAGTCTAGATTACAATAGTCATAACAGCTGCCCTATT
TACTAACATGGCAGGACACCAGCGTCAGTTCTCACTAATCAATTCTTCCTCCAGGTATGC
ATATCCCTTTTTCACAACTTACATATTAGAGTAGAAGAGGTTATGGACAATGATATTCTG
CAAATTAGATGTCTGTGCTGAGAAAGTGACTGTTTTATAAGGGCCTTTATGCACAGTCAT
ATCTAAGTTATGCATAATACCATGGCAGTCTGTCTGATAGTAGATTTTTAAGTGCCTTAT
TTGCCATCGGTACTTCTATCCTGCAGTGCATGTCTTTATAATATATGTATTTGAGAAGAG
GTATTTGCATTGGAATCACATGTACTTCTCCAAGCCCGTAGGATTACTATACTTTGAAAA
ATCACTTTGTCTGTATGGTTGCGAATTTACTAGTTGTAGTTATTGTTGGTATGTAATCCT
GTGCTGGAAATTTTAACAGTCTAGGACCCTCTAAATTTAATGAAAATAATTGCCACCTAT
GCATGCAATCTTTAACCTGACTGCAAATTCCACCTATCAAATCGCCGTAGCTTCAAAGAA
GTAGACTTGCAGTGTCTGATTTCATGATTTGTGTTATTTAGCTATTTCATGATTTCATCG
TGATAACAGTTGTTAATTGGCCTTCATTTGAAATTGCAGTTAAATCCCTAGCTATATGCC
ACTGAAACATTGTGAACTTCTTCATTGTTCCATTGACAAGTTTGGTTCAGGCCAACATGT
TAGTCAGACAGTGAGTGACACAGGGAGGGATGCAGTAAACAACAGCTGGGCATGAAAAGC
CAACAGATCGTCCAGGCTTCCCTTTGCAGGAGGCAACCAAGTGTTAAACAATACGGTACA
ATCTTCCACTGGCACAAGAGGTTGATCTGGTCTGAAAAGCCATGTGCAGATGGAAGAACC
TGTACCACAATCTTGAATAATGCAATGTTACATAGTTATTTCGATGGGGTCATGGATGTC
CTTACTTCCTTCGCAATGAGGTAAGTGTTTCATCCCTGATCTGTCTCCAGTTAGTTTGTT
CACATGTTCTCTATTCTAACACAGTGCAACTGTGCTGTTATAAACACAAATTATGTCTTT
AAGATGTCATAATGCTTATTTTTCTTAGGCTGAATAATTCTTGTCATGAAATAGTTTTGG
TATCCTGTCTACTTCTCTAGAGTGGATAGTGCAGCTCTTATATCCATGTGTTATATGTGT
GCAGTGTTACGTTTATTCGTCATTTTGCTATCTTCCAATTTTCCCCACTATTCAGTATGT
GTTTCCTCACACAGAACTGCAAGTAAAGCTACTCATGTAGTTTGATCTTGACCATTCACT
GCACTAGTGGTCCCATATCATGCTAATACACGTTTATCCAGGTGTCATCTTTGTACTTTT
CCAACTGTAATGCTTCCAGTATCTTCCTACATCTCACAAAAGCATTGAATTTTTTTAGTT
CATAAGTTGTTCTTGGCTTCAGGTTCAGTTATAATTTTATTTCTTTTATCTTTTGCATGG
AATAAATTCAGTTATTTAGTGCTTCCAGTTTAGACTTATAAACCAAAATGGAATCCATGG
TCAATAAGGCATTGGCGACATCGCACTGAAAACAAGAAATAGCTTCACCAGTACAAATGG
CATTTGCTAAAGAAACTTCCACTCCATCTACAGCATTACACCAAACAGTTAAATCTGAGA
GACATTATAATAAAGTTCTTAATTCCAAGCATTGGTAGACATTGCATAATAAGTGTACGT
TTTATACTGGGCTGCCAGAGCGTCGGTACCAAAAGGATTCCCCACCCTCCCGAGGACTCG
TCCCAAAATGAAGCAACTCACTGAACATTGACCTGCTATAACTTCACGCAGGAAGAAAAT
TACCGTACGGTCTCACCAACCTGGACTTGGTGTCACCGCTGGTGGGGGGGTCCGGTCACC
TTGGGAGTTATAGCAGCTTTTATTTCGAGGGCCATAGCCAAGTGGACCTGAATGCTAAAC
TCATACTCAACCGAAGTCAATTGTTTGTTACCCTTACATTCAGTTGATCAGTGAGGAGCT
GTCCATCTTCGTGCACCCAGTAACCTGCACCAAAACAGAAGCATCAAAAGGGCATTTATG
TCATGATGATAAGGCATGGAAAGTTCAGTTTTCATACCTTCATATCGCGCTAATGATGTA
TAGCTCTAGCTTGCCTTCTCCTGCTGCTGCTCTATTTAGCTCCTCTGCACTCAGCTGTCA
GCTCTTGGCTTCCGAAAGGCAGCAGCATATTACGCGCCTACTCCAATGGGGCGATCGCCA
TGCTGTGACAAGGTTGGCCTGAAGAAAGGCCCATGGACTACGGAGGAGGACGAGAAGCTT
CTTGCCCACATCGAGGAGCATGGACACGGGAGCTGGCGTGCATTGCCCTCCAAGGCCGGT
GAGTCTAGAAAAGCTTGAATTTCATCCGGTTGCTGAGAAACAAAGGCGTCTTTCTACGGA
GTTGGTGAGGGTTCGGCCAACATCTTGCAGGTTTGCAGAGGTGCGGCAAGAGTTGCAGAC
TGAGATGGACCAACTACCTGCGGCCGGACATCAAGAGGGGCAAGTTCAGCCTGCAGGAAG
AACAGACCATCATCCAGCTTCATGCTCTTCTTGGCAACAGGTGTGTAGTGGCTTTTATCT
AGTTTTTTTTTTCACTCAGATTATTACGGCACAGTTACCAACTTAAGCTCCCTTCGGGTT
TAGTACAGATCCTTTTGTTGCCTCTTCATTAATATCTTACCTGCATCCTTTTCCGGGGCC
AAGATCAAGTGCAGAGTCTCTGACCTTGTCAGACAGACTGCTGTCTGCCCATAACTAATA
ATAATAATGCATATGCATTCCACTCCTATTACATCTGAAAGCAAAAAATAGAAGACGAAT
AGTTTGTAGTGTTGAATGCACCAAACATCCCGCTCAACTTTCAGATTTGTCCTGATTTCT
GCACCCCCAACAAAGAATTATGGCATTTCTGTTGTCCAGCAATAATAATGCATGAATATG
CGTTCTATATATGTATATATGATCAATCTCTTAAGAAGTGTTACTTCCTGGGACTGTGCA
GGTGGTCTGCCATCGCGACACACCTGTCGAGGCGCACCGACAACGAGATCAAGAACTACT
GGAACACCCACCTCAAGAAGAGGCTAGCCAAGATGGGGATCGACCCCGTCACCCACAAGG
CCACCAACGGAGCTCCGGCAGGCACAGCGGCCGACGTCAGATCGGCCAAGGCCGCGGCGA
GCCTCAGCCACATGGCCCAATGGGAGAGCGCCCGGCTGGAGGCCGAGGGGCGGCTGGCCC
GAGAGTCCACGATGCGCACAGCAGCAGCTTGTACACCGACTTCAATCCCAAACATGCCTC
CAGACCCTGCCGCTTCCCCGTGCCTCGGCCTGTTGCAGGCATGGCAGGGAGCCAAGCTTG
ACTCGGAGTCGCCGACCTCCACACTGACGTTCATGGGCGGTAATAATAACAGTGTGGCAT
CCGAAAGCAACTCGGCGACCGCGATGTGGAAGTTGAGAAGCTATGATCCGGAGCGCGAGG
AGGACGACATGCGCAGGTTCCTCCTCCGCGAGCAGCAGATGCAAGTGCTGGAGGGCGAGG
AGGAGGAGCCATGGTTCCAAGGGGCCGCAGGCGTCGGAGCCGGCCTCACGGACATGCTGC
TGCTCGCTGGGTCCGGCGCCGGTGGCGTGCATGATGCGCCGCCGGAGTGCTGGGGCGAGT
CCAGCAATGGCAGCCAGGCCTCCGGGGGGGACGGAGAGAGCGGTGGTGGCGGCAGCAGCT
ACTGGAGCGGCATCCTCGGCATGGTGGTCAGCTCGGAGCTGCCATCGTCCCATCCCCATC
TACCAGCATTCCTCTAGGACGGGGACGGGTTCAGGCGGAGTCCTCTCGAGTCTGTACATT
TTTATTCTTCATTCATTTTTGGTCAAGGCTTGCACCAAAAACCCACCGAATCGGCTGCTG
TGAGGATGCAGTAAATAAACTGGGATTGTACTCTTTATCATGGAGCAAGTAAAAAGGATC
AAGATGAGTGCGTGCGTGTCGAATGATAGGTCATGCAGGAGCAGGACCGGCGACACCATA
GTTAATGACGCACGGGCTTCACAGTTGGTTGGTTGAATGCCCAAGCTGCCGCCGTGTCCG
TCTCCCTTGCCTTCAGATCAAGATCAAACCCCAGAATGATTGACCGGCACTGCTCAGATC
AAAGCTTCGGTCCCCAGAGATTTATTATCTTTTGGAATAAATGAGGGAATTTTCACAATA
ATGAGGGACTGCTCAGTAAAGGTAAACATCCAGTTTGTGTTTTTACTCCATTTGGATGGA
TGCAAATGCGCTGAAAATGAGGCAATTGACACTGAAACCGCAAATACTACTCCCTCCGTC
CATCCACAAATGTAAGATGTTCTAACTTTTTCTTGTGAATCAAATATATACAAACACGTT
TTAGTGTGTTTGTTCGCTCATTTCAGTCCGTATGTAGTCCATACTGGAATATCTAAAACA
TCTTATATTTATGAACGAAGAAAGTATATATACAAGATAATACGAGTAGTACCAGTTTAT
AGTTCCAGTAACACATCAGTAGTTTAAAACCCAATAGAAACTTGTACCGGTTGTCAATGT
CGAATTGCTTGGAGTAACGTCTGCGAGCCCAAAAAGTTTGGTATTGGGAAGCCAGACTGT
ATTGGCGGGCTTTGGGAGATCATCGACCCAATTTACCCCCTTATAGCCTATTTGGCCTTT
CATCCTGCTCCTCATCCTTCGGAAGATTTGGGACCCCAGAAATGCCAAGACTTTCCGCTT
CATCGACCGACACTTTGCCACGTCTATTAGACTCATGATCGCATATTTAGACCTTTGGTC
ACACAAGCTATGTAAAAATGCTGACAAGAAAACCGCCTTCTCGTAGCTGGTATTCCTCTC
CTCACACGCATGTGTCCTCATGTAATTCTGCAAACTTGTAATCAGCTCCTTCGCAAAAAA
AAATTGTGATCAGCTACGGCTGCTTTACCGTTGAGTAATATAATCAGGTGGGTGAACTCT
CCCACCCCAATGGTTGATTCCTCAAAAAAAAAAAAACAATAGACGACCATGTATCAGTCT
ATCAGATCATTGTTGTCTAGCTTATAAGAAGAAAAAGAAGAGAGAGATGAATATGGTTGC
AGCCTTTCCGGATGAACAGTGACATCGATGCTGTTTGCAGATAGTGCACTGCACACAAGA
GTAGCATAAATGTCTGTTTAAGGTAATAATAGATGTTGTAATCAAATACTCCCCAGTTGG
CCAGCTGTATAAATCAAATTAAATAGGCAGGCCAGAAATATAATTATAAAAACCCATCGC
CATCACACCCTCTTCATTTTCTTATTCTATTTTGAAACTGCACCTTCTTCAGTTTTTGCA
CATACTCCACATGCTACTTATACAGACCATCCAAAATTTACAGGTGTGCTTGTTCTATTA
GTTATATGGGGTACAAATGAAATGGTATCCAGTTAATTTTTTTCGGATCTTTCTAGTACC
CAGCCCTAATGGCAGACCCAGAGCGCCGATAACATGAGGCTGGGAATGATCCTGCCTGCT
GTTAGGAAAGCAACTTATCATTATTGAAGGCCCAAGGGGCATATATATATTACACAAGAT
TTGAGGTGCAAGGAAAATAAACATAGACTAATAAGGACTCCTAGACTAATACTAATACAT
CCTAACA