morexGenes - Barley RNA-seq Database

Contig contig_42926
Source Contig contig_42926
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42926 (8349 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_42926

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58724	1	411 bp	MLOC_58724.1	Available	Available	None
MLOC_58725	3	1873 bp	MLOC_58725.1	Available	Available	LOC_Os01g54210.1, FRAME:-3, EVALUE:4e-126, 13101.m05692 protein GATA zinc finger domain containing protein, expressed
CDS Structure of MLOC_58724

CDS Structure of MLOC_58725

Contig Sequence (8349 bp)

>contig_42926 8349 assembly3_WGSMorex_rbca.fasta
GGAGATGAGAAAGCTTAAGTAGTGTGACTCGAACATTTTATCGAACACCTCATGTGCATG
CATAGAAGGGTGGCAAAGAGCATGACAAACACACCTCAACAGCCAAAAAACATAGAAGAG
GGTGGACAGGGGCGAGGATATATATAGGCAAAATTTTAGTCCCGGTTTTTTATAAAACTG
AGACTAATAGCCTACCATTTAGTCCCGAATTTTGCCCCGAACCGGGACTAACGCTCCGCG
ACACGCCACGTGGCAATCGCTGGATCTTTAGTCTCGGTTTTTGCCTTGAACCGGGACTAA
TGAGATGAACCGAGCCGGGATCAGTGCCCTGGCAAACTGAACCGGGACCAATGTCTGACA
TTGGTCTCGGTTTTACTTTGACCCGAGACTAATGTGGTTTTGTGCTTCGGCTGAAAGCTT
TTTTTTACCAGTGAAGCAATACAATGAGCTTCTCGTATTACGTGCAGTTTTATGTAACAA
TACGTTGAATCTTTGTGGAAGCGGAAAGGGGCTGCGGAATGCGCATGCTGCTTCGCGAAG
TTAACGAGTAGCCACCAGCTGTGAGTGTGAAGTAACGCGACACCAGCGGACCAGCAGAGG
ACTGCAGATAACGGTTCCTCTTCATCGATCGTGATGAAACAGAAGGCAATGGGAGCACGT
CACACACCTTGGCCGGAAACCAGGAGAAGTGTCTGTTGCTACATGCCTTGCTAGGCGGCG
TGAGGCTTTACAATTACATATAGAGCCTCTTTTTTTGGGGTCAAATTTACATATAGAGCC
TTTGTTCTTCTCCGAAGCAAAGCAAAGCGCACGTACGTGTCGTTTCGTCTGCTGTCGTGT
CGAGGAGTCCCTAAGAAGCATCAATTCCTTCTCCTCTCGAAAAAGGGAATCGCTCCATCA
CCCACCTTTGCTTTCAGAAAGAGCGAGCTATGCAGCGCCAGCAGTATATACCATCGTACG
CAGCTGCAATCCTCTGAACTGTTTCGAGTTTTGACCAACCGTACGTACGTAGTGGAGTAC
CCAAAAACAACAGCAAGCAGGCAGGCAGCAACTAGATCGAAGAGGATCGAGGTAATTACA
GCAATCAATCAAGGTGAAGGTGGCAAGAAACTGGCAATGCATAGCTCATAGCTAGCTAAG
CCGATTCGCCGGTGCTTGCCTGGCTGCCTGGGGTGCCGGGCAAGGCAACCGTCCGCATCT
GCCTGCCGCCTGCCTTGGCACCGCCGCGGCTCCACCCAAAAGCCGGCCCCGCCGGGGGGG
TGCAGGCAGGGTGGGTGCTCTCACGCACGCGCACGTGGCCGCACGTGCCCGGAGTCGTGA
GCCGCACTGTTCTGCTCGCCTCACTCGCCGGCGACCAAGGCAAGAAGAGGTAGTAGAGGG
GTAGCAGCTACCTGCATGCACGGGCGGGGCCAGCACGTTACCACCCCAGCAAAAGCCCAC
GGCAACTGCTTTACCTCTGATCAATTAATTCCGCAATCCATTGCTGACATTCTAAAAAAA
AAGCCCACGGCAACGCTCGCCACCCCGGCCGGCCACGGCGCATGCATGCATGTGAGCTCC
GGGTCGACTCGACTCGACTCGACACCCCCCACTACGCTCGCCCGGTCCGCACGCCCCTCC
GGCTTAATTAACTCGCAACGAATCTGTGCTCCTTGATCCCTCCACTCCATCCATCTCGCT
CTCATCAGTTTCGCTGACGATCTGTATATTGTATGTCGAGGCTAGAGGAGAGGGAGGACG
CCGTGGCATTGACCGCACAAGCTGCCAGCGCGTACCACGTCAGTACGTACGTACGTGCAG
GAGATGCGCGCGTGAGCCCGGCTTTGATCCCTGCAATCCTGTCTGTCCTCCAATGTACTA
CCAGTACAAGCCGAGGAGCTAGCAGACAGGAGCATTGTGCAATGCCTGCCGGCGGTTTGC
TAGCAAAATCGCCGCGCACCGTCGTCGCTGCCGGTGGCCGAGGCGCAGGCGGCAGCCGTT
GGTGCTACCGAGGCCCGGGGGTACACTCATGCTCCGGCGCCAGGGGCATATTCAGGGGGT
GGTAAATTTCTGTCAACTCGTATTGACGCGGCAGTAGCGTAATCACATCACCCGATGGCC
GATGGCATATAAGTAGAATTGTCCGTTCCATCTGGATCACCAACGCCTGACTGCGTGCCT
GGGATCACGAGGACGCCCTGACCGACGCAGATATTGTACTAGCACTCCGCGCCGCGCCCC
CGTCAGGATTTCAGAGGCTCTCTCCGTCCCGCTCGTAGCAGCTCGAGTATTCTACTCTAT
CTAATATCTATCTCGGGCTTCTCTATTGCCACCCCCATGTGAGCCACGGAGCGCCTCCGC
GCGTCGCCGGGCGCCCTGCCGCCCCGATCTCGCCGTTTTATTATATGCCCCTCCACTTGT
CGCCGGCTGGTGGTGCTGAGCGGTGAGCGCCTGCATGCCCTCGAGCTTCCACTGCCGGCC
AATTTTACCCTCTCCAACGGAGCTGCACTTATTGTTCATTGTCCATATGCGTACGGGGCC
GGTAAAACGCACGCCGTAACTCGACGTTGTCCAGGGCCGGCCGGTGGTGACCGTGCTCTA
TAACTATAAGCATGCTACTACGGACAAACGAGCGCATACGCCAGTGTGGCTGGCGTACGG
TGTTCCTGGCGTTGTGCTGCACTCCTGACTTCCGACGACAGTCAGTGTTAGTTACGGCGA
GGTAAAACGAAGCTTCAGTAGGCCACTTGGCAATGGCAAATCCAGGCAAGCAGGTTGCTT
GCAGCGATGGGGGGGGGTCTGAATTTGCTTATCCACGGAAAGGTGGTGCCCCGCGCGAGG
TGCAGCCTGCAGCAGCGCAATGATGAACCCACCACCAGGCAAGCCAGGACCAAAGGAGGA
CGGTCTGATTGGATCCAACGACTGAGAGGGCATCTTTTTTTCACGCGAGATTTTTCTAAC
CTAATCATCACGTGCGAGCTCCGACGGACGGACGAACGGACGGAGTGATGGTGGGTGGGC
AATGGCACTCTCGCCTCCTCCTCCTTGTGGTAACTTTGCTCGAGTTCGGTTGCGCACACA
ACATCCGTGACATGCATGAGTGCACGCATGGCTGCTGCAATGGAGTAGTGCATGCCACAA
TGGGAGCTGTCTCGAAAATTTGGCCAAAAAGCTTGTTTTCATATTCTAGATAGGTCCAGA
GAAAGAAGCAAAAGTCGAAATGAAAAGTATTGTGGTATTACAAAATGCTAGTAGTATGAA
ATGGAAAAATTCAACTCCCTAGGATTAGTTTCTGAGGGGTAATTAGGGGTGAACTCATCA
AGCGGGAAACTTGGGAGGATCGTAAACTAATCGGACACGAGAATTTCGAGCTGAACAAAA
AAAAGCACACGGGCTAACAAAACGGTGGAGAGAAATCTGGGAAAATAACTCCTAAGCAAA
CATTTGCAGTTCTTCCGATATTTCCGGCCGGTTCTTGGGGTTTTAGCTGCTTTTTTCATT
ATTCCTGGGCTAAACTGATCAGTTCTAACTGACTGACGACTCGTCTAGATGAGCTGCTGC
CGGTAGTCCGTCGTCCCTAGGCGGTGGTGGATCAAGAAGTCGTCGCCTCCGCCGATGATG
GGCGGCGCCGCCGGCCCGTCGAACAGCAGGTGGCTCTCCATGTGCATTATCCTCCCGACG
CCGCCGGGGACCACGTGCTGCTGCAGGTGCTGCGACGGCTGGTGGTGCATCTCCCTCTGC
CGGCGGAGCTCCAGCACCTTGCGGTGGGAGTTGGAGTGCCTCGACGTCACGAACGTCGGG
CTCGCGGCGGGGCGGTACTCCGGCACCAGCCGGCCCGACTTGTACCGCACCCCGCACGCG
TTGCACAGCGTCTTGGGGCCCAAGGGCCCCGTCCTCCACTGCGGCGTCTTGTCCGTCTCG
CAGTGCAGGCACCGCCGACCTTCGTTGGCGGCCGCCGTGACGCCCGAGGGCGCTGTGGGC
GAGCTCACGGTCACTGGCTGAGCCTGCGGCGGCACCTCCTTCTTCTTGGCCGGCTTGGAA
GGCTTCTTGACGTGGAACGCCTGAGCCGAGACGCCAGACTCCGCCGGCGAGATGGCCATG
GACGCCGGGGACGGCGGAGAGGCCGGAGCCGGCGGGAGAACGAGCAGGCGGGACGACCAG
TTGCCTGGTGCGACGCGGGAGCGCTTGCTACGGGCCTTGGCGGGGACGGGGCCCTCCGGC
AGGAACACGCCAGGCTGCGCCGTTGCACTGGCACTGGCACTGGCAGCAGCGGTGGTCGCT
GGAGCAGGTGGCCCGTTCGCCGTGGGAAAGCCGCCGGACGGGATGCCGGAGATGAGCTGC
AGCTTGTGCAGGTCCTCGGTGGCGAAGCTCTCCTCGCCCTCGCCCATGTAGTTGGACAGC
CATTCCAGCTCCGCCAGTTGATCGTACTGCGCACAATTCACATCAAGTTTAGCAACATCA
ACAGCTCATGCATGCATGTTCATTTCGAGAAGGAACGCTATAATTCAGCTAAAATCTTGG
AAAGCCACTCGAGTTCTTGGGCGCATATGGAAGCGTCCAGCTAGCGCTGAACGGGAAAGC
TGCTTGCTATTTTTGGTGCTGCGCGGTGCCATTTACGCGTGGCAGCTGTTTGCCATTTCG
GTTACTCTCTCTGCGAGGAAAAAAAACTGCATTTATGCGTAATTGTGGAGGATATTTCTG
GAGCGGTTTAATTGCAGAATATATATCTACTTGTAAAATCGTCTTAAATACTATCCGTGC
GTGTAGGCATTTTCCGTGGAATTCCCTCGTGTAAATGAAACGAATTGAGTTAAGGACGGA
AAAAACGTAAAGTCGCTCACTTAATTAGCGGAGAAGAATTGAGACGAACAATTGATTGAT
GATGCGAAAAAAAGGAGCGGAAGGACGGAGAATCTACCGGCTCGCAGAGGCCGCCGGAGA
AGTCGCCGTCGGCGAGGCCGGAGAAGGAGTTGCTGCAGCTGTCGAGGGCCGTGACGGTAG
ACGAGTCGGCCGACGCGTTCCCGAACCCTGCGGCCTCCTGCTTGACGACGGCGGTGGCGG
CGGGCAGGAAGGGCGGCGCCTCCTCGTCCTCCTCGTCGTCGTCGCACGGCAGCGCGAGGA
GGTCGTCGACGACGAAGAGGTCGGGGCCCTTCTTGTTGTCGCGGCCGTAGTAGCCGTGCG
CGTCGCAGTCGGGCGCCGTCGCCGTCGCCTCCATGGCCGCCGCACAACGCGCGGGGGAGA
GCGGTGGACGCAACAAACGATTCTATCTGCCTGCGTTACTCGGCGCTTTTTTTGTTTCGT
TTTGTACGCGTGCTGCGCGAGGGAAGAGGGAGCGCAGATAACGCAAGGGACGGGGCGAGA
GGAGTGCTGGTAGCGGTAGCAGTAGGGTTTAATTGGCGTGGAGATGCAGTAGGAGGAGGA
GGAGGGGAGGTCAGCTCAAGGGAACGATTCTTAAGGAGTAAATAAAGCGGGGAGCTGCGA
GAGCCACTGACTCACTGAGGCACCGCCGAGGCCCCACCCTCCGGCCCCGACCCCGGCCTA
GCGACTAGTGAAAGCCACAGCCGGTTATTATTTATCTCACCAGTAAAACTTCTTATCCGA
TTCGAGAGTTACTTACTTATAGAGGCTGCTTGGTTACACGGACTTATCAGGGACTTAGAA
CTTATAAATTCCTTTAAGTCCATCTAAACCAAACAGAAGAAATTTATAGGTATTTAAAAT
GAATATTTAAAACTTATGAAATAAGACCCTCAAGGAGGAACTTAGGCCGTGTTTGGTTCA
TAAGTCCCAGGACTTTCTTTAGTTCCAACTTATAAGTCCTAAGTTCAAGTTTCTATCTGT
TTGGTTTTTAGGACTTAACATGGACTAAAAGACTATATTACAACTATAAGTCCCTATAAG
GCTTTCTTTGAGAGTCTTATTTCATAAGTCTCAAATGCCCACTTTAAGTCCCTATAAGTC
CCTCCTGTTTGATTTAGATNGGGCTTAAAGGGACTTATAAGTTCTAAGTCCCTAATAAGT
CCCTGTAACCAAACACCCCCTTATAGTTGTAATATGGTCTTTTATTTCATGTTAAGTCCT
AGGAACCAAACAGGTAGGAACTTTTTAGAGACTTAGGACTTATAACTTGGGACTAAAAAA
GTCCTAGGACTTATGAACCAAACAGGGCCATAGTAGTACGATTCATCCCAAGCTATTTTA
CTAGTACGATTTATCCTCGCCTCCGCCAAGTATATTCTTTGCTGCGTGCGCGTGTCGTGC
GAGGCGCCTACTCACTCGAGGGCACTCGAATTCCCTCCCACGCAGGTGGATTTTATGGGG
GTGCCGTCACGTGATGGCAATTCTCGTTACGTGATGGTAATTCCCATTAGGATATTTATA
AAGGCATGCATAATGGTTGATAAGATATTTTTATCTGAAATCTTGCACGTAATTTAGAGA
TAATTAAAAAAAGTCTATAATGGATCATTTTTAGCCTTATCTTTTATAATTAGTTATTCT
TAAAAACATGGTGAGACATATTGTGCTAAAAGATCACCTCTTGTCTTATCTTAAATAAGA
TAAGGCAAAAACCTTTTTTCGTGTTCTCTCCTCCACCTCATCATTTATCCTATGTAGCAC
TCCTAAGATAGCATGATTGTACATGCCCTAATGATGGCATATAGATACACATGCCTCATG
ATATAGAATAGTTTCATGCATCTGTATTCATATTTTTCTTCAATGCAAGTTATCATTAGG
ATGCTTCATCAAAAAATAAAAAATGAAAACACTAATGCACATGCATCTTTACTTTCTACT
CTAACTGTTTTAGCTTTTTACATCGGACCACACCTTTTTTTCTTCAAGCACTCGCCTCCT
GCAGAGGATCCCGTTTTCTTACCCGAACCTACTTTTTCTAACATCCGATCCTACATGGCA
TACGGGGCATCATCTTGAGACTATGTATTGTACATGCCCTTAGTTCAAGGTTGATCGGGA
CTGTCGTTCTTTCCGCGCCCGTTTACTTGGAACCCGCTGCGAAGCTTCCATTTCTTATCG
TGCCGGGAGGGTTCACAGTTAAGAAAGAGAAGAAGTTCAAAATCATAAAACAACTCTGAC
ATACCAGCGGCAATTTTACTTGCCAACTGAACTGAACTGAACTTTTGGAAACGCATGAAG
AACTCCTCACCCCTTGCATATCACAGCGGACGGCCATGATGGTCAGAAAATCACGACCGA
GCCACACCTTGGTGCCGACACGTGCGGGCTGAACGGCACTGCTCACGCAGCTCATATCTG
GGCAGATATAGGAAGTTCCGGACACGTCCGTCATATCGAATTCTACACCCGACGGCACAT
ATATTCGTATCTATCCATATCCCAGACAAAATCCTAAGCACTCCACTACGGCGTGACGGG
CAGTGGATCCGACTTCGATGTCTCCCGGTTCATCGGCTCAAACATCGTCCCATGCGGTGA
CGAGGAGGATATGACCGTCCACATCGCTCTCCGCTGCCCCTCGAAGGATTGCGCCCCACT
GCAGCCGGAGTCGATCCATCGGGAATCTGTTGTGTCAGTGCAAATGGCGCTCGAATTCGC
CGGCGCTTGGGGGTCGAGGCACGTGACCGCATCCTTATCGGATACGGTGACAACATCTAG
CACCCCAACTCTGGAGTGGTGGTGCAACCCCTTCGATGTTCCCTAATTACCATTGTGTCG
AACTTTGAGTCGGAGGTCAACACCGACATACATCACGGGCCGACTGTTGCAGATGCGTGG
TATCGTTGTCAAAATCGGTAGATCTCGGGTAGGGGAAGCCGGGCTATGAGGTCGGATCAG
TGGGTAAGAAGAGACAAGGGACACGATACTTTTACCCAGGTTTGAGCTCTCTTTAAGGAG
GTAAAACCCTACGTTCCATTCTTGTTTATATTATGGGTGTATCACAGTAGAGAGTTGTTC
TACCACCAGATCGTAAGTTGTAGACCAAACCCTAGGGGTAATGGTGATGATGATGAATGA
ATGAATGAGTGCCTCTACAGACTAAACTCTCTGGCTTATATAAGCACCATGGTTATCTAA
TGTTACATATGGTTGGTTGTCATCTAGGGATTACATGCCGAATCTAATAGACATACTTGG
AGTACACGCCAAGTCCTTGATGAAGCCCGATATGCTTACGCCGCACGTTAGAGGCCTCTG
GAGTCCTTCCTCATTAACAGGCCATCAGTCCGGTTCACGGACTACGCCGGCTAGGCCGGG
ACCCCCTGATACGTCTCCAACGTATCTACTGTTCCAAACTCTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTAACCTGGACTGACGCTGTTATCAGCAGAATTGC
CTTGGTGTT