Contig Data
morexGenes
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Map Locations of contig_43048 (6587 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_43048

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58847 1 900 bp MLOC_58847.1 Available Available LOC_Os07g01870.1, FRAME:-3, EVALUE:1e-115, 13107.m00106 protein ribosomal protein L13, putative, expressed





CDS Structure of MLOC_58847






Contig Sequence (6587 bp)

>contig_43048 6587 assembly3_WGSMorex_rbca.fasta
TATAATAAAGAAATAGTACACTTTTGTAATGAACTATTGTACATGTTGGCTATAAGATGG
GCTATAGATGACATGGCAATGGCTTATAGCCAGCAGCTGGCTATACTATTATACTTGCTC
TAAGGTATAATCAACGGGCTGTAAGGATTAAAATACTATATTTTTACTGAGTTGGATGAG
AAAGAAGAGGAGAGAGAAGGAAAACGGACTCTTCGTGAAGAACTAACTCTAACACGTGCT
CCTATGTGCTTTGTGAGAATGAAATGTGTATCATATATGATAAAAGTAATACTCTTTTAT
AGCTAACTATTGTACAAGCTAGCTATAAAATAGACCATAAGATGACTTAGGCCCTGTTTG
TCCCGGGACTTTTTTATAGTCTTAACTAAAAAGTCCATAGTCCCTAACCGTTTGTTTTCA
TGAACTAGAGGTCATAAAATGACATGCATAAAGACCATGTTAACCCTAGTAATGTAGTAG
TAGTTATTAAATGACATGCTAAAAATAGGGGCACTGTTGGAAAAAATGGTCAAAAAATCC
CAAAAAGACTCTTTCATAGAGACTTCTTCCTTTAGTCTCAAATACCTTTTTAGTCCCTAA
AAATCCCTCATGTTTATTTCACATGGACTAAAAGGGACTTTTGGACTTTTTTTTTTTTTT
TGTCCCTACACCAAAAAGTCCCTGAAAACAAACACCCCCCTTATAGCCAACACTTGACCA
TACTATTAACCATGCTCTAATGTGTTGCCAGATGACATGTGGCGCCAGGTCACTGCTGTC
CAAACCTGGTGCTCCCGGTTCTCAGTTTTGCCTCCTTTTCGATTCAAGTTAGGAGAAGTG
CAAATAACTCAGCATATCAATGTGCTATGCTCGCTTGACTTGTCTAAGAGCTGGATGCAA
AAGAAGTTATGGGAGGAAACAGCAACATCTTGAAACCTCATGGGGGGGAAACAACAATAC
CAAACAATCCATTTGCTACAAAGATTGGAATTGTATAGATACTCATAGGTTTGAAACCTC
ATCGACACTCTCAGGCTACTAACGTAAACAATAACGACCATTATCCAGCAAAATAGACGA
TGCATGATTGCTCAGCAGGCTAGTACTTGATTGGTGCCAGGATGTCCAACTGAGAACCCA
GCTTCTCCTCTGCAGCCTTCTCAGCCTTGACGCGCAGCTTGGCCAGTTGCTTCCTCCTGT
CGTAAGAGACCTTGGCCTTCTCCTTCCTCTTCTCCTCCAGTTCCTGCCAGTTCAAAAAAG
AGGTGAGTTACATATAGTTGCAGGTCTACATACGTTTTCAAGGCATGCTCAAATCAAGCA
TTAAAAACAGCCACCAATCAAGAAGCTAACATCACATTGGAGACCTTCGTCATGGCCATT
AACCGACATGCGCAAAATTTTAAAAAAAAGTCATCCCTGCCATAAGAGGCCTCAGAGATC
TTGGTGGTTATGATCATCAACTGGGGTGCACCCATCAAGAGTAGCAAATATTAATCTCAC
ATCATAGGCTTATAACTCGAGCACAAGAGAATCAAACAAAAGAACAGGCTAAACGCCACA
ACCAAATGTTAAATGAGAAACAGGTATTAAGAACCAATCCCAGTTTTAAGATTTGCTATC
TGATCTGAACTAACATAATTGAGACAAACTAGCGAAAACAATCCCTGAATGTTAAGAAGG
CCTCAACTGGGAACACCCATCAAGAGTAGCAAATATTAATTTCACATCACAGGCTTATAA
CTGAAGCACAGGATAGTCAAACAAAAGAACAGGCTAAAAGCCACAGCAAAATGTTAAATG
AGAAATAGGTATCAAAGTCCCAATCCAAGTTCTATGATTTAATATTTGAGTTCAAACAAT
TGAAATGAATTAGCCAACAAATTTTAAATAACAATAAGAATCCCTGAATTTTCAAAAAAA
AAACAAAAGAAAACCATGGTTGTTAAAGAGGCCTAAGAGATCTTGGTGGTTATGGTCGTC
AACTCGGGAGCACCCATCAAGAGTAGCAAATATTAAAATCACATCCTAGGCATATCATTA
GAACACAAGAGAAACCAACAAAAGAACACGATGATACCACAGCCAAATGTTTGAGAATGT
TTCCATTGAATGTGTTGTGACAAATGCCATGATTAATCAGAAATCATGATCAAAAAATTA
ATCAGAACCAGGCTAAAAGAAAAACATGCCTTATCATCGGACACAAGGTAACAGATGATT
AATCAAAAAATAGCAATGATTAGTCAGAAGTAGCTGGTTGTAAGAATCATCTTTGTGAAA
AATCAATGGACATCGGTCCTGAGTTTCTGCATCATACCAATCATGCTAAATTTGCCCATT
TACAATGTAAAAAAAAAATAACAACAATAAGAAAACAAGACGTGTCTGTCATAAGAGGCC
TCATAGATCTTGGTGGTTATGATCATCAACTGGGGAGCACCCATCAAGAGTAGCAAATAT
TAATATCACATCATAGACTTATAACTGAAGCAATCAAACAAAAGAATAGGCTTAAACAGC
ACAACCAAATGTTAAATGGGAAACAGGAATGGAAGTCCCAATCCGAGTTTTATAATTTGA
TTTCTGAGTTCAAATAATTGAAACGAACTAACAAACAAATTTTATATAACAATGAGAATC
CATGGTTGTTAGAGAAGCCTCAGAGATCTTGGTGGTTATGGTCATCAACTGGGGAGCACC
CATCAAGAGTAGCAAATATTAAAATCACATCATAGGCATATCATTTAGACACAAGAGAAA
CCAACAAAAGAACATGATGATAGCCACAGCCAAATGTTACAACATGAGAATCTTTCCATG
GATATGTTGCGACCAATGCCATGATTAATCAGAAAAAACAATTGGAATCAGACTAAAAAG
AACATGTCTAACATCGGACACAAGGGGACAAGACGAATTAAAATAGCTTGTGCTGTCAAA
AACAATAGCATGACTAGTCAGAAGTAGCTGGTTGTGAGCATCATCTTTGTGAAAAATCAA
TGGACATCAGTCCTGAGTTTCTGCATCATCCCAGTCATGCTAAATTTGCACAAATGCAAT
ATAAAAGAATAACAAATTCAAATGGCACAACAAAAGTTATCAATGCACTTGACAAGGCAG
CTAATGGAATCTACTAGGCTAAGCACAAAAGGAAACGTGGACACTGCCTTTCGTCAAAAT
CAGTAAAATAGGCGTACACAATATCATTTCACCCTATCACTATCAAAAATCTTATTTCGT
GGCCACCAATAACCTAACCTGTGTTTCAGCTCAACAACAGTTAATTTTGACTTAGCCACA
CAGGGAGAAGCTGTTAACTCAAATTCCCTATAAAAATCGGGCTGATACCTACAAACTACA
CCAACAGGGCATCCACAGCTAACATTGTGAATCAAAGCATCATATGTATGCATAATATCA
TCATCATTTTGTTCAGAGGTGACAACCAGAGTGATCGATGTAACAAAATGTACCTTGATA
GTTTCATGGTAGTTCCACCCGACCTCCTTGGAAAGCTCGCCGAGAAGGCAGTACTTATGA
CCCGGCTGCAGCCTCAGAACCCTATCCAACAATAAGTCACACAAAGATCATCACCACATA
ACTAATTAAATTCGCCATTAGAGGAGCAAGCGAGAAAGATAAGGCGCGTACTTGAGCGCG
TCGGGGATGACCATACGCTTGGTGCGATCATAAGGCGGCGGGACGCCCTCGAACGCCTTC
AGCCTGGCGAGCGCAGCCTCGCCGCGGGGCGTCTTGTGCGGGATCATGCCGCGCACGGTG
CGCCAGAAAATTTTCGAGGGGGCGCGGAAGTGGATGGGACCGTGCGACGGCTTGGTGTTC
ATCCGCTTGCGGAGGAAGCGGAGGTACTTCATCTTCTGACGGACCAGCCCGCCGGAGATG
CACATCTCCTCGCACCGAACCACCACCACGCGCTGCCCGTTGAGCAGCTCCTTGGCCACG
ATCGACGCAAGGCGTCCCAGCATGTGGTGGCGCGCATCCACCACCACGCGACGCGCGGAC
ACACCGGAGCCGGACACCATCGTTACCTGTTGGCTTCTCCCTTCCTCTCTTCCTCCGGCT
CCGGTGTTGGTCGTGGGTGGCGGCGGCGGAGGGGGGAGCACGAAGACGTTAGGGTTTATG
ATTTTATAGGCGACCGGGAGGTAGCAGATTGGGCCGGGCGGTTGCTAGTGCTCCCACAAA
AGAATGATAGGCCTAGTCACCTAAAATTCTGATGGGCTGTACTCCTCAAAAAGTCCTAAT
ATGCCTTATTCCCAAAGAAAAGGCTAATAGGCTTAGACTCTCTCATGTCTCAATTTGTCC
ATGGGCCATATGGCGAGGAGATTTTTATTTCTTCTACCTTTTTTATGTATTTTCCCTAAA
AATAAAACTAATCCCTCTACCGGGGTTGCTCGCTTGATCGCATAGGGTTCGTGTGGAGAA
CAGATGTCGTTGCTGGAGATACTTTTGGCCCCTCGCCTCCAGCTACCATCTTGGCGCTAA
GAGGTAAAGGGACCTCACATCTTTAGAAATTTCATGACTTCCGTTAGTTTCTCGTGGTTG
ACATGGTGTTTTTTTTGCAAATGAAGTTACTCTGGTTCCTTTTGTGATGGTGCCCAGGAG
GTTTGTTCAGATCTGATGAGTTTATATTATTGTGTCTTGTTGCTTTTGTTGGTTTGATTC
TTTATGGAATTAGAACTTTTCTTTAACATTATGGTGAAGATATAGTCATTCGAGGGCTTG
CACTCTAGGGGGGTCATCCCTGACTCAAGTACGTTCATCGCTCAAGACTTTCCATCTTTT
TGGATTGCCACTCAAGGGGCTTTTAGAAACCTTTATTGGTAATCATGTTCGTGTGGGTGA
ACAAGAGGACGTATCGATGCCTCGGTCTAATTACAATCTCTTTACTCAAGTCTTGGAGGC
ATTTTGTCTTGCAGAGATCAATACCATGGAGCAGAAGTCTCCAAAATATATTATTATAAT
TATTAGTCATATGAGTTACTTTGCATCTTTATGAATGTTACATCTAAAAAATGTACATAT
AATGGTTATACGTACGAATAAAATTTCATGGATTTCTAGAAAACCTAACCCTTCTTCTTT
TGCTAGAAACAAAATTGATCCTTCAACTATATATCTGAGAGATCTTCATGGTACAATATA
CCGGGGATGGCTCATTGACGGGAAGCCCGATACTATGTCAGGAAGCCCGTCAATTGTTTA
ATCAGTTCGCCTAGTTTCCTTCTGCTCATGTGATTCCGGGTGGGGCTTCCCAGTTCTCAT
GGTTCATAGCATTTGTCATGGAAGGTGCAATAGGGTTCTATCAACCCGTCTCGGGTATGA
AAAAAATAAAACTTATAGTCAATCCACCTTTTCAATCAAATGGCTTATGCGTCGCCAAAG
AAAGGCATTGGCAATGATTATAATTGTTTGTCGTAAATACGTAGGAGGCACAAACACAAC
ATGAATAGCCACTTGCACACAATTCAGAAAATACATCCTGCAAATAGCTAGCCCCATATG
TATTCTTAGTCATGAGAACACCCCTCGGGTGATTCATCGAAGGAACATTCCTTATACATG
TCCCGCATGGCTTGCTTAACTCCCTAGGTGCGGTCGGTCTTTACATCAATAGCACAACTA
CTCATCTAGTATAGATTATGAATAAAGGTATTTCGTTCCCATAGATAAAAAACATGTTTT
CCTTTTTATGGTTTATGGTTGCTAAAAAGATACACATAATGTATTGACCACCTCGAGCTA
CCACCAGTGCAACGACGTCCTATACAAACGGTTTTTATCCCCTTTCCATCATGGAGGTCT
AAATTGTCGCCTTGCTTGTGTGTGCGATAGAGGGGCATCCCATACGACACAAAAAAAACT
GTGATGTGGAGCAAGAATGCAAACGTTTGAAACAACTAAGTTTATGCGATGTTCGTCTCT
ATCACAGGCGAGAGTCATCAATAAACCGTTTGTGATGTATCATATTTCTCAAATGCTCCA
TCCTTGCTACTCGTGTGAGGTCGCATTACCATTACACGTGCTATTCTATGATGTAACATT
TATGATGCACGCCACATCACAAAACATTTCATGATTGTAAAGCGTGTATGATACTACTAC
TTGTAAATTGTGTTGTGATTTTCCCAGAAGAGGAGAGGAGATGCAGCACAGTAGAGATAA
GTATTTCTCTCAGTAAGAACCAAGGCTATCGAACTAATAGGAGGACCACGCAAATGCCCG
TCTTTAATGCCTACACACAAAAGAGCATGCACTTGCACCCAACGCGGGCAAGAGAGTTGT
CAATCCCCTTGAACTCGTTACTTGTAAGTGATAAGTAGTGATAGATAGATAATATAAATA
TAAAATAAAATAACATTAAATAAAAATTAGCAATATTTTGTTGTTTGAAATATATTTGCA
AAGACCCGGAGGCATAGTTTTCGCTAGAGGCTTTTCTCTCGCAGAAAGCATACAGTGGGT
AAACAAANNNNNNNNNNNNNNTTGATAGAAAAGCGCATAGTTATGCAGTATTTATTCATG
GCAATGATCATATATATAGGCATCACGTCCATAAGCAAGAAGACCGA