Contig Data
morexGenes
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Map Locations of contig_42761 (6434 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42761

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58533 1 1662 bp None Available Available LOC_Os11g39310.1, FRAME:+3, EVALUE:1e-27, 13111.m03880 protein NB-ARC domain containing protein, expressed
MLOC_58534 1 1237 bp None Available Available None





CDS Structure of MLOC_58533






CDS Structure of MLOC_58534






Contig Sequence (6434 bp)

>contig_42761 6434 assembly3_WGSMorex_rbca.fasta
CCACAGATAGGGAAGCTGCAAAATCTTGAGACACTGGATGTAAGGATGACAGGAGTGAAA
GAGCTGCCCGAGGAACTCGTCATGCTTCCCAAACTAGCAAATCTGCATTTTGGCCGAACT
GGGGTGAGGCTACCTGCCGGAAGTGACCGCTTCAAGTCAGTCAAGGTGCTGGGCACCATT
GATTCGAGGGAATGCTCGGCAAGCACCCTGGAGGAGATTAGAGAGATGACTGGATTGACT
AAGACTGAAGTCATGCTGTATGATGAGCCCGCCGACGTGCCAAAAAATGACAATCTATTG
TCTTGCATGGGCAATTGCACTAGTCTGCGGTCCCTAATAGTTCATGGTGATTTCATTACG
AGTGACGACCTTCCTGCATCTCCCAACTTTCCTCTACTTGAAAAGCTAACGGTGGCCACA
AGATTGGTTAAATTTCCCGGGTGGATCGCACATCTCAGTCGTCTTAAGAAGCTAGAAATC
AGGCTCTTTGAACAAGGACTAAACGATCTCAAGATACTTGGAGATCTGCCCAGCCTCACT
AGCCTTGCATTCCAGCTGTTTGGCAACCCACGAAAACAAGTCGCAATAACTTCAGGTTTC
GCCAGACTTGAGTTTTTCGCTTTCGACTACTCTGCGCCGTGGGTAAAGTTTGATCAGGGA
GCCATGCCAAGCCTGAGACACATCGAGCTGACACACTATTCTTCTGGCCCAGCAGGTAAA
AGCCCAGCGGGTATCATATATCTTGAGAGCCTGCAGAAGGTCACCCTCATCTACTCTTCA
CACTGTTCAAGTTGTGCTGGCGTCATCAAGACAGTTGCTGTCATGAGGAAGGAAGCTGCC
AGCCATGCTAATCGAATTGTGCTTTCTGTTAATGGTGACGATGAGATTTTCCCATCCATC
TCAAGTGTTGACGGAAAGATTACTACAACCGAAAACGAGTGTTAGCTTCCCTACTACTCT
ATGTGTGGGTGTATGTTCTCATGGGTGCAATTTTATTCATAATCCTTTTCTTGAAAAAAT
AATAAAAAATAATAATACAAATTTCAACAAGTTCTGAAATAATATCACATGTATATAATT
TATAGGTGTATTCTATATATGTGTAATTTTTCATTCGAAGATACTTGAACAAGTGAGCTG
TCCAAATATTTGTCTCTATTGTGTTGCTCACATGTTAAAATCTCTCTTAATATTTTTTTT
AATACAAGTAGTGTTCCCATTACAAGAGGCCTGGCGCAGTGGTGAAGTACTCCCTACTTG
TGCCATGAGGTTCTGGGTTCGATGCAGCCTCACTGTACTGTGCAGGGGTAAGGCTTGCAT
GGTATTTAACGATTCCCTTGCTCAAATAAATGTCATGGATTTCTGGAGTATTTGAATCCA
TAGTTTTTTTTCCTTAGGATTCATTTGCACTCTATTTTGGAGTAAAATTTCCATCCACTC
AAACCTCTTGGTAGAATCCATGTGTGTTATGTGTTGTCAAACATCCGTGTGATCCAAACC
CCTGCAGTGTTGTAATCTTGTAGGATTTTCGTTCCCAACACTTTTTATTTAAATTTATGT
AGTTTTGTTATCTTATAGTGTGACATCCTAGCTTAAAAGGATTGATAGTACATCCGTGGT
TGAGCTCGTGCATACGTATGTATTGTTCATTATTAAAATAAAATGAAATAAGGGGGGCAC
TATGAAGTCGAGCTGGTCGCGAAAAGGCCCTTTGATGTTGCTGTTTATTGCCAAGTCCTT
CAGAAATAGGTCCTTCATTGCTCATACCTTGTTATTAATGGAAAGGGTAATAGTTCCGAA
TTTGCTCCCTAGAGTCAAATTGAATATCCGAATAGTTAGAGACTACATATGTAGCCGCTG
TTAAGAACAGTAACTTTTAAGTGTGCGAAAACTCAACAAAAAAGAATGCAACTGATTTTC
TCATCAAAAATGTTTGGGGAACTGAATGGATATTCTACCATGAGCCGCACACTTACAGTA
AACCAGAACAAAGGGTATAGGTAGCTTTGAAGGCATATTAATTTGTTCAAGAATCAAAAC
CATAACAATGACAGAGTTATCATGACGAACAAAAAAATATAGAAGCTTAAGTGAATAATG
AAGATCACTCTTCATCTGAAATTTAAAACCACTTGATAGTGCAATTGGAAAGATAATGGA
AAAACATCTAGGTTCTAACTGGTAATCAGATGCTCTGTAGTCTTCTTTATTGGCACAATT
TTGACTGAGCCACATTGTTGTTTTCTAATGTTGCTGCCATATAGTCTACCAAAAAGCCCA
GGGTTTGCCTAGTCTACCTAAAGGGTTCCAATAAGCATTACCCCAAATTCCCGTGAAACC
GCCGATAAACCACTAAAATACTGAATGAGTAATCTTCTCACTAAAATACTGAATGAATAA
TCTTCTCACGGTCTTAAACAATTTGTGTGCCTACACCTTTAGCATGCAAGTGGTTCTTCC
ATATTTCAGTCACATTGTAAAATATCACCAAGAGAATATTCATTCCACTTAAATCCACAT
ATTGGAGCCATGTAGTCATTTTGAAGAAGTATATAATCTTATGATCTACAGGTTGGAGCC
ATGTACATTCTGTAAACAAGTTTGTTTTTTGTGGGGATGTAAACAAGGAAATTTTAATCA
CTGAACAAGTATATGAAGGTTCGGAAGACAGTCATGTTGACCTGCCGTTTGAAAAATAAA
GTAAAAGTACAAAAAATAATATAAAAAGTACGATTTCAAAATGTACGGAAAGCAAATTCA
AGAAAATTTACTTAATAGTTGTAGCTTAGAGCGGGTACTTCATGAACTGAACAGAGAATA
TACCAGTGTTTCGTTGGCGTAATAAATTAGTTTATCCTTTTAGATAACTTATCCCTGCAT
TCGTTGGTGTAATAATTAGTTTATCCTTTTAGATAACTTATCCCTGCTAATTACATGATA
GCACGTAAACAATCAACTTGATATTTCAACGGAGTGAATGTTAAATTAGATAGAGTAAAC
TCTTGGGTGTGTCTAGGACTCGTCCAGATGTGACATAGTTATTTTACATCTAATTTGATG
TCATCAATTGTTTGTGGCCCTCGCTTGTTTTGTTTGTGAAGAACTTCATCTATTAGAGGA
TGCTCATAATTCATATCATAGCGATTGAAGATTTCTCTAGCTTCTTGAATTATTTAGTCA
AACTCATTCATTAAGATGATCTTGGCAAGTTTCTTTGCCTTGGGATAACCTAAGTTGGGT
AACTCAAAGAATAATCGTTGAAGGGTGGGATGAGTGCGAATAAACTTTCTCTCAAGATTA
ACTATGAGCGCACAAATAGCATTTGCATAATTTTTGTTTTTTTAAGGATAGACACTTCAT
TCGTTGCAATAGCCCCCGTGCACATAAAGAATTCTAGAATAGTATTTTTTCAATAATATT
CCCACTTCCAACATAAAAGGTTTTAGTGTCCATAACCCGCGGTGACTTATTATCATGAGG
TTCATCATCAAGATTAACTAATTTAGGCAGATCCTTGTAAGTATCGCTAAGACCTTCTCC
ACTAGCATTTTCAGCAACAGCTTCCTTAAACTCAAACATGAAAGAAATTTCCAGCAAGCA
AACAAGATACAATATTTTTGCCTTTTGATTTTTATATAACAAAATAATAAAATCACGTAA
AAAGTATAACAAGTTGAAGATAATGTTTGTGAAGGAACCTTGAGTTGTTTGATGATACTC
CCTGGCAACTGCACCAGAAATCCTTCTTCTACTTTGTAGATGCGTTGGGTTTTTCCCCGA
AGTGGAAGGAATAAAGTAGTAAAGCAGCAATACGTATTTCCCTCAGTTGAGAAACAAGGT
TTATCAAACCAATAGAAGAATCACACAAACAACCATTGACAATACCTACACACACAAGAG
CAATTACTTGCACCCAACGCGGGCAAGAGGTTTGTCGATCCCTTTGTACTCGTTCATTGC
AAGGATCAAATCTGGTAGTAGTAGATAGATAAATTGCAAAGTAAAATAAAAGAAAATAAA
TTACCGCAAGATATTTAGGGTGTTAGTAAATATGTTGAATAGACCTTGGGGCATAGTTTT
CACTAGATGCATCTATCTCAAGAACATAGCATACAGTGAATAGATAAATTACTGTTGGAC
AACTGATAGAAAAGTGCATGGTTATGATGTTATTCATGGCATGATCATGTATATAGGCAT
TACGCCTGTAACAAGTAGATCAACTCCTCCCTGCATCTACTACTATTACTCCACCAATTG
ACCGCTATTTAGCATGTATCTATGGTATTAAGTTCATGACAAATGGAGTAATGCCTTAAG
AAAGATGACATAATGTAGACATAATAGAATCAAGCAATATGATTAAACCCAGTCGTTTTA
TTCTTAGTAGCAACAATATAAATACGTGCCTCGCTACCCCTTCTGTCACAATGTGAGGAC
ACCACAAGATTGAAGCTACTACAATACACCACTCCTTTTGCCGATCTACTCATCTACTTG
ACCAAAGCAAACTCATGGATAGGAAAGCATACATAGTTAGGACAATCATACATAATAAAA
TTCAAAAAAGACTCAATTAGTTTCAATGAATAATCTGATCATAAACCCATAATTCATCGA
ATCCTGACAAACACTCAACAAAAAAGGATTACATCTTACGGATCTCCGAAGAGAACAATT
CATTGAAGATCAGAGAGAGAGAGAGATAGATAGATAGGAAGATAGATAGATAGAGAGATA
GAGAGAGAGCCATCTAGCTAATCACTATGGACCCGTAGGTTGATGGTGTTGGAAATTAAT
TAGTAGATTAATTCAAGGGATATGTCCAACCCGAACAACCATGTCTCCTCTTTGTGTCTA
TTGCCAACAGACACCTGTTTTGAAGGGATGCCTCCGAACAGACACCTCTTCTTCGCACCT
CTTCCAAATGTATATATACTTGAGAATCAATAAAAAGAGGACTGCTGGTCCATTCACTTC
CATTCAATCTCGTTTTACTCTAACATGTTATCACACACTCTGCTCTCGATTAGAGAAATA
GGCCACACCGAAAGAATGATGGCAGATGCATTCGCGCATCGCAACGAATCACCGACGACG
AACTCGAACCTTTGTCGTCGATGCGGCGCCAAGGCCACGACCCACGGCCGGCCCTCCGTA
GCTACGCTCTCCGGCACACGCGCGGCGACCTCCTCGTTTCAGCGCTGCTCGGAAACAGGA
GGCAGCGGCACGTCGGCGGTGCAGCGATGGTCCCTCCGGCCCATGCCTGGTGCACAGCGC
CCTTCGGTTTGGCTCCTCCCGGCGCTGCAGCATATCTGGTGTGACGCCCTCCAGCCAATT
AGTCGCTCCAGCATTGGCGGCAGAGGGAGGCGCGCAGAAGACCAACGACACTCCAGCGAC
AACACCCTCTGGTGCGTGGCATCGGGCGCGCAAGCCCTCCTGGCTCACACCTCGGAAGCG
CCCTTCGGCCTCCGCATACAGCGCACGCGTGCCTCACGTCACGACGGCGACGCGTCACAA
GCCGCGGATGCGCTCCCATCACGGCTCCCGGTGGCACGTCCTCAGACGCGGCCAACAACC
GGCGATTGGAGCGACGGATCCATCCGACTGCACGGCGCTGTCATCTACCAACCGGCCAGA
ACACGGCGCGTTCCGGCGCAGTTCCGGCGCAGTCCCGTCGAGGCCACGACCTGAGATGAG
GTGGCGGCAGAGCAGCCCAATCCTCCGGCGCGTGCGGCGCAATTTTTTTGGCCGGCAGGG
CAAATCCCTAGCAGCGGCGGTGACAGGTAGAACTCGTGATTTGAAACCGCACGGGAAAGA
GAGATGATTGGGGAAATCCTTATCTCTTTGACATTATTCCGATTAGCCCTTGTACTTCTG
TATAACAAGTACACGTCCCTGCAATTTTACTGTACACGTCCCTGCAGTTTTACTATACAG
AACGTGTATAACAAGTACACGTCCCTGCAGTTTTATTCAACCAGGCTTACTTTTCTTCCC
CAATTTAGTATGTGTCCATACTTTAAATAGTAGATTTGGCGATCAACTATTTTGCAAGTT
TGGATAGGAGACTCACTTTCCATATTGCATTTACAGATTGTAAATGACAATTCTATCTAG
AGATTATAAATCAACATGTTCAATGTGTCTGCCTCAAGCATTCTCCATAACATGTAATTT
TAGTACAACAACTATATTATACAATTAAAATTAAATTTGGAATCACAAGGTATTTGATGG
CATCTACTGCATATTTTGCAGATTATCCATCAATACTGTAAAGTCCACGTCTTGTCATTT
TTACAAGATGATTACCTTCAAAGTGCCCTTCCAAATATTAATATGTGACTACCTCTAGAT
ATCATAAGGTAATAATGGCATCTACTGTAAAAAAATTTTACAGACTATCCACTATTACTG
CAAGGTCTACATCA