morexGenes - Barley RNA-seq Database

Contig contig_43057
Source Contig contig_43057
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_43057 (6959 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_43057

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58855	1	723 bp	MLOC_58855.1	Available	Available	LOC_Os06g22690.1, FRAME:+1, EVALUE:2e-57, 13106.m02439 protein bundle sheath defective protein 2, putative, expressed
CDS Structure of MLOC_58855

Contig Sequence (6959 bp)

>contig_43057 6959 assembly3_WGSMorex_rbca.fasta
TAACCACCCAAACAAGCTTCATGACGAGGGCGGCGTGCCGCCGCGCCTCCGTCCACTAGT
TTCTAAAAATAGCACCTACTGGTTCTTGCCGAACCCGTCATCAATTTAAGCCCAACTATA
AACCTTTTTCAAATAGTGGATGTGGCTCATGCGAGCCACACCGAAGCGATTCAAAATTAA
CAGCAAAATAGACTAAAATATTAACAACAAAAAAAGGGAAAAACTTGTACGATCATCAAG
TTTCAATTTAAATATTAACAAACAAAAACTAACTTTTGACATCTTGCCGTATAAGCAGTA
GTGGAGCTAGCCCACTGGGCCAGTGTGGGCCAACAGTGGGAGCTGTTCATATAATTATTA
TTTATTCAATTTACAATTTAGGTGGGCCGTGACCCACCCAGCCACCCCTAGCTCCACCAT
TGCACGTAAGCATCTGAAGACCAAACTTAATGCCACTAAATTTCGTTTGCACAACACAAA
CCGTGGGTTTCCAAGGTGGATTTGACACCATATATGAAATTTTCTGCGAGGAGCCTTAGT
GACATATTTTTGTCACAAATAAAATAATTATACATTTATTAAATGCGATAAATGTCCCAC
TTCTAAGGGACTAATTCCTTGGAGCAGATACAAGTAAAAATGTTACAGATCTCTCAAAAT
TTGTCAAATACAACATAAGCAAAAAAATAACAACATAAGCATTTCATTCGGAAGTGTCGT
CGGCAGTGCTCATAAATCCACCCAAGAAGCCAGCGCCATTGCAGCTCCCACATAGAATTT
CACGCTTTCCTCTGCCATGTTTTAAACGAACCGACAGAAAACATTGGGAATTTAGATAAT
TTATTAATCGGCCACCGAAATAGAGTATTGTCAGATAGAGCATGACTTATTTTACCTGCA
AAGCCAGCATAAGCCTCCAGCTTTGAATCGGCCACCGAAATGGTCTTCCAAATTCTCCCC
ACCTCCCTTGCATTGGGTGCATGCGATTGCGCCTGCCGTTTGCCATAAGATTGTTAACAC
CGATTGGAATGAGCTCCCGTGGCAGCGATGCACAGAAAACTGATCACGACAAGAACTCCA
CCAAAATGCAATGAAGACTCTCAGATCCACTTGAAACATTGTTGCACATTGATCGATACG
GCATTCAATTTGCACCAAGACCGAACTAATCTTGCTATAGCTGAGCATTTAACATGCTAA
AAGTGCACGGAGACATGAATTTCTTCAAAATAGATACATTTTTCCAAGAAGTGGTGTACT
GAAGTAAAATCCACATTATTGCACTTCCAAGGTTTAACAAGTCGGTTCAGAGAATGATCA
AAACATCAAACAACTCACATGTACACTGTATGCATTTGTTGGTAAAATATATTCCCTCTG
TAAAGAAATATAAGACCTTTACAGAGGGCGTATCAGTTAAACAAGCAAAAGAATTAAGCC
AATAATGCTATACTTACGGGATGAATCCTACTGATTCAGCCTACGAACTGATGTGGCATG
CAGCCATGCAACGGCGGGAGTCAAGTTCGGAACAAATGAGTTAAGTCTTCCAATTGTATG
AAGCCACGTTGCGTCCGTAACTTGAGTGCGTAGCTATTTTCCGTAAGTGTAGCATTATTC
GAATTAAGCCATGGCAGTACATAGCTATAATAAGTGCTCAGGTAAAATATAATAATACTA
CAAAATTCCGCTTCAGAAGCATGGAACTGGGTCACAGAGCACAAAGATTGCTAATGCTAA
CCACAGTTACATCTCCATTGGTAAAAGAGTTTAATTTTGTTAGGAAACCAGATTAAAGAA
TGATAATAAAAGATTCCAAGTGTCGTGAGAACACCATATATCAAACACATGGTCGCCCTT
TATATAATAGCGGAGGAAAGCCCAAGGGCCCAAACCCAATCAATTCGGTTTTATCACTCA
CTTGTGGAGACAGGGAGCTACATGAAGCTTTTTCCTTTTTTTTTTGGAGCTGAACCTGTG
AGAATTTCTTCTCACAGCATATTCTTATAGATTTTGTGGTTTACCCAAACAGTACAACAA
AACGAAACAGAAGAAAGCAAAGAAAATACAGCAGTGTCAAGAGGCACAAGGAGTGCCCAT
CCTGTTGCCGTCTAGTGTCTATACTATCTAAAGGCTTGAGCCGAGTCAGTGAACTGGCTA
TATTTTTTCTTCTTTGCCCTGTAAACCACCCAATTCAGCTCCTCTTTGAATTTTCTCCGG
CAAGAATACAGGATTGGCTCAAGCCCTGTGAAGATGAAGTGATTCCTGGTGTTCCAAATT
GCCCAGGAGATCAGAATAACAATCTCTAAGGAAAAAAGAAAAGGGGACCTGAAGATGATT
TTTAAGCTGACTGAGCTGCTCTTGGATGGTGCTGGTGCCAACCATGCACCGGCATCCAAG
TTGGGTATAAGTGTCTCCCGCAAACTTGAGCAAAATGGCAGTGTAAGAACAGGTGATCTC
TAGTTTCAAGCACCCTTAAACCACACATAACACAACTATAATTACGGATGAAGAGATTTT
TTTTCTCTGAAGTAAGTAACTCTCTGGTGTTCAACCTATTGTGTACGAGAAGCCAGTAAA
AAAAGTTGTGTCGGAGTTGACAACAAGTACTCAAAGCCGCTTAGAGACCTTGTATGAGTA
TGACAGAGCACCAGGTGGAAACTGACACACATCCTATGCACTGAGCTATTTGGACGAGTA
CTCGAAACTAGAGATCTTCTACCCTATGCATCCACATTTCGACATAAGCTATCCCACGCC
TAATCGAAATTAGTAGTTTAGTGCTCCATTTCAAATATTTCCTACCATACACACTGGTTG
CTCCTTGTAGTTTAAACTTTAAACAGAGAAGAAGAAGGCTGGCTTACCATTCCCTTCACA
GGCAGTGCAAACAAGACTGTATGCCTTCTTTTTGGTAGCTTCGGGCTTCTTTTCGCCCTG
GTCCTTTGCTGCTGCCTGTGTAGATGAAACGATTTCAGGAACTGAGGTACAATGTTACCG
TGGAGTAAATTACTGTTTCTTTGCGTGTTATCATGGGGTAAACTACAACGTAGCTGCAAG
AAACAACAGAGGCACCGCACCACAAGTCTAGGTGGAACTCATGGCTATGCACCCCCAGTC
CAACGGACAGAGAGGTAATTCAAGAATACTGGCAGCAGCATAGGGAGAGACGGGAAAGGC
AGTGCTGCAGACCTTGGCCTTGAGGGAATGGAGCCTGGAGCAGCGAGAGATGGGGCGGAG
GAAGAGCACGGGAGGAGGCGAGGTTCTAAGGGCGGCCGGAGGGGAGGTGACGGTGGCCGT
GAGGCCGGAGGTGGCCGCCATTCGAGAACGGCGTGTGCGAGGGAGGGAGCTGAGAGTTTG
GAGGAGAGAGTGCAGATGGGCGGCCAACAGGTTAGAGATAGAGGAGGCCAATCCACCGCG
ATAAGGGAGGTGGCAGGGGCCAACGGATGGTTGCTCATGGGCACTTTTGGCGAGAGATAT
TTGTTGTTAGACATGCCACCTCAAGTAAACAACGAGTTACACTGCGCGTATTGATGCATT
TTACGGTACAGCACCATTGAAACTGAAAAACTTTCGCGTCTCATTTACAAATATGTTTCA
CTCTTTCGATCAAAAAATAAATAAATTGTTTCACTCTCGTCTCGGTGATGGCAGACTGGT
CCCGCCTAGGGATGCAAGGGGACGGCATCCGCATGTCTGTGATCGTTCGTAAAGCAAAAT
TTTACACTAATTTTATTCAGTTTGATAAACGGGTAAAGAAAATGTTAGTGGACAATCAAT
CCGTTCGTATTTTCCCTGAACGGTACGCAAAAATGCGAAGATATTGAAGGGTGGAAGTGG
CTTTGCTCATTTCATTGTCGTGTAACTTCAAGATATGATCTAAACACATGGATATTTATC
CAAACAAATACGGTTCAATATTGAAATTGTATTACTTGTATCCTAATGACAAGTATTAAG
TATAGCAAGTGTTTGAGATTGAAATGAAAATCCCTGTTCATTCCTCTCAACAAAAACAAC
ATTTATACAATGGGGAGAGACGCGACGATGTGAAGTAAGATGTCGGTTCCAGCCCGTGGG
GGTGAAGCGCCGGTTGAGGGAGCAACCGTCCTGTCGCTACAGGAAAAGGGGAGATTTTCC
CTAATTAATTTTAGCAGTCCCCCTAATCTATGCTTGACCATGTAGAGTCACTTCACGATT
GTTCGGGTAGCGATATCATCTCGAAAGGATTCTCCTCCAAAAAGTTCTTCATGGAAACTT
GATGAGAACCTGAAACATAAACTCACAAAGAGATAGCACAATGTGATGTCATTGAACAAA
GATATCTCAAGAAGAGGCTCCCCTGATGCCTGCAACTCCCTAAGTTGTCGCGTACCAATT
CCATAAACATATTCCTGGAATATTTAGTTTGGTACATACTTAGTAAATAGATCAACAAGG
TTGTCGCACGATTTGACTTGTAAGATGCTTATTTCCCCGCTTTTCTGAAGATTATGGGGG
AAAACCACTTAGGAGAAATATGCTTAGTGATATTACTCTTGATGTATCCTGTTTGCATCT
GCGCAACATAGGTCGTATTATCCTCATAGATAATGGTGGGTGATTCTATCGAACCAATTC
CACATGACTATTGTATGTGGTTTATCATTCTGCGAAGCCATACACATTCACATGATGCTT
CAAATAATGACATTATCTCAGAATGATTTATAGATGTTGCCACCAGCGTCTGTTTTGAAG
ACTTCCATGATATAGCAGTACCACCATGTAGGAACACAAAGCCGGTATGTGATCTGGCAT
TATGGGGATCAGACAAATAGCCGGCATCTGCATATCCAATCATATCAGAGTCTAGTTTCG
CTAGAACTAGAAAAATAGGCCAAGATCCTTTGTGCCTTCGAGATATCGAAAGATATTCTT
CACTCCAGAACAATGACGTTTTATGGGAGTTGCATTGTGTCTAGCAAGTAGATTCACTAC
AAATACGTTAGCGGGACTTGTGCAATTTGCAAGATACATAAGCGCTCCAACAACACTGAG
GTATGGAACTTCAGGTCCCAACACCTCTTCTCCAGCATCCCTTGGCCTAAACGGATCTTT
CTCTACGTCTAGAGATCGAACCACCATGGGAGTTTTAGATAGATAGGGTTTGTCCATATT
GAATTTCTCTAATATTTTTTGGATATAGGTAGCTTAGTGTACCATGATTCCTGAGGGAAG
GTGCTCAAGTTGGATACCTAAGAAAAATTTGGTTTTACCCAAATTCTTCATCTCCAATTC
CATCTTTAGGTGATTGCGTGCTTCATCAATGTCTGGTGTGTTGCCAATGATGTTGAGATC
ATCAACGTACACAGAAATGATGCAAAATAATGTAGAGGACTTCTTGATGAAGACACATGG
GCAATTATCACTATTGGAGTAACCTTTCTGAAGAAGGAACTCACTCAGTCGATTGTACCA
CATCCGTCCCTCCTGCATTAAGCCATATAATGACTTATTCAGCTTTACATAATACATGTT
GCGATTTGCACTTTCATTCGAGACAGAGATTCCATCAGGAACCTTCATATATATGTCTGA
ATCTATTGACCCATAAAGATATGCGGTCACGACGTCCATCAACTGCATGGATAGACAATT
TTGCACTTCCGATGATATAAGATATCGGAAAGTCGTTCCACTCATTACTGGAGAGTATGT
TTCATTGAAATCCATGTCGGGTTTCTGCGTAAAACATTGTGCTACGAGTCTTGATTTATA
TCTCACCACCTCATTGTTCTTATACCGTTTCCGGATAAAACCCATTTGAATCCCACGGGG
AAAACATTGGGAGGTGTAGGTATTGCTTCACCGAATACCTTTCTTTTGTTAAGCGAGGCA
ATTTCTGCTTGGATTGCATCCTTCCATTTAGGCCAGTTGGAGCGCCTTTGGCACTGAACA
ATAGACCTTGGATCATAATCAGTGAGAAGGGTATCTGCAATCTTTTCAGAAAAATATATG
TCGAAGGTCGTAGTCTTATGGTCAAATGATTCTCCAGAATCAACATAGTTGATGGAAATT
TCCTGCACCCCTAGAGACTCTTCGTGATTTCCCAATACGATTGAGTCTGGGTGTTCCGAT
GTTCCAGCCAGTTTGTTCATACTCGAGGTTGGTTGTGGAGGTTGCCCTTCCACTGGGTGT
ATACTATCCATCAGGTGTTTGTCAATGTTGAGTTGACCTGCATTTACTCACTCCAAGGTT
TTTCTCCTCGATTTCCTTTGTTGCTTGCTAGAAGTTTGCTCTTGGTCAGAGGCCGCACTA
CTCCCCCTCTTTTTAGGAACACGGAGTTGAGTGGCTTTTATTGGCACCTCCACTCTTTCT
AGCGCGTTTCTGGACGGATTTAAGGATTTTGTAACACCTTTCACATTAGTAAATGAATCT
GGCAGATGATTTGCAAGATGTTGCAAATTAATGATCTTCCGAACTTGAAGTTTGGTCTCA
TGGGTACGTGGATCAGAGGATGAAATGTCATGAGCATTCCAATCAATTTTCGGGCATTCT
TTCTAGTACTTGAAATCTCTCCCTAATGCCGAAAAATGTTCCGCATTGAATATGCAATCA
ACGTGACAGGCTGTGAACAGATCCTGAGTAAGGGGTTCCACGTACTTAATAATCGACAGT
GATTTGCACCCCAATAGATCCCCAACTTTCTGTGTGGGCCCATAGAAGTCCGTTGTGGTG
GTGAGATCGGGATGTATGCAGCACATCCGAACTTACGCAGATGGAAAATGCTAGGAGGAT
ATACACGTACCAATTCCACACGGGAAGAACTGTGATATGCAGTTGGCCTCAATTGTATCA
AGTCAGCAGCGTGTAAAACTGTAAGTGCATCTAGTGCCNNNNNNNNNNNNNNNNGTTTGA
AGACTTATAGGTTAAGTAAGTATCTAATGTGTTTATAAGTATACACAGGCTCTATAAGT