| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_42851
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_58642 |
1 |
1333 bp |
MLOC_58642.1 |
Available |
Available |
LOC_Os02g53180.2, FRAME:+3, EVALUE:0.0, 13102.m06065 protein 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed |
| MLOC_58758 |
4 |
1225 bp |
MLOC_58758.2 |
Available |
Available |
LOC_Os01g52240.1, FRAME:-3, EVALUE:2e-170, 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed |
CDS Structure of MLOC_58642
CDS Structure of MLOC_58758
Contig Sequence (5859 bp)
>contig_42851 5859 assembly3_WGSMorex_rbca.fasta
AAACCACCCTAGGGAGAAATTGTGCTTTCAGCAACTCCCTGGTTGGTGTTGGCATAGCAG
GGAGATGGAGTCCGCGAGTGTATCGTGGCAGGCTGTACCGCCGCGGCAAACTCGACGGCC
GACGCTGAAGCTGGAGTTGGCGCGGTAGAAAGTGCTCGCAGTTCCGCCATGGAGAGTTCG
TGAACAACTTTAACGGCCGGGGAGAAGATCCCACCCCGTCTGGATGGCGTTTGTGGTGCG
ATCAAGCGAGGAGTCGAGACATCGTACACAGTGTCGGTCGGCGATGCAGTCCCTTGAATC
GGGAGGGGGTTGCATCAGAGACCGAGAGAGCGTCGAGAAGCACCTACCGAGGCAACGACA
GCACAGACTAGAGGCAAGTTGCATGAGGAGTTGCAGTACCCGTTGGAGCAGCCGAAGGTG
TCTTGTCGATGTGTGAAACCGAAGATGCCGAGACCAAAGTGGGAGTGGCCGCTATTGGCA
TACGACGATTCGGGTTTGGTGGAGTGACAACAATGATCTTCGTTGGCGACGAGGTCTGAG
TGAAGGAGGTAGAGCAAGTTACAAGTTGCATGGGCACGACTCCTCCCGAGTTTTGAGAAA
TCACCGGTGCAGAGGACGATGATGAAGCTCTAGTCCTCTTGCTTGGGTCGAATCCCCTCG
TCGAGTCCTCCATGCCATGGCCTTTTTCGCCATCGTGGTCCTCTCCGTGCTCCCAAACTC
GAGGAACAAAATCGGCATCAACAAGGAAATTTTCACAGCTTAAGGAGAGAGTAGCTAAAT
TTTCGCATGGCAGATTTGGACATAGACCGAAGACCATCCCATGAGATGTTGCCACAGCCA
TGTGCTCGTGGTGAAAATAAATAGTATAAAACTACAACAATTCGGGTTAGGGTTTCAAAA
AACTACCGTTTTTTCCCGCCGATAACTACCAAATCAAGGGTTGGTTATCTCAAAAAACTA
AAATCATTCAGCACTTCATAATTGATCGTGATTATGACAGTTGGGGCCCACATGTAAGAA
AACTGATTGTTTGACCATCTGTTTTACTATTAATGTCTCGTCCCCATTCTCTTCACTCCT
CTTGCCACCTTCTTCCCCGAGAAGGCGATGGAGCGTCGGCTGCCTCTCCTTCCACCAGCG
CCAATCGATCCACCTTCCACCTCGTCGGCGTTGGCTGACCGCTCCTCCACCTCCATTACT
GGCCCCTCTCCCTAGAACCTCTTCTTCTCACTGTGTCCTACAACCCAGCGTGCCGCCTGC
CTACCTCTGGAGCCATGGCGCCCGATGTGCCGCCCTTCATAGAGCCATGGTGCCACCGAC
CAGAGGCGCTGCCCCGCATTGTCGGCCAACCCCCAACAGTCGTCGCTCGTGCAGGGTCCA
GGCGAAGGTGGGTCTCTGCTGCGGGTGGCATGAGCGGCTAACTCCGACAGGGCGACATCT
AGCAGGGCGATGGAGTCATCCACACGCACCCCGTGCGACCGAAGGGAGCTCCGCGGCGGT
GCCCTGGCTGCTGACCATGAGCTCCGCACGTCTACTTCTGGCACACATCAACGGGAGAGA
CCCGGTTGCTTTTTTAGAAGTTTACAGGGACCCGATTGTGTTTATAACAAGTTTGCACGA
ACCCAATGGCATTTTGGAAAGTTTACAGGCACTGACATATGGGACCCACATGTCAGTTAA
CATCCAAACAAATAGTTAAAGAGACAGATTGTTTAGGTGCGAGCCCGACTTGTCATAAAC
CAGTTTTGTTTTTTTAACAACGACGATTTTAGTTTCTTTAATAGCCGACCTCTAATTTGA
TACTTATCAGCGAAAAATTATTATTAGGTAGTTTTTTTTAACCTTGCCTCAAATTATTGT
AGTTTTATGCTATTTACTCTTTTCGGTGGGTTTCCCCGGTGATCCGCAGAGCTCGATCCT
TGTTTTCCCCTCCACCCGCTGTTCTTTTGAACTGCTCGAGATAAGTTTTAGAACAATGCC
ATGGTCCTGATAACTGGAAAGGAGAACTTTAACCCGGCCCCTACCATCCGGGCCGGCGTA
AGGAGAAGGGAGATGAGACCAGGGATGACAAAGACGCTAGCTCGATCGAGCTGTCCATCC
ATGGATCGATCTGGGACATGGCCGGGGTCTAGTGGTCCAGCTGCAAAGCACCATGCAGCT
TTGATGCGTGCGTACAGGAGTGCTCCCGTTCCCGCTTTAAGTCGACCGGCACACAGAAGT
CTGGACAATAAGTGATCTACATGCTATTTAGCTACTGCTGCAGCTGGCTGTTGCTGAGTA
GGACAGACATCGGGTAAGCGCTCGAAGTTACTAGCCCTAGCTCTAGGCTCTAGCTACTTA
TCCATCCATGAATAGATCGCGTCAGGTGCCATGTTTCAGACATGAACGACCGGTGACCCC
GGACAGCAAGTGATCGACCGATGTTGGAGTACCATATATTTGTTGACAGCACAACTCCAC
TATGGAGTGTGTGGCCTGCGTCTTTGTCAGCTGTACTAGGCCTAATCTCTGTCATTATCA
ACCTGTAAAGTAAGAGATAACTCCATCCGTACTTCGCAGAGTTCATCAACACTACTTAGT
TAGGTATATAGAATAGCGGCCAACGTAGACTATCAGCCTATCAGGCTAATATATACAGTA
GTACCTATCCTACTGCTCCTGTCTCCATCAGGGCATATTGATTAGCAAGAAGCCATATTC
TTGGAGACAACTTAGTTATGTGTACGTCGATCAGGTAAGCTACACGAAGTTGCGGCGCGC
ACGCTGATGCGATCAGCTAATTGGGGCATATCTCGGTTGCTTTCGTGCCTGTTGTTCTGC
ACGTCCAGACAGCTTTGTTCCCCATTCCATATTGATTGACCAAAGTAGGAGCAATTAACT
AATTAAGTGTGTCGTAATCTCCTACGTCCCGGCTAGGTCATTGCAGTCCGGCCTTCTCTC
TTGCGCGCCTATAAATTGGGCACTCAACACCGGCCTCAGAGCGCACACTCACCCTCTGCT
TCAGCCTTCAGCTAACCAGCAGTCCAGCACAGCACACACACATACAGATATCGAGAGCGA
TGGCAATTCCTGCTAATGCAGCTGCCGCCTCGTTGAGCTTCCCGGTGATCAACATGGAGA
ATCTGGAGACCGAGGAGAGGGGCGCGGCCATGGAGGTTATCCGCGACGCCTGCGAGAACT
GGGGCTTCTTCGAGGTGCCACTGCCACTGCCACACACACACACACACACAGAGGATTCTC
TTATAGCAGAATGATTTTATGAACGTAGTGCTTGATGGTTCTCTTCTTGATATATGTATG
ATTTAATTGGTCGATTCTGGTGCGCGCAGCTGCTGAACCATGGCATCTCGCACGAGCTGA
TGGACGAGGTGGAACGCGTGAGCAAGGCGCACTACGCGGCGTGCCGGGAGGAGCAGTTCA
AGGAGTTCGCGGCGAGGACGCTGGAGGCCGGCGAGCAAGGCGCCGACGTGAAGGACGTGG
ACTGGGAGAGCACCTTCTTCGTCCGCCACCTCCCCGCCTCCAACCTCGCCGACCTGCCCG
ACCTCGACCACCACTACAGGTACCAGATTCAACTCTAGTGGGATTTTTGCTGCTTGCATT
TCGCTGTTGAAGCAGCCTATTATTGGTCCTCCTGACCGAACATTTCGTCCTGTACGAAAA
GTCATACCTGGCGCTGCATGCAGCTAAAAATATATCCACCAGATATAGTACTGCTGCCAG
GATATCACCAGGAGATAAGATTGCTTCCGCACATCAGAATCCTAATTCTTTTCTAAAAAA
TCATCAGAATCCTAATTACGTACTGTAGTAACCAACACGACTGGAATCACTTTTTGTTAG
CAAGTGACACTTGTTAACAAAAGCTGCCTTTTTGGTGTCGTCGTTTCAGGCAATTGATGA
AGCAGTTCGCGTCGGAGATCGAGAAGCTGGCGGAGAAGGTGCTGGACCTGCTGTGCCAGA
ACCTGGGCCTGGAGCAGGGCTATCTGAAGCGGGCCTTCGACGGGTCCAAGGGCCCGACGT
TCGGCACCAAGGTAAGTAGCTACCCGCCGTGCCCGCGGCCGGACCTGGTGGACGGCCTCC
GCGCGCACACCGACGCCGGCGGCGTGATCCTGCTGTTCCAGGACGACCAGGTCAGCGGGC
TCCAGCTCCTCAAGGACGGGGCATGGGTGGACGTCCCGCCCATGCGCCACGCCGTCGTCG
TCAACATCGGCGACCAGCTGGAGGTGATCACCAACGGGCGGTACAAGAGCGTCATGCACC
GCGTGCTCACCCGCCCCGACGGCAACCGCATGTCCATCGCGTCTTTCTACAACCCCGGCG
CAGACGCCGTCATCTTCCCCGCCCCGGCGCTCGTGGCCGCTGCCGGCGCCGCTGAGAGGA
ACGAGGGCGAGGAGGGCACCGCCGTGTACCCGAGGTTCGTGTTCGAGGACTACATGGACC
TGTACTTGCGCCACAAGTTCGAGGCCAAGGAGCCACGGTTCAAGGCCATGAAGGCGGACG
CCGCGCCCATCGCCACCGCGTGATAAGTGCGTGTGCTCGTACGTGCCAAGGCCGGCCGGG
ACATGAGTATTACGGGACGTGTTGATGTGGTGTACCATAGATATTTGCGTGTGGGTGTGT
GTAATGTTGTCGCTGGTGGCGTCGCAGTGCATGCCGTGATGCTTGTGTGTGTTACCGTAC
GTGTGAGTGAAGCTTTCTTCTCTCTTTTGAATAGTATGTGTGAAGTTTTAAGTGGTGTAT
ATAGTACTTCCTCCGTTCCTAAATATAAGTATTTTTTAAAGATTTTACTAGGGACTACAT
ATGAAACAAAATAAATGAATCTATATTTTAAAATATATCTATATACATTCATATATACTC
CCTCCGTTCCNNNNNNNAAGTCTTTCTAAAGATTTCACTAGTAGACTACATACNNNNNNN
NNNNNNNNNNNNNNNNAGTGTAGATTCATTCATTTTACTCCGTATGTGGACTCCTAGTGA
AATCTCTTAAAAGNNNNNNNNNTAGGAACGGAGGGAGTAGTTCGTAGTGGAATCTCTTCA
AAAATTATATTTAGAAACGGCGGGAGTACTTAGTAGCTACTGTGTACTACGGTATCAATT
GCTTAACCACGTTAATGATGTTTCGGAAGCTGAGTTTCTAACAAAATGTTTTGGCATTTG
GAATTTCATGGAGGGTGTTTGGAGTTCTACATATTAATTTTCTTTTTTTAGTTTACATAT
TGATTTGTTTTATTTATAAAGCGGGACGAAACCCTATTTTGAGAGTTCTCCATATTGATA
CCGAGTCTGGTTGTATGAAGATAGCTATGATTAAGAACGAGCTCGCAAAAATCAAAGTAT
GCTTTTATGATTAGAGAGATCAAAAGTAGCATGGGCGAAAATGATTCTTGCATTACTCAT
ATTCATCGGAACTTTAATAGTGCTATCGGCCAATTTCAGTAGGTTACAATGTTGAAGTAT
TGTTTGGCTAGACTCTGGTCTAAAAGAGGTTCAAGATACTGTTGGATGAGATTATAATTC
CTAACTTTTCAGTAATGCAAGAATTATTTCACACATAAAATGTTTGTGCATGTGCAAACG
AGTGTGCGTATGACAAGAACCAGCCTGACAATCCAGCATCTATGGGATTTTTTTACGGAT
GAAACTTACGAATTAAGGTTGAGGGTTCGAGTAAAATCGAGGAAAGGTTCGGCCCGGCTT
CAAATAGGTGTATCTTTATTGATAGAGGCAAAGTTGTCCCTNNNNNNNGATGAGATGGTG
GTTATCGTTTTGGTAGAGTAGACTTTGACGATCCGACTACGAACGTGTGAAGACGTCGCG
CCTTAGCAATCGTTAAACCAACTCCGAAAGGTTATTGAC
