morexGenes - Barley RNA-seq Database

Contig contig_42971
Source Contig contig_42971
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42971 (8705 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_42971

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58764	7	2571 bp	MLOC_58764.5	Available	Available	LOC_Os02g46970.1, FRAME:-1, EVALUE:0.0, 13102.m05282 protein AMP-binding domain containing protein, expressed
MLOC_58763	1	1540 bp	MLOC_58763.1	Available	Available	LOC_Os02g46962.3, FRAME:+3, EVALUE:0.0, 13102.m05280 protein VHS and GAT domain containing protein, expressed
CDS Structure of MLOC_58764

CDS Structure of MLOC_58763

Contig Sequence (8705 bp)

>contig_42971 8705 assembly3_WGSMorex_rbca.fasta
CTCAAGACTAGTTTTAGCCTCTCTTTAGTCAGGGGTGCTTGGAACTTTAGCGTCTTAAAA
GACTAGTTTTAGTCATCCAAACACCCTCTAGAGTTGTTGGCACTTGGCCAAAAGCCCACC
AAAATCTGAAGGAGACCTCGACTGGAAGGCACCGGCGGGCGGGCGGGCGAACTCCAACCA
ACAAACCACGCGGGGCGGCCGGCCAAATCCACGCCACCACCCACGCCTGCGAGGGCCTCG
CCGCCGCAGTCCGATTCGACTCCCCTCCTCACCCCGCCTCCCTCGATCCCCGCCGCGGAA
GGTATCCTCTCGGCCCCAAACCCTCGATCGATCATCCGCTTTCCCCCCCAATTTCGGGCC
GGCGGTTGGTTGCGCCGTCCCTTTCCGTCTTGTTATATCGAATCTCTCCGCCCTGCACAA
CACCTCCAGTCTACTGACAATTCAACTACATAGATCAGATAGAAATTGCTGTTCCTAGTT
CGAATTGAACTTCCGCGCCGACGCGTTAATTAATCTAACAGTGCCGTGCGGTTTCTCCTT
CTGTTTTCCGTAGCGAAAATGAGCGACAATCTGATGGAGAAAGTGAACGCCCTCGGCGAG
CGCCTCAAGATCACCGGGTCGGAGGTGAGCAAGCAGATGCAGGCCGGCATGAGCTCCATG
AGCTTCAAGATGAAGGAGCTCTTCCAGGCGCAGACCCCGGCCGACAAGATCGTCGAGGAC
GCCACCGCCGAGAGCCTCGAGGGGCCCGACTGGGCCGCCAACCTCGAAATCTGCGACCTC
ATCAACACCGAGCAGGTGAACAGCGTCGACCTGATCCGCGGGATCAAGAAGCGGATCGTG
CTCAAGGAGGCCAGGGTCCAGTTCCTCGCCCTCTTCCTCCTCGAGACCATCGTCAAGAAC
TGCGAGAAGGCCTTCTCCGAGGTTGCGGCCGAGAAGATCCTCGATGAGATGGTCAGGCTG
ATTGATGACCCCCAGACGGTGGTCAATAACAGGAACAAGGCCCTTACGCTCATTGAAGCG
TGGGGAGAGTCTGGTGATGAGCTCCGCTACTTGCCCGTTTATGAGCAAACCTACAAGGTA
AAATCAATGTTCTTTTTATTTATTTCCTCTATTACTAGAGAAATCGGCTGTACAAATTCG
TGTATTATGTCTAGATTCGCTAATTTTGTCCCGTGGCAGTATATGTTAATTTTCCACCCT
GTTCATAATTAAAACAGCCACGATAATCTCTACTGTCCTATTATGTAAGCAAGGAAGGGA
CCCTAATTTAGGACCAACCTGCTGATGGCTATTTTAGGCACTAGTATAATTTCATACTTC
TGTTGTTAGAAGCTAGTGGTTAGTATTAGCGGTCATTGCTTTCTTCATCAGCCTGGAAAT
CACTAAGTATCTTCGGTAACAGCATTGACGTTTATTCCGTTGTGTTAAATAATATCAATT
CATAAGTTGTTTCAGTGTCCATTTTGATGGTAGTATAAAACCCATATGATTTATCCTTGC
AGTACAATTTTGTCATTCTTTGTGACCAAGGCAATTGTTAGTGGTTGCAAGTGATGTTGT
GCTGACCTTTTTTTTTACAGAGCCTGAAATCAAGAGGAATACGGTTTCCGGGACGTGACA
ATGAGAGCCTGGCCCCCATATTTACTCCTCCACGCTCTGTTGCTGAAGCTGAAGCTGCTG
CAAATTTCTCCCAGCAGGCATTCGAAGATGTACATGTGCATACATATACTGCTGAAGAAA
CAAAGGAAGCTTTTGATGTGGCCCGTAACAGCATGGAGCTTCTTTCAACTGTTCTTTCAT
CCTCCCCTCAGCAGGATGCTTTGCAGGTAACTGAATTTTGTATAATTTTCTCCCAAGCTT
GTATAAATACATTTTTACTGCAGTACACCATACACACAGATCTAGTTGCTTGCATATTAC
TATATAGATATCTGTTTCTTCAGGCAGCTTTGCAGTGAATGATTTCTTGCCATTCCTGTA
CTTTTATGTTTTGTGCTGGTGTGTCAAACTATAGAGATCAGCCTAGTGCCGTCACATGTT
TTAGTCCCAATGTATGATTAGTTAGGTGAGATGTGGTTGTGTACTTTTAATTATGAAGTG
TCATGCATGCAGATTTTTTAAATCTGTTGCAAGTTCTTTGCTCATTTTATTCCAATGCGT
GCTCATTTTACTCTGTTGTAAAATACTACTCCCTCCGTTCCTAAATGTAAGTCTTTGAAA
AGATTTCACTAGAAGACTACATATGGATGTATATAGACATACTTTAGAATGTACATTCAT
TCATTTTACTCCGTATGTAGTCACTTAGTGAAATCTCTAAAAAGACATATATTTAGGAAC
GGATGGAGTATGAAGTTTGTTGTTAGAACTTAATCTCGTATATCTCTTCCAATCTACTTT
GTGCTCTAATTTTTCTGAGCCATCAATCAGAAGTCCTAATGGAGTGGGTCTGTTACATAC
TACCTAAACTGGATTGCTTATTTGCCAGTTATTTAGCTCTATTTGTTTATAAGAAAGCCT
AATCGTTGAAGGTTACTGCTTTATTGAGCATGAGATGATGTTACCTGATAACGATGACAT
TAACTGCAGTAAACAGTTAAAGCCAGGTGTCATTTTGTTGGACATGGTTAAAGTGACCAG
AAGCTAATGGCGATTGATTCTCTTATCTTGAAAGTTGAATGTGATGTTCATGAACTGCGA
AGGTTATCTGCTATTGTGTTTTGACTAGTTCTGCTACTTCCACAGGATGACTTAACAACC
ACTCTTGTGCAACAATGCTACCAATCTCAACATACTATCCAGAGATTCATCGAGACGGCT
GGAGACAACGAGGCCTTGCTCTTTGAGGCCTTGAGTGTGAACGATGAGGTACAGAAAGTG
CTATCCAAATACGAAGAGATGAAGAAGCCCATGGCATCTGCGCGTACAGAACAGCCAGTG
GTCATACCAATTGCCACGGAGCATGAAGATTCCGTGACTGTTGGCAACGAGGATGCCCTG
GTCAGAAAACCAGCTGCTGCTCGAGCAATGTCAGGCGGCGATGATGATATCCTCGATGAT
CTTGATGAGATGATATTTGGCAAGAAGGGAGGAAGCAGTTCCCAGGACGTGTCCAAAAGG
CAGGACCCAAAGAAAGATGACCTAATCAACTTCTAAATACCGTCTCAGCAGGTTGGGAAG
TTCCTCTAGGGATGCGCAACATGTCTGCTGCTTTTATACTGCTGAACGATGTCTGTATTC
ATCCGGTAGAAGACTGCACTGCACGTACATTCAGTTAGGGATTGGGTCGCTTGTTTATTT
GCATACGATGATACTTTGTCCTCCAGAGCTTGTTCAGTTGATAAGTTGCTGCAAACTTCT
CATCTTCCTGTTTCATGGTTATATGCGTTAGATGATGAATTTTTTTATTTCTCATGGAAT
GAATAGCTCTTGTTCCGTCGTCGTCCGTAGTCATTCGCTTTTCTGTCTGGTCACTCAGGC
GATTGCTTGTCGAATGCTGTTTGATTTACGGGAATGTTATCTGGCGACCATCCTCAGGAG
GAAATCCCCATTAACCCCCTCATAGCCACATGATTAAGATTTGATGGTGACAGTTTGGTA
TGAAAAATGCACTAAAATAAACGAAACGTCCTGGTTTCTGTCAAAAATGCCATTACCAAA
CACTAAAACTGCCAGGTCAATGGCTATTGCAGTCCTTAATTTAAGCTTTGGACCAAACAA
GATGAGATTGAAATGAACCAATCCTGATTAACATCATCATGAACCCAATACATGGTACTC
AATGGACAGAGTATAGCATACAAAAACATGGTATAGACAAAACTTTCATCCTCCATGCCT
CACTGACAGGCACAATCTTCCAAATGACGAAAAAGGCGAAACATATATATATCTTGGAAT
TGCCGTCCGTCCAAAAATGATTAGGACGTAATCCCTCAAAAAACGTCTTACATTTTGGCA
TGGAGGTTGCAGTGGTTGTTGTTCGATGTTCAGACAGTGACGAGTTTGGCTCTGAGCTCT
TTCCTCAGTATCTTCCCCGACGCCGACTTGGGGATCGCGTGGGTGAAGTACACCTTGTGC
AGCCTCTTGTAGAACACCACCTGAAAATTGGGAAACCGTGGTCAGGGATGGCCGGTCGAA
TTCATCAACCAAGGCTCCGTCGTTGCTCGCGTGTGTAACTAGTGTAGTATTACCTGCTTG
GATACGAACTCCTTGATGGCCTCCTCGGCGATGTCAGAATCGGCGGCGCGCACCACGAAC
GCCACCGGGACCTCACCGGCGGCGTCATCCTTTCGCCTGCCATTTTATTTGCACGCACCC
GGTTACTAATAATTACCCCCACCAGTTCGATCTTTGTTCGCGACGCTGAACAAGTGATGT
TGTACTACTGCTTGAAGATATGACCGAGATGGCGGTTGTCTTTGTCTTACGGGACGACGG
CGGCGTCGGCGATGGAGGGATGCGCGATGAGCAGAGCCTCCAGCTCGGCCGGCGGCACCT
GGAAGCCCTTGAACTTGATGAGCTCCTTGACGCGGTCGACGATGAAGACCTCGTCGTCGT
CGTCGACGTAGCCGATGTCGCCGGTGTGGAGCCACCCCTCGACGTCGATGGTCGCGGCGG
TGGCCACGGGGTCGTCCAGGTAGCCTTTCATGATCTGCGGGCCGCGGATGCAGATCTCGC
CGGGGAGGTTGCGGGCGAGGGACAGGCCCGTGTCCGGGTCGACCACCTTGAGCTCCGCGT
TGCGCACCACCGTGCCGCACGACCCGGACTTGGCCGGCGTTGGCTCCCTGGCGAACGCCG
GGCACATGGACAGCACCGGCCCCGCCTCCGTCATCCCGTACCCCTGCGACACCCAGCCTC
ACGTGTCAGCACCCAACCCTCACGCGCACCACGCGACGCACGCGCCGGGACCATCGTGGT
TAGGTGCGGCGAGCGGCTCGCGTAGATCAGCTGAGCAACGAACGTTCCGTCGACGCATGT
GCATGCGCATGCCTAGCACGCAAGGACAGTGGTGCCGCACGTCCGCGCGTGGGTCTGGTG
GGGTGTGTGGCGTTGGCTATAGCCTTACAGGCCATGACAAAAACGGGCAAAGGGACATGG
TGGACGGACTGGTACATGTCGCTCTACAACTACGAGACGACAGCGACCTGTGTTAGTTGC
ATTTTTATCTACTTTCGTCAGATTCAGTTGAAATGTGGTAATAAAAAAGATGTTCCTACC
CCAATTCAAGATCGTCTACGATGCAGACACCAACACGTGCCAGTACGTGTGCTAACGAAG
CAGGGGTGTCACGCGGCAGATACGTACGCACCTGTCCGAAGATGGCCTGCGGCAGGCGGC
CACGTAGCGCGTCCTCGAGCTCCTTGCCGAGCGGCGCGGCGCCGGAGAGCACGATCCGGA
TGGAGCTCAGGTCGTGCTCCTCCACGACCGGGTTCTTGGCCAGCGCCAGCACCAGCGGCG
GCACCACGGCGGCCACCGTCACGCGCCACCGCTCGATGCCCGCCAGCATGGCGCCCATCT
CGAACCTGGGCATCAGCATCACCGCCGCGCCGGCGCGCACCGCGCACAGCAGCACCGAGT
TGAGCGAGAAGATGTGGAACAGCGGCAGCACGCAGAGCGCCACGTCCCCCTCCCGCATGT
ACAGGTTCGGGTTCTCGCCGTCCACCTGCTGCGCCACGCTCGATACCAGGCCCCCGTGCG
TCAGCACCACGCCCTTGGGCAGCCCCGTCGTGCCCGACGAGTAGGGCAGCGCCACGGCGT
CCTCCGCCGCGATGCGCACCTCCGGGACCGAGCCCTCGTCGGCGGACGCGAGGATGCCCC
AGAAGGGCAGGCAGCCGTCCGGGGTACCCGCCTCGTCGTCGACGGTGATCACCGCGAGCG
TGTCCTCGCCGCCGCCCGTGGCGATCCTCGGGAAGCTCTCGTGCCGGAGCTTGTCGACGT
AGGCGGACTGGGTGACGATCACCTTGGCGCCGGAGGCGACGAACTGCTTGTGGATCTCCT
GCGGGGTGCAGAACGGGTTGGCCGCCGTGCTGATGGCGCCGAGGAAGGACGCGCCGAAGA
AGGCGACGGCGAACTCCACGCAGTTCTGCAGCAGGATCATGACGCGGTCGCCGTGGCCGA
CGCCGAGGCGGTGCAGCGCAGCGGCGGCCTTGCGGCAGAGCGCATGCGTCTCGGCGAACG
TGTAGGTCCTCCCCGTGGCCGCGGCGATGAGGCACGGCGCGTCCGGGACCTCGGCCGCCT
TGGCGAAGCAGTACTCGTGCAGGGGCAGGTGGTTCGGGATGTCGATGTCCGGAAGCTTGG
ACCGGAAGATCGTCTCCTCCGGCACCACCGCCGAGACCGCGTCGGCGGCGACAGCCTGCG
GCTGCTGCACCTCCGGTGCCGCCACCTTGATCATGATCCTCGGTTATACGAGAGACAGAG
AGCTCCCCGGAATGGCCAAGGAGCAGAGCCTGTATACTAAACAAACAAGTGAGCCGTGAG
AGTCGGAGGAGAGAGAGGTGGCGCGATTAAATACAGTGTCGGGCGGGCGACGAGCGGAGG
TACAGGCGGGATGAGGGAGGGTAGGTAGGGCAGTAGAAGACGGAAGGGGGAAGGTGTGGA
AGAGGCGCGAACACGCTGGCCGCCACGCACTCCGCCGACCCACCTTTCAAAACTGCGTGT
GCGTTTCCGTTTCCCTTTCAGAAAACGATTTCGATAAAACACATCTAAATATGGTGTGAT
ATAAATGTTACATATTTAAATCCTATATGATCAAGCTTAGATTAAAGTTCATGTGAATAA
TTTTTTACCATTTTTGCTTGACTTAATTATTTATACGTGCAATAACTATATCACATCTAG
ACGTGTTTCAGACACACCCGATAAAATAAAACGCAAATCCAATGCTGTTTCATGATACCT
TTGCTTTCTCTTCAGATCAGTACATCGAGGCTTTCTTCTAACTGAACAAAATGCATCGTT
TTGGCCTTTCGGGGATATATATACATTGATCTGTTTGTATCTCCCGCAGATGTGTGAAAT
ATTTGTCGAGGATAACAGGATGCTGACCCACATTTACATTGAACACTATCTGTTTCCTGC
AGATGAAACTGTAAAAGATCCGATCACTAGGCAGTGCACCGCTCGGATGCTACATAGATG
TATGGTGATTTGGGAGTATTAAATACGGCAGAAGCATTTGAGCTCGAGGGAGTGGTTTAC
GACCAAGGGTCTTGCCCTGAAATCAGTCAAGGCCAATACAAGTTATATTTGAGATATGGC
GCCTCGGCAGCCAAACCGGCCGGCCCATCCGAAATCTGAATTACACGGGTTTATCGATAT
CTCTTATATTTAATTTAAATATAAAATAGATATAAGAAAAGATCGGACGCGTCCGTCGCG
TCGTCTGATCCAGGCTGGCTCACCCGACTTCATGAATATTCCCATCTGGCAAACCTGCTA
CTTATAAATTGTGTTGGAGTTTTTTTCAAAGAGGAAAAGAGATGCAACACAGTAGAAATA
AATATTTCCTTCAATAAGAATTAAGGTTATCAAATCAATAGAAGAACCATGCAAACTCTT
GTCATCAACACCTACACATAGAGAACCAAATACTTGCACCAACGCAGGCAAAAGGGTTGT
CAAGCACGTTGAACTGTTACTTATAAGGATTAAATCGTGATAGGTAGATAATATAAATAT
AAAATAAAATGACACAAGATAAATGGCAGCAATATTTTTAGGGTTTTAGTATTGGGCAAT
TGATAGAATAACACATAGTTATGAAATATTTATCCACGAAAATGATCATGTATATAAACA
TCACATCCATAAGGAAGTAGACCGACTCATGTCTGCATCTACTCCTATCACTTCCCTCAT
CGACCGCTATCGAGCATGTATCTAGAGTATTAAGTATGAAACAAAGTAATACTTGGGGCA
AGATAACATGACACAGACAAAGTAAACTCAAGCAATATGAATAAATCTCATCATTTTATC
CTTAATGACAACAATACAAATATGTGGCATGTCCCTTTCTGTCACTGGGATTGAGCACTG
CAAGATTGAACCCATCACAACACACCACTCCTAGTGAAGATAAATCAATCTAGTTGTCCA
AACCAAATCGATCGATCGAAGATAAATACGAAGCTATAATAATCATGCTTAAAAGAATTC
AGAAAAGACTCAACTAATATTCATGAACAATCTGATCATAAACCCATAATTCATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTACATCGAATAGATCACCGTGAGAATCGCGGTGAA
CTTTGTATTGAAGGCTATTGAGAGAGATAGCCATCTAGGTACTAGCTATGGTCCCGTAGG
TCTGTGATAAACTACTCACACAACACCATGGGAGCATCAAGGTTGATGTAGAGGCCCTCC
GTGACTGACCCCCCTCTGGGAGGGCACCGGAACAGGGATTCAGATGGGATCACGGCGGAA
CAGAGACTTGTGACGACGGAAAAAGTATTTGGGGGACTCCCTAGTGTTTTCTCGATTTTA
AAGAATTTATATAGTCGGAGTTAGGTATGGAGGAGCCATGAGGCGAGCCCAAGGCATCAG
GGTGCGCCTACCCCCTGGGGCGCGCCCTGTTGCCTTGGCACCGCCTCGTGTGGCCTCCTG
TTAGAGCATATTTATCCATATNNNNTTTTGGTAATTGATGACAATCCTTATCGTAATAAC
TTCGT