| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_42804
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_58589 |
2 |
3349 bp |
MLOC_58589.2 |
Available |
Available |
LOC_Os07g03230.2, FRAME:-2, EVALUE:0.0, 13107.m00263 protein eukaryotic translation initiation factor 3 subunit C, putative, expressed |
CDS Structure of MLOC_58589
Contig Sequence (4448 bp)
>contig_42804 4448 assembly3_WGSMorex_rbca.fasta
CACGACCAGAGCCTCCGGTTCGGCCGGCGTAGCCTGACCTGCCACGGCCTCGCCGCCCCT
GTGATGATATAAAGTTCTCCTGCCACTTGCCCAAACCGTACGAGTCTTGACCATCACCAC
CCCTGCGCCTGGGCGGTGCACCCTCAAGGGCGCCACCAGTCCTAGCCTCATACGCCCTCT
CGTTGCTCTCCACAAGGACAGAAAGCCTATCCGCCATCTGGAAGAGTAGTCCCTGCAGCC
TAGTTTGATCCACATTCTGGAAAATGATGCAATTCGTTGGTTGGTCCCAGCTTGCATGAA
GCTCCTCATGCATCATCATCTTGCTAACAATGCTGTGAGCATGTTTCTCGCTGAGGTCAA
ACATTGTTGTGAGCTGGTCAAGGCTCAGGAACTCGTAGCAAGACGAGTAAGAAAACAGAT
AGGTTCTGAGAGCCTCTTCCTTGATCTTAAGCTTCAGCATCTCAAGAATATGCTCCTTGT
TCCTCAAAAGCTTCCAGGTATCGAGTGAACTGATGACACTGAAAGCCTTCTTGTAGTCAC
CATTACTGAGGGCTCTTGTGGCAGCCAATACATTGTCCCTCACAGTCTCCGGAGGACCAA
CAAAAGTCTGTCTCTCGCTAATTTCAAGAAGCCTGCGGAATGTTCTGCTCATAGGCCTCC
GTCTATCGAAAGAACTGGCAGCCATGTTGGGGACCTCAATTAGCATAGCACAAACCAAGT
GTATGGCTTCCAAAAGTTCAAGATTTATGTGCATATGGTAAGGCATCATCCTTCTCCTCT
CAAGTCTTTCCTGCAAGAATAAGAGTAACCACAGTGTGAAAAGTGATGATCACTAGCACA
AAAGTAACTATATCTTCTGAGCACAGCTTTACATATTAAATCCTGTAGCTGAACCCAAGA
ACTGGAGCGGATATATCAATCTTGGAAATACTTAGAATAAGAGCTGATAATTTTTTCAAC
ATGGATGAAACATCAGAGTTATTTTGTGTAGAATCAGGATTCAAGTATTTGAAAATTCAA
AAAGAACGAGGAGTAGCAAGTATAATGAAATAACAAATAAATGCATGAATAGAAAGTCAT
CGAAGAATTCTGTAAACAGACTTGTTCTAGTACAGAAATAACTCAATAGTGGCACTTTTC
CAACTATGAATGCTTTATGCAGGACTAGGTGACAACATACTGGCCAGTGTGTGGCTACCC
AAATAAGGGACAAAGAAAGGGTGTGTTCTAGAAATTTCACCTGTTCAGGAGTTTTGTCAT
TGTATCGGCTTTGCTGTACCCCTTGCGCAAGCAACTCTTTTACTCTCCCAAATGAATATA
GCTCAGACAGGCAACCATGAGCTTCAGCAATAAAACCAGCCCTGAAAGCACATAACCCCA
GTTGGGCCATGACCCTGTTGTATAAAATCTGTGATGATATGTCCATAAGTTGAACCCCAT
CTTGTAAATGACTCATTAAGGTCAAGTCACGAGCCACTGAAAATTCATCAGAGATTGCAT
AGTGATATATCTGACACAGCATTCCTCGGGCTTTGGTCCTTTCATCTCCATACTTGTAAA
TAAGAGACATCAGATCATCCATCAATTCTCTGTTGCTTGGTGGGAAAGTAGGCTTCCTAG
GCACGACCTCTGGAATCACAACAAATGGTGGTGGTCCCCTATTGTCATCAGCTTTTTGAT
GCTCTTCACCAGCCTCAGTATCTCCATCATCCATGCTAAGTTCGGTCTGCTCAGCCAGTT
TCCTCATTGCATCATACACTTCTTGAGGTTTGTAGTAGACTAGTTCAACACGACGCAATG
CAACCTTCGCAGCAGCCTTAAAGTTCTGAACCCTTTCTTGGTAATCTTGGACATTCTGTG
CAACCACCAAAAACAAGGGTTCATCTCTAAGCCTCTGCACATAATCTTTTGTATATGGAT
CGCTGCACTGTAAACTCTTGAAAAATTCAGAGTCAATTCTCTCCAGAAACGCAACAAGGT
CACCTGTAACATGGATCGTTCCATCGTAGTCAGCACCCTTCTGAGTTTCCTTATCATCAG
GCTCCACTGAGGTGTCTACAACAATATTAGGATATTGTTGCAGTATATCAAGCACAAGAA
GCATATTATCAACACACTTCTTCCACACGTTGATCGGCATATGACCAAGTAAGCTAGGAT
TGACATCAAACTGAGCAGAAATCACATGAAAAAGAACTTCAAGCTTCTGGGCAGGAGTTT
TTGCCACACGAGTCAAAAAGGTTAGCTTCTCCACACGCTCAATTCTCCCAGTGCCCTTCT
TACCCCTCGACGCCACAATCTCCTTAAGCTTTTTATCAACAATATCCCATGTAATCTCAC
TGGGGTCTTTCAAGAACTGTTTGTCCATAGTCTTATCTTTCTTGCTCAACTTCTTTTCCC
AGGATCCACCCGGATTACTCTTATTGTCATCGGTACTGTCACCTGGTTCAGGATCCACAA
TATCTACGTCAGTACCATCATCACTACTGTCATCACCCAAAACCTTGTCATCTGCAATGT
CATCTTCAAAACTCTCTGGATTATCTCTGCACTTCTGGATCAGGTCTACATACTGCTTAT
TGTTCTTCCTAAGTTTTTGTCTCACTGCACCGAGTGCCTTGAAATTGCTACTGCTCATCT
TCATCTTGGGTTCCTTTTTTGCAAGAGCCTCAGCAAGGAAGTCCTCCAGTAATACAAGAG
TTGTGATGTACCTATTTGGAATTTTGGTAGATTCATTGACACGAACAACCTTCTCAAGCT
GCTTATTGAGCTTGTCAAAGCTCTCTTGCAAGCTAAGCCAGTCATTGATCTTCATTGCAT
TGCGCATCTGGTCGGCAGTAGCTTTCATCTCATCATTGCGCTTGTCCTTCAACGAGCGAA
TCACACGATGGCTCTCAGTATCAGAGTCGTCACTGTCCTCTGTATACAAATAGCGGTTCT
TGGACACATCACGACCCCCATCACCAGCTTCTGATTTTTCACTATCGCTCCCTTGTTCTG
ACTCAATCTCGTCCACCTCCTCCTCAGAGTCACTGTCTCCCTGATATTGGGTGGAACAGA
ACGAAGATAAAGGTATTAATGCATTTGACAAGGATGAAATTTATACATATTAGTTACTGT
ATATAAGGATGAAACAAAGAATTGGAGTCGGCGACTCAGTACCTGTCCCCAAAAACGAGA
TGCCATGGCTGTTGTTTGTTTGTTTTCCTTCAACTAGATTCAAAGCTCTGCAAAAGTAAT
ACAGGTAGAGAAAGAATTACAATCAGAACAAACTACAGAAGAATGCAAACGGAGTTTAAT
TGAACCACAGGCTGGCAGAAAGAATAATAACTTGTATCCTCAGAACACGCAATTGACCCT
AGCGGAATAGCAGAACCATGCATACGGACCGATTCAGATGGATCAATCAAACCTCAGGAC
AAACATTAGCTCATCAGAAGCAGTTAAACCTAAGTTGGCGTCGATGAGCATAGATCTATA
CCTATCACCTGAACACAAACCAACTGAATTCAGGAATCGTGAGATAGAACGAGCAACGGC
GCGACCAAACACGACAGGTCAGCTATGCATAGAGTCCGCGAGATCCCACGGAATCGGGGT
GGCGCCCGTCCTCTCGTCGGCGGCTAGGGCTGGGACACGGCGGTGGCTGGCGCGCGACGA
GGCGGCGGGGCCGAGAGCGCTGGTCGCCGGGATGCAATGCCAACTCGGAGAGAAATTCGA
TCAGGTAGATCTTACCTTGCCTTGAGTTGCGTCGGCGGAGCGGAGTAGGCTCGGATCTCG
CGGAGAATGGAGGCGTGGGAGGCGGAGGCGCGGAAGCACTGTAGATCAAGGCGGAGAGGG
CTAGGGTTTGGTTTCGGAAGGGTTTTTTTTATGAGAGAGTTTTTTTCGCGCTGGACTCTT
GGTGGGCTTTTTTTCTTTTAAGCAAGTGGACTCTTAGTGGGCTGGGTCGGCGTATTGTTT
GGAGTAAAATGGGCTGGGGGCTGGACCTATGCTCTCTTTCCAATTTTTCTACCCAGCGAA
CATTAGCTGCATATATACGAGCGCACCCCGTACCCATCCTCTTGTATTTGCTAAAAAAAA
CTACCGTGTTGTTTAGGGTTTCTTCTACTCTGGTCTCTGGCGGTGATTCTCATCGCCGGC
ACGAGGCTACCACTAAAATCGCTGGGGGTCGGGGCACTACGTTCCCCGAGGCAATAAACC
CTAGGGTTTTTCTATCTTCCGGCGGCCATCGCCGGAATTCTTTCTACGATAGTCGACGAT
CCGATCTAGCGATTGATGATCTCGACACAGGAGCTTCTGGCAAGGATGACCCTGCAGGAA
GAGGAGGCACATGAGTTTGTTTGGAAAGAAGAAATCCCGGACATGGATGAACCAGCGAAG
TGGCTCGTGATGTTAGGAAAATAAAACACGACCCAGCAGTGGAGACCAGTGTGTGCGCGC
GCACTGGG
