Contig Data
morexGenes
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Map Locations of contig_42895 (6164 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42895

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58692 1 387 bp MLOC_58692.1 Available Available None
MLOC_58693 4 1783 bp MLOC_58693.2 Available Available LOC_Os01g61330.1, FRAME:-1, EVALUE:6e-170, 13101.m06526 protein ankyrin homolog precursor, putative, expressed





CDS Structure of MLOC_58692






CDS Structure of MLOC_58693






Contig Sequence (6164 bp)

>contig_42895 6164 assembly3_WGSMorex_rbca.fasta
GGAGGAGGAGGGCGACGAGGAGGCGGGGGAGGACCGGGCCCAGCAGGCGGCGGCGACGCA
TCAGCATCGCCGTAGGGGAGCGGTCGGATTAAATAAGGGGGGGTTTCATAAAAATTAAAA
AACGGTTTGATCCGATTTACAGAAGGACTACAGGTTAATTACCTGAAACGACATGGACCT
TTTTACAAAAATGTCACGACGAATGACCAGAAACCCTATTTGCTTTATTATTAATATATA
TAAAGAGAGAAATGACATGTGGGAGTTGGATGAAACTTTGTTAATTCTCATCTAGATGAG
AATTAGCAATTCCGTTCAAAAAAGAACTGCCACAGAAAAGAGAAAAATACAGTAATCACT
TGATATCACCTATACAGTGCAGTATTAACATGGTCTTTACAATCAAATACTCTGAATCGA
AGACGCAAACAAGGTCTTATGCGCAGGATATCGACGAGGAAGACGACGATGCAATGCACA
GCTGCGCGTCAGCTGCCGCCGCCGCCTCGTCGGCGCCCCGGCCGCGCAGCAGCTGCGAGA
TGTCGTCGTACCCCATGGTGTCGGCCATGTGGAGCGGCGTGGCGCCCCGCTTGGTCCGGG
CGTGGACGTCGGCGCCCATGTCGAGCAGCAGGTCCACGGCGTCGGCGCAGCCGCCCTCGA
CGGCGAGGTGCAGCGGCCGGTGCCCTTCCACGTCCTCGCACTCCACGTCCATGCACCCCG
ACCCCGCCAGCAGGGCGATGGCGTCGCAGTGGCCCTTGATCGCGGCCACGTGGAGCGCCG
TCAGCCCGTACTGGTCGCGGCCGCGGAGGCCCGTGCGCTTGGCGAGGAGGAGCTCGAGGC
TCCGGAGGTCACCTCGCCGCGCCGCCGTCATCACCAGCTCCCACCGCTGCAGCACGTCCA
CCACTTCCTTCTGTGTACGTAATCGGCAAAACGCAAAGCACCGTCGATCGTTAGTCACGT
TAATTCTTGATGCGGATTTTCTTTGGGGTGAAAGCTTTGAGTAAAGATCCGAAGAACATT
GGATGCTGTGTGTCGTTCACGAGCGCAACGACGCAAACCGCATAAGCCAAGCTACGTACT
CTACAGCACCCAGCTGGAACAACAGTTGATTCTGCCAACTCCCACTCTGTTCTGTCCGTG
ACAAAACCAGCCAAGATCTCGAAATTCACAAGTAACTTTCTTGCGACCTTCCAGTCCAAG
TAATACAACAGAAGGTTGTTTACTGCATGCGACCATGGTTGTCAGTTTGTGACTAGACTG
CCGGGAGCGTAATTTTTGTTCAATCTTAATTAAACTCTCAAGTTACTGCATGGCATGGCA
GTACAAAAGGACAGGGGATTGCCTACGTCGTGGACTGAGACTTGACGAAGTCTCAGTCAA
GTAATACAGCACGCAAAAAAAGAACTGAGAATTTTTTTTATTTGCATAAATCTTGATGCA
AAATCAACGGACTACAATATCGACTGAGACTTGACTGATTTTTAGCAAAGCCGAAAGGAC
AGAGGTATACTTACGTAGCCCTTCTCTCGCGCCACGTCCAGCGGAGTCCTCCCGCGCGCG
TCGGCCGCCGCGGAGTCGGCACCCATGTCCACCAGCTCTGCCACGGCCTCTGCTTCGCCG
GCCGCGGCCGCGACGTGCAGAGCCGTCCTGCCGTCCTTGTCGCGCACCGCGAGCGCCTCC
TGCCCCAGTCTCCTCACCTCTCCGCAGTCGCCCCGCGCCGCAGCCGCGTGCAGCGGCGCC
CACTGCTCGGCCTCCGGTACAGCCGCCTCGGGGTCGAGGACCGGTAGGAGGTGCGGCTGC
CGGCGCAGGATGAGGCGCACGGCCGCGGAGTCCCCGGCGTCGGCGGCGAGGCGGAGCAGG
TAGGGCCCGCCGAAGAACACGCGGAGGCGGATGGCGCCGCCGGGCACGGAGGCCGCTGAG
TCGAGGTGCGCGGCGGAGAGGGAGGAGAGGACGAGGAATCGGTCGGCGCGAGAGCGCGGG
AAGGACGGCGGCGCGTGCGGCTGCGGGCGGAGCACGACGCGGATGGTGGCCGAGGAGAGG
GGCTGCAGGGCGCCGCGCGGCGGGCTGACGAGGAACTTGAGCGGGGAGGAGGTCTGCACC
TTGAAGGCGACGGGGAGCGTCGGGTGCAGCGAGCGGAGGCGGAGGTCCACGCGGCACTTG
GAGCTGGGCTTGAAGTCGACGACCACCTCCTCCTCCGCCACCTCCAGGAGCTGCTGCTGC
TGCTCGGGCGCCGCCGGCGGTTTGGCTGCGTCGGCGGAACTGGCGGGAACGGAGCAGGCT
GGCTTAGCAGCGGCCATCTATCTCCGTTGGAAGCGCGCGGGGTGGTATGTGCAGGCAGCG
GAGCTGGAAGCGCGGAATGGTGTCTGTACCCGAGCATCTGGTGGCTGTACCTAGGAAGAA
AGGATGGCGCTTGCTCTTTTGCTGGCACGCTGGCTGGATCGAGCAATGAGAGGATGCTGG
CTTCTGTGACAGTGTGCCATGGTAGATTCCGGTGTGATGTACAGAGCCATGATTAATGAC
AGAGAGAGAACGTTGATATTCCAGTGGACCACGCTCTGCAATACGTAAAACCGTTTGTTT
CACACACTGCTCTGAACGTGTCCACACCGTGTCAACGTGTCAACGTAGTTTCCAATCCGA
CGGCTTCAGTTGATATGCTGCCAGAAGAGGCCACACCGTGTCCGGCAAGGCGTGCCGGCT
CGCCGGATCCCGCATGCATGCATGCATGCATGATAACCTACCTACGGGACCAGCAGAGAA
TGATGGATCCAGGTCCAGCACGAGCAAGCAAAGCGCCGAGGAGTGGCATCGCTACCGCAC
GTCCCATCAGACCGGGTGGCAAGCGAACGATCACGCCATGCAATGATGCAAAGCGCTACA
ATCCACGGTACCCCCCGTGAGGCCGTGAACCGAAGGCATCCGCCCGCCCGCGCGTCGTGC
CTCCGTCACGCGACGAGACGAGAGGATCGTTGGATTCGTCTAGGCGCCATGTGCCCTCCC
GGCTCCGTCACGCGAATCGGCGCAGAAACGAGGGCGCGATCGCGGCCGCTTCCGCTGCTA
CGTGAGCGGCCCCGGGCACCGCATCCCACGTCTCCGTGCAGCTCGGCGTCCAGATGCTCG
GGCAACAGGACAGGAGTGCTTGCTGCCGCTACCAAACGAAACGGTTCTGCTTCACCGGCT
TTATACTACAGTACTGTATTACGCGACGCGCCGTACCTCCGTCGTCCGGTACTCATGCTC
ATGCGTCTACAGTACATATCAGTTCTGTGAGACTGTGACTGAGACGCTCGCGCACCGTAC
CGATTCAGCTACACACCACGCTTGCAATATATACTAAATATAAGTCTTTTTAAAGATTTT
TTTATTAAAAACTATATATAAAATAAAATAAATAAATTTATACTTTAAAGTATGTCTATA
CATATTCGTATATAGTCCATAATGAAAACCTCTAAAAAGACTTGTAAGAATGGAGGAAGT
CAAACATCTCTTTATATAAGTCTTTCTAAAAATTTCATTAAAGACTACATACGAAGTGAA
ATGAGTAAATTTACTTTCTAAAATACGTCTATATACATTCGTATGTACTCCGTAGTATGT
AATGAAACCTCTGAAAAAACTTATATTTAGCTATGGGGGAGTAAAACATTTCTTTTGCAG
ATTGAATGCAAAAGGTCTCCTCTCCTGCTCTATAATTCTATATGGTGAATGCACTAGCTA
GTGATATCTTATGGTGACCGAATAGTTTGCATACGCCTTGTTTTAAATTTTGTCATGTAA
GCGTCTGTAGTCCAACGGTCAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
CCGGCAGACGCATCTTCTTTTTTACAAGCCTGCCGGGCCACTTTTTATCTGCAGGGGCAG
TCACTTGCTTCTGCAGTTCAGTAACTCAAAACATTTTGTGGACAACGAATGCAAAAGGTT
TCCTGCTTGCAGGATCAATCAGATTGATGCATTGATGGTCACTGCACTAAACACTGGCTA
GTGGCATCTTTGCACATTTCGTTGAGATACTATGCCATCTTCGTTTACTGGTATGTTTAA
ATTCAAACAACATAGCGTCTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGA
CCCGGGTTCGACTCCCGGCAGACGCATTTTTTGTGCAACTATTTTTGTCATGATCTGGAA
TTAGGCTCAAATGTTACTTTCTCCCTTATGACTTCACATTTGCATTAATCCGAAATTAGA
TTATTATAAGGTGATGGTATCCTTTTGTAGAGGCGTTTGATTCTCATTAATTTATGTTTT
AATTACAAGTAATAGTGGGCACTGTAAATCCGAACCAAACCGTATTAACCGATTTTAAGG
ATGGGAAATTTTAAGGTTTTTTGGTGTTTTGTTATTGTTCAGTTTTCAGTGCCTCGAATG
TTTACTAGTTTGCTAGACCGAATAAACCATAGAATGATATTAATGTTGCTAGATCTTGTG
ATTATTTTTGGCATATTATACAATCCAAACCAATGCTCTTCAGTCAAATACTTATATTAA
CACAATCCAAATCAATGCTCTTCAGTCATTATACTTATATTGACAAGTGCATGAATTTTA
TTTTTTTCAGTTAACCGAACAAACAGAACCAATATATTATGATTAATATGATTCAGTTTT
AAATTTTGAGTGGTTATTTCGGTTTCTATTTCTTCAAAACCAAAATTATAAAGAACCGAA
TAAATCAAGCTGTATTAACCTTATAAACCGAACGACCAGCCCTAATTACAAGTCTCATGT
TGTGAGAGCATTTTTAACGCAAGTTCACCTATCCAACGAATCATCATCGAACTACTGCAC
ATTACATTTGTGCTCCACATACGATGGACAATACAATCCAACATATAGTGCTTCTTCCAT
AGTGCATAGTGGACACGGTTGTTCTGACCTAGGGATCATGTGAGCTCAGGTGAACTGTAA
ATAAAAAAATAAAAATAAATTAATAAAATTCTGTTTTTTTTGTACCAAACACTGAGAAAT
ATTTTCAATTGCTAGCAGAGTTCCGTCATTCGTCCGTCATCGAATGACGTTAATGAAAAC
GTGGTAAAATATACAAAACCAATGCTCCAAAATGCTTTTGAAAGTAACATTTTTTATGAT
CGGTTACATGTTCTAGTTGAATTTTAATCATTTCACCAAGTTAAAAGCATGGATGCATTA
ATAATTACAGTTAGCACTAAAATATAAACTAATGTATAACATTTTTTCTTCTAGACAACA
TTTAGCATTGCATAAGAAACACCGCCTTATGCACCACTCCACATAGTACATATTGTCATA
AATGCAAAATGTCCTTTCACGAAAATACAACTGAATACTTCATGGCGCTCAAATCATGAG
GTTCCTTGTTGATTGTGGCTCAGATTCGAATCACATGTGCAAGGAGACATTTCTCTTTTT
TTAGATCAACAATTGAACGATATAGTTTTATTTAAATGATATTTGTGGGGATACGGGCTA
TAGGTGGGGGAAGGCAAGCCAAACATGGCGCCCACTCTTGAGAGGAGTAGCAACCTTAGC
AAGGGTTAGTACACTCTCATCACTTGATGTCATCCTCCATGGATTGTATGAGATCTTTCT
TTTGACGCAATCCCATGGAAACATATCTAACCCCACACAAAACTCTCACATAGACCATGG
GTTAGTATACAAAGCGCAATGGACAATGCTTACCNNNCCATGGATCACTTGATCCCTCTC
GGTACATGCTTTGTGTGTTGGTTTCAAGGAGTTAATATGCTTTGTGTGTCGATCTACTTG
ATTCAATCTTTGACTTAGTCTTGATCGACCTTGTATCGTATCTTCTCTCTTCATAAAAAT
GATGTCTTGAAGGTAAACATGAATGCTCACACAATCTTCTTCAAGACATGCTTGCAATAA
GCTCAACTCTCTCATGACCAATCTTTAGATAAAACCTTGGATACCACCTTGGTCACCATA
TTAACTCCTTGAAACCAACACATGGACTTTAAAAGTGCATATGGACAAATCCTTTGAATA
TAACTCAAGGCAACCATTAGTTCATAGGGGCTGTCATCAATTACCAAAACCATACATGTA
GAAATATGCTCTTACAAGTGTTGTTAGATCATATTTCTCCATAT