Map Locations of contig_42852 (10869 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_42852

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58643 1 514 bp MLOC_58643.1 Available Available LOC_Os05g04390.1, FRAME:-1, EVALUE:2e-13, 13105.m00442 protein hypothetical protein
MLOC_58644 3 3175 bp MLOC_58644.1 Available Available LOC_Os12g41860.1, FRAME:-1, EVALUE:0.0, 13112.m04378 protein START domain containing protein, expressed





CDS Structure of MLOC_58643






CDS Structure of MLOC_58644






Contig Sequence (10869 bp)

>contig_42852 10869 assembly3_WGSMorex_rbca.fasta
GTTGCTCACCTAGTTATTATTTTAGAGANNNNNNNNNNNNCTAACCCTAACTTGTTAAGA
AAAACTAAAAATTGGTAGTTGCCTATTGACCCCCCCCCTCTAGTCAACCATATCGATCCT
TTCAGCATCCAAGGAGATCAAACACAATTTCATCTACAACTACTGCACCAACAAAGAAGA
GGCAATCAACCACACCTACTGCTGCTGCTCCTCCCAGGAAGAAAGCTACTGCTGCTGCAC
CTTCTTCTGATGCACCTGCTGCTGCTACACCTAGTGCTCCTCCAAGGAAGAAAGCTATTA
TTGCTGCACCTGCAGCTACTGCACCTAGTGCTCCTCCAAGGAGGTCTCCAAGGAAGAATG
CTACCCCTGCTCCTAGTGCTCCTCCAAGGAGGGGAATATTTCAGTCTCCAAGACAAACTA
GAAGAAATAGAACTGTTTCCTACAAGATGAAAGAATATCTATATACATCTGGTAACTAGT
TGGTGCTGCCTTTGTTGGCTGTGAGTGTTGTTGAACTATTTATGTTGTTAGTGCCTTTGT
TGGCTCTGAGTGATGATGAATTATGTAAGATGTTGAACTGTGTATGCCGTTGAACTATGT
ATGATGTTGAACTATATATCTTGTTGTCCAATCTACATTAGCATATCAAGAACCATCTTC
ATCACATTCAGAGTACACTGAGCATATTTGGGAGATCGATACAATACCATTACATAACTA
ATAGGTAGCATATTTGGGAGATCCATACAATACCATTACATAACCATGATGATAGCACTA
ATAAGTGCCATATTACATCAGCCTAACTTGAGCATAACTAAGAAGTAGCATATTAGATGC
TCATTCATCTAAGATGCATTGATACCATTCAGCTTGACCTTGCTCTGTTCCACCACCTTT
TCAAGCTCACTGATCTGGATCTGCAACTTGCTCTTCTCTTCATCAAGTTTCAACTTCATG
TTCCTAACGACAGTGGCTTGAGAAACTGTCAGGTTCTTCAGCAAGTCATACTTCTCCTGC
AGTTTGATTTCATCAGTTTTCCTTGCCATATGAACCCTCTGCTCCTGGGCATCCAAGAGG
CCATTGACATCTTCAACCAACCTGTTTTTCTTTCAGTGTGTGAATAGCAAATGAGTTCAT
CAGATTGTCCTCAATCCTGTTTTTCTTTCAATCTTCATACATGTCCCACAACTTGGCCAA
TGCATTCTTTATTGTAGTCGACCAAGATGAATCAATCCATTCAACCAGACCATAGTTTTT
ATCCTCCTATAAGACAATCATATATGAGCTCTAAATTAACAACTATAAATCAGTGCCACA
ACCCTATGCACTTGAGGCAGCCACAACCATATCACTAGTAAAGAACGAACTACATATAAA
CAAATCACACCATATCCAAAGCACTAGTGGTCACTAACATATAAACAATTAACTACCAAA
GCACTAACTACTGACAAAATCAGTGCCACAAAAAGCATCAGTACCTTCTCGGGACAGGCA
AGGAACCTCCTGCCAGTAGGGGTTCCCTCGAAAGCAACATGCCTCTCTGCTGCCTTCCCA
TGCCCGTGGCAGAACACATCAATGTGAGTTTCAATTCCCGCGAAATCGGAGTCCTCCGTG
GTAGCAGGGAGCTGCATGTGCAAAGGAAAGACATAAATTGTGAAAGTGATCAGAACAAAA
TCAACAAAGAAATCCCCGAATCCTAACCCTAACCCTAGTTCAACTGACATACATGCCATC
GTCGGAAGCAGGGCTAAGGTAATGGAAGGAACTCTTGCTGCTATCCCCATCACTCTAGGA
CATCATCGCGAGGCATCGTCAGCGGTTGGAGATGTGCCAGGGGCGGCGGCGGTGGTGGCG
ACGAACAACGGAGAGGGAGAAGCAGAGAGCGAGGAGCAAGGAAGTGAGGGGTACCGATTC
CGATTCATGGGGTTAGTTCGAACTTGGTCATTGCACAGAGCGAACGAACCATCATATCAA
TATGCACTCTGAGCTATGCATATTTAATGCTCACCTACAAGCAAAACTATCCTAGCAAAA
TGCTAGCCAGGTGAAAGTTCCTTTGACTGGCAGAGGGCATGACGTCAAGGGAACCCTGAC
CTGACACAAGCAAGCCACACAGGGCACAGGGGTGGGTAGGGTACGCAAAGCAAGTTACAA
GAACCGCAAGCCACTGTTCGGTTCATCACACACACTGACTGACTGACAGTTACACACACA
CATACATAGGTCTTTCTTGTCGATCAGGAAGGAATGCCAACTATGTTTCGGTTCACGGCA
ACAAACATGCAAACCATAGGTCCATAGATAGGATGGTTACATAGATAGATAACTGAACCA
TACAAAACGAACGGCAGTTTTCAGGTCTTTTGATCAAGCAGATGGGCGAGGCGGTCACAG
GAAGGTCCAGTTGACGAACATGAAGGCAAGGCAGTGCGGCGCGCCCGCCACGTCATCACC
CACCACCTTCCACGCCACCGCCTGCTCGTATGACGCCTGCCGCCCCATGCTCGACTTGCA
CACGCCCCCGGGGAGGTACGCGAAACCCTGCATCATCAAATGGAACATCTCATTCAGTCA
TCTACTCATGTAACCAACGGAGGTGCATTGCTGCTGGTCAGTTGAAGTTACCTGCTGCAT
GACCTTGGAGAACTCGGCGCACAGCGCCTTGCGCCCCTCGTCGTCCAGGATCGCCTCCAG
CGAGATGTCCTGCAGGTTCACCAGCGTCGTCTCCAGCATGTCAAGGGCCGCGTTGTTGCC
GAAGGTGAACATCGGAGCAGGCTGCCAAAAAAAGACACCCTTGGCACGGTTAGATGGTGG
GTTTCAGGATAAGAAATTTTTTCATTCCTTTTTGGAGTAGCAGCACAGGCAAAACAACTG
ACTGAGAAAATCACCTTCAGAGAGCAGCAGAGTATGGCGTCGCTGTGGTTCCACAGGAGC
TTCAGGGGAGAATCCGCTTCTTCAGTGTCCAACCAACGGATCTCTTCTCCAGTGTGAGCC
CTGCAAGTTTTCACAACTTGAGAAACAGTGGGCAACAACAAAAGCATACATGATTTCAGG
ATAAGGCGATAAGGCCGCAACATGCCAACCCCAAGTAGAGGGTTTTATTTTACCTGTAGC
TCCTGCCAATCCAGCTAGCGAGGGTAAGCGCCTCGGGGGAGCCCGGAGGGTGCTTCAGTT
GGATCTGTGAGCCGAGGCGAGAAGGAGCTATTGCCATGGCCACCCTCTGCACGGATGCCA
TAACAGCCCTCACATACTGCCTCGCCATTGCTGCCACGCTTTCTCGGAGGTGGTTCTCAA
ATGAGAACTGGAAGGCAATGGTCAAGACCGACCTCGTGCAGCCACCGGGGGAGTCACCTG
AACCGCGCAAAGCTCCACCAGATCCAACCTCAAGGGCAGACGCAAGGTCAAGTGTGCGTG
TGGCAGATGGCACATCCTGCAGTCCAGGGTATAATCAACTAGTTAGCACTTAGTTGTGGC
ATAACGAAAACCAGATGAGCCTTAGGAATATATAGCAGCATTTTTCAAATGTACTAACCG
TCTTTGTGTCCAGAGGTATAACACGGAAGCCTGAGGGTAGCAGCGGCGCATCATCAGCAA
AAGATTCATCAATAGGTGCAAAGACAAGCTGCGCACAAGCGCCTGAAGCATTCTCATCAA
CACCGCTGCAAAGCTGGGGGGTACCAAAATAACATCATACCATCAGGACACTGGCAACTA
TATAGAACATCCTAACGAAACAGACAGGAAAACACCATACCTGCAGAAGGTACATATCTC
GTGCAAGAAGCACCTCGTCGTGGCTAAAACCATGTCCTTCCAGCCTAAGGACCTCAAGGA
ACTGCAAATAAAAAAAAATCTAGCTTGATGCACTGATACTGGCAATCCATTATGCTGAGA
GAACTGAGAAAGGGCTGAATTGACTCGTTACCTCTTCATGCTCCAGGGTGTGCGCGAGTG
GCAGTATAACCTGATTTCCCATGAACCCACCAGCTCTTAAACCTGGAACTGCGTACGGGC
TGGCCCTCAAAGAGGCAGCAGAATAAGCATCAACACCAGGATCAGCCCATTCGGAGCGAT
GCTCCCTCAGAAATCGCACAAGTAAAGCAGGAGGGACATCCTACATTATCCAGAAGTACA
CTTGGTTAAGTATGATAGGAGGAATAAATCTGGTGATGTGGAACAACCGAACAAACATAA
AGATTGTCCATGTAAAAAGAGGATCAATAAACTGAATAGGGTATCAGTAAATACCTGCAC
TAGCATTGATGCCTTTGCACACAAAATGCCACCTCCGATAGCAGAAAAGAGCGGGGAAGG
GCTGATGTGGGATCCAACAAGCTTGTTTGGTGATGAGTTTACTGTGATGGTAATATCCTC
AGCACCATCACTCGTCAACAAAGACCAACCATCATCTGGAAATCCACTCACAGCATCGTT
GAAGCCTCTGCAAAGTCAGTGTATCGAGTTTAGAGACATTGTAGACAAATGCAGATGCCT
TGAAGACCACATGGCCATTCTAATGTTACTGACCTGCTGAGCCTTTGGCTGAAGGTTCTG
AGAACTGCAGGCTGGCGTCCAGCACCGTAGGGGATTTCACCACTTGATTCATGCGCGATT
TGCCTGATGTGTCGCAGTGCCTGCACGTAAAGAGCCATTAGCATGAAGAGAAAATGATTT
GCCTGACATGTCACTCGTGAATCGATAAACTAACAAATTCAGCTTTGCTACAGAAGGCCA
ACGAATGGGGGGCAACAACCAAATGGAATGGCACACATACCGCAATAGTCATCTTCTGTG
CAACGATCTTTGGAGATTCATAGAGCGGTCTAAGGACTTCAGGCACACTCCAAGCCTATA
GATACATAGAATTTATAAGATGGATTTCTTGCAACAGTACTCAAGTGTGACACTCACTGA
TATGAAAGCCTTTGTTGTCACTTACATCCAAATCAACATGATCCACAATGTGGATCATGG
AGCCACCTCCCTCGCACGGTCGAATCAGATAACCACTAGGGAGCACCTCGGCTCTAATAA
AACCAGGAGTGTTAGGCCCAGATGGACCACCCGTGGACTGGGTCAATGACCTTTCACAGA
TCTGCAGAACAACAGCATCACACTATAAGCAACACTGTGGGGTACTTACTGCAATTGTGA
AGAAATGGCAGCAAAAGCACCATCACAAACAGAATCATTACACCAGAGTTATAAGTCACA
GTAATAATGTTCATCCAAACAGATTGAGCCCAATCAGAACATGACAAAGACCAACAACAA
TCAACAGCGACAGGAGACATGTATACTGTTTGGTAAGATCATAACAAGCAATTAAAGATC
AGTTTAATACCACAAGACTGCCATCTTCAAGGCCGCAGGTGTAGCGGAGCGTCCAGAAAT
CGCGTGGAGCCGCCAAAGTCGTCGGCGCATAAGTCTAAGAAATTGAAATGGCAATGATCA
TCACCAACAACCAATAGATCCACTAGTAAAGCAACAAACATATGAAACTGTAACTTAATT
GTGAGCAGATACACACCTGCATGTAGATTAACTCGATAGTTCCACCATTACCCGTAGGGA
AGACATGGAGGATATCAACGCAACGACAGTCGCGATACCAAGATGGACGATCCTTGAGGA
TCTCCGCAACCTAAAAACGAAGCTTGTTAGGAGCTGCCTAGTAACTGCAGAAAGAAAATA
AATAAAAGCAATGTCAATGAGCAACATCATACCTTTGTGGGCTCAAGGCTCACAAGACCG
CAAGCTCGGGCTGCTACGCCAATACAATTGTGCGAAACAGCGATGATTCCAATGGAATCC
GGACCAGGCTGCAGCCAAGTTCCAGTTTAGAGCGGTTAGAACAAACTTGGTAGAAAGCCA
GCACAACGTGCACTGCTATCATCATGTACAATGAAGGCATTACCTTCATTCCCATCATTT
GCACCCATTCGACAGCGGTTCCGGTCGCCTTGGACATGAACGCTGTCAAGGTCTCCTCAG
CGATTGCGAGAAGACTGCACAAGACAAACAGCATCTCAGCAAGACATGCCTCGACCAAAC
CCCATTTACCTAAGAAATGAGACTCGGCATTGCACTTACCCAGCTGGGTTGTTTGCATCC
CTCTGCGGACGCGGTGCTGCTAGGGCTTGCTGCTGACCACTCGTCACCACAGACTCGCAG
CTCGTGTCCGTGGTGGCCGCAGAAGCCTGCAGGGATTGCAAGAAAATGTCACCACAGGTG
AAACAAGAAAGGCAATAGCCACTGAATCCTCTGAATCAGCAACACAGCATGAAACCACAT
CAAGTACACAAGCACACATAGCATTTTAAAGGGCAGTGTGAGCTCACATTGTGGATCTTA
GTCTTGAGGCTCTTGGCCGACACGTTCTCGTAGACGAGACGCGACACCTGCTTCTGCAGC
CGGTCATTCTCCTCCATGAGCAGCTTGTTCATCGCGGTCAGCTTCCGGTTCACCGTCTGC
ATGCGGGAGGACTCCTTGCGCTGCTTCTCCCGGCACCTATCACAAGAAAAAGCCACACGA
TTCAGTTCGGTGGCACGCGCACCTGGATAAAACTAGTGCTGAAAGGATAGCGGGTGGCCT
CTAACACAATGATATTCTTGTTATTAGGCAAAGGCAAGATCCTGCAATGTGCCCCCCTTA
TGTCATAAAGTGTGCCTCATCAAATCAAACAGGAACAAGGCACAAAAAGCCCTTTGCAAA
AGAGACAAATGGTTAATACTACTATGCAAATGGAACAGATATGTGTGAATCATTGCCTAA
TTGACAGTGATGTGTGTGTGTGTGTGCCTGCATCTGCGAAAGTCCACACCAGATTTCAAC
ATCTTGTAATGGGTAGAAGATTCTTGGGCCATGTTTCCCCTTCATGGGTACTGTATGATA
CTAGCAAACTACTACTGCCAAGAAGTGATGTTCTTCTTCATGTTCTTACACAGATTTACC
AAGCACAGGAAAAAGATGTTGCCCTACATGTACCCATCCACTAAAGATTCAACAATAAAG
TAACATAAGAGATGAAGTTAAAATAAGATAGCACAGTAAACAAGAACACCGGCACACGAG
ACAGTGGCGAGAGGATGCACAGGAAACAAGAAATGCCCGAGGGAATATTTGTTGGAGAAA
CCCATTGCAGCACCAAAACAGTAGAGCCCAGATTTGGGAGTGACAGTCACAGCCCAAATC
TTCCCATATAAATCCAACGGAAGACATGTGAGATTGTTTGACCAGGAAATCCACAAATGG
CAAAGAACAGTGGGGGCGCAGGGCCCAAATCAGCGCGGAGAGCTTGTCAAAAATCTTGAG
AAGATGCTCGGATAAAAATAGAGCCTAAACAAAGACCAGATGCGAGCTAGCAGCAGGCAG
AGGCCGTCCTTTATTTTAGGCGTTTGTTTGCATTTGATGGAGACACATTTGAACCTCCAA
GAACAGAGTAAAGAAGGCACCAAATAAACCATACAGAAGATAACCTGCCACTCCCAAAAT
TTCCCCCAAGCTTGGCCCTTTCCGCGAGAGAGAAAATCACAGGAGCTCGTCGCATTGCTG
AAATCCACGCCCCAGAAAAAATGCCCCTCTTGCAGAACGCAGAGGAAGCTGGTTTCCCGC
ATTCCCGGCAGCGGCAGACGAAAACCTAGAGCGGCCCAGAGATCGGGGAGGGAGAGGGGG
AGAGGGTGCTGACCTTCGGTTCTGGAACCAGACCTTGATCTGCTTGGGCTCGATGTTGCA
GAGGATGGGGCAGTCCCGGATGATCTGCTGGCGGCGGAGGGAGCTGGGCTTGGGGCACTC
GTTGTAGACGCGCTCGAGCGCCTCCACCTGCTCCGGCGTGTAGCGGACGTACTTGCCCGT
GTCCACCTGCGGCGCCGCCGCCCCAGGGGAGAGCCTCGCCATCTTGCCGGCGCCGCTGTC
TGTCGCCGCTGCTGGTGCTGCTACGCGAAGAGGATGGGGAGGAGGAGGATGATGGGGGTG
AGGAGGCCAAGGGCGGTGGCGCGTCATGGCCTGCGAGAGGGAGAGGAGGAGGAGGGGGCG
GGGAGGCGTGCTCCGCTGCGGGTCGCCATGCCGCTCGCTTTCCGGTTTCTTGGGGGGTGG
TTGGTGTTGGAAGGGGTGAGCACGCCCTGCCTGCCCTCGTTTTAATACTGCGCCCGGTCC
AGTGGCCAAGCCAGGACTGACAGTGACCCCTCTACTCCCTCCCTCTCTCTCTACACTCAG
TCTTTCTCTCCCTACACTCAGCCTCTCTCTCTCTCTCTCTTCACTTTTGTGTTGGGTATA
TTTCAGATTGGAATGAAACATTTCCTTCCCAGACATGACTTGCTTACCCTTTTCTTTACA
ATGCTTATTAAACACCACTGCATGTTTACAAATTACTTGCAAACTACGTATAGTGCATCA
CTTATTACAAACTTCACTGCAGTTTTTTTTTACTGGCGCTGGTGTGGTGTCTAAAGATAA
TTGAAGTTCAAAGCAGAGAGATTACATAACGGGATGGCTTGGGCATGGTTACAGTGGGAT
GGGACGTGAGGGGACAGCTTTAAGCATCGCATTGCAAGGCTCCAGTCCAGTGTCACAGAA
GCAGGATTCCTTAAGGAATCGCAGGCCCAGAAGAAAGATTCTTCAGGCGTGGAGCGGGGG
TTATAGTAGCAGTAAAAAAAGAAATTGCCACCGCTTTTTAGAGACCAGACCGGCGTGGGT
GTTTTTATTTGTTTGTTTTTAAAATCAGGCTTCCATTCTTTCAAGATTGACACTTTGCTT
TTTCTTTCTTTCATGTAGTCTTTTTATCCCCCGTGTGTTGTAAACAAAGCTTGGCAGAGA
AATGCGCTGCTGCTGATATTAATAGATGAAAAAAGGGGCAAAGAAAGATGTGTGGTTTTT
TGCTGCAAGATATTGGCATGGAAAGAATGGAATGAAGGGGGATCAGCTGGAGAAAAAAGG
AAAAAAGATGGGATGAGATGAGATGATGCAGGGTGGCGGGCCTGCAGGAAAGAAAAGGCT
TTTTATGCTCTGTTATCGATACTGTTTGCTCCTGCAAATCTAAACAGTCAAGGCCACTGC
GCCATCGCCGCAGACACCCCGGGATCTTCTGCGGGGGTGCTGGCCGGCGGTGACGGCGTC
GTCCGGCATGGCCGGTGCTGGTGGAAGGGAGATGCGGGAGGGGGCGGCCGCAGAGGATCC
GGCCCCTGGGTGGTGGTGTTGGGCCCGTATGCTGGACGAGGAGGAGGGTGGCGAGACGAG
GGCCACTCGGGTTGACCGGTCTAGGACCGCGCGATCGGGGAACGGGCACGTGGTCTGGAC
GGCTGCGATTCGGCCGCGTGGCTACCCCGCCGTTTCTGTGGCCTCCCGGATCGTGTTTTT
CCTTACCGAAAATGTGCTCTCTTTTGCCCTGGAGAAAAGGAAAATGTTCACTCCGTCCTA
AAATAGGTGTCTTAATTTTATACTATTTTTAATATAAAGTTGTACTAATCTTAAGGCATT
TATTTTAGAACACAGGAAGTATATATCACTGTAAACCATGATGAATTTTTTGCCTAAACA
TTCGTCTTCGGATGATTTCTCTATCTCAGTTTAGATTACCTTTTCCGAGTTTAGATTAAT
CAGTTCTATGGACCTAAGCTTTCACATCATAGCCTCTTTATTTTGGCGAATGGCCCCACG
ACTATATTGCCAACAATCAGTAGTATAATGCGCCTCAGAAATAAAGAAAATTACAAACGG
ATCCTTTAAGAGCTGATTCACCACATCCATCAACGCGAGAAGACGGTGCGCGTCGTCGTC
GCTCCTGTCAGGAGCCGACGAAACCATTAGATAAGCGCACGAGCCCATGACATAGCCCTC
GACAAGAGTAACCAAACCTGAAACCCATGAATGAACAGAACCTTCTGTAACACCCCTCAA
AAAATCATGTTTTTATTATTTAAAATTTTGTCATAAATAAATAATATGTGTAGACGCGCC
ACGTGAAAGAATCAAAAAATCATGGTGCATCCTAGGGTGTACACGCGCGATTTGCGTGGC
TAAGGTTCCGGCCGAACATAACGCAACACACAATAGGCTCAGCGCACACTGTTTTCAAAG
GCGACGGAGATGAACCGTGTGCGATAACGAATGACTGAGATTGTAAGAGAAGCCAAATTT
CCATCATCGTTTGTCCTTGAGCTCTTAATAACCATCGCACTTTTCCGGTTGTCTGGCCAC
TTTGTCCCAGAACTCTCTTAAGGGTCGTTCATGGCAGTGCGCTGCACAGTAACTGGTAAG
GAGGCGACGGCATCCCGATGTGCCGAGTTCCTCGCCTCTCGCGACCGCACACATGACAAG
GAAGCGATGGCATCCCACCGCGTCGAGTTCATCGCCGCCCGCGGTCGCACAACTACCTGG
GCGGACTTTGATGCTGCCATGGGCGAATGTGCGATGGATCAAAAGGCGGCCAAAGCAAGT
GAGAAGGAGCGGAAAATGTAGAAAGCAGTCAAGAAAAGAGAGTCCAGCCGTCACAAGAAA
GAAGAGGCCGCACACTGTGCGGAGGAGAGCTCGGCGAAGATCCAAGCACGGTGGGCTGCC
GCCGACAAGTCCGGGAAGAAGAATGACGACGTCTCGCTAGCATGCCCCCAATGCTAGCAT
GTGAGAAGTAGTTAGTATGTGAGAAGTAGTTAGTGTGTGTCAACCGTAAGTTTGTATAAT
TAAAAACGAGCATCTACCACTACTATATACTACTCACTCTGTTTCTAAATATAAGTCTTT
AAAGAGGTTTCATTAATGGATTATGTACGGATGTATATAGACATACTTTNNNNNNNNNNN
NNNNNNNTTTTGCTTCGTATGTAGACTCCTAATGTAATATCTTAAAAGACTTATATTTAG
GAAAAGAGG