morexGenes - Barley RNA-seq Database

Contig contig_42715
Source Contig contig_42715
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42715 (7513 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42715

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58492	1	2640 bp	MLOC_58492.1	Available	Available	LOC_Os01g02090.1, FRAME:-3, EVALUE:0.0, 13101.m00143 protein expressed protein
CDS Structure of MLOC_58492

Contig Sequence (7513 bp)

>contig_42715 7513 assembly3_WGSMorex_rbca.fasta
GATTCTAGCGTTGTTCGCCTGCTAAAGAGGTCATGCATGAATGCTACTGATTCTAGCGTT
GTTCGCCTGCTAAAACTCCCAGATGAATATTATGAAGATATGACAGACCAAATATAAATA
TAATACACAGAGGTCATGCATGAAGAAGTCCCTGCACTAAGATAAGAAATAATAAAATTT
AAAAATAATATAACATTGAATCACTTCTCTTATTGAATATCGCCACGTCTCACATGTTAA
AGAAATTCCGCAAGGACAAAAAAGGCGAAACACTACAGATTTCAATTTGTTGCGTTGTAT
TCAGAATGATTTGTTTTGTACCTTGCCTGTACTATTTAACTCTTTGCGATCAATAAATCA
CGATTTAATCAAAACTTGGTCGCATGATCCTTAAAACGCTTCCATTCTATTAAGAACATG
AAATGGACACCATCGGCAATGGTCTTTGTTGCTCTATACAAAAAAGAAGTCAAGCATCTC
TACATGTACAAACAAAAGGACAACTACGACGGATGTAAACGTGTTATAATTAACTTTATT
ACACCAGTGAATCGTGCCAAAACAAAACTACACCTCTTTCCGTCCTATAAAACCCCCAAA
AAATCTCAACCAGCTAAACATGAAAAAGATTACATGCATGCAATAAAAATAAAATTGAAG
CACTTATTCAAAATATAAATGAGACTTTCGATCTTCGCCACTAGTACCTATATACTACTC
CATCCTTCCGTCCCGAATTAGCCGTCCGCTCAAATGCCCGTGCGTGTGCGTGTGTCGTCA
ACATACTGACTGACGGGTGCTAAACTTCTCAATTCAAACTCTTGGACAAGTGGAAAACAG
GTGGTAAAACCTAATCAAGAATGTAAGCTAATCATACTGATTGGACACAACAAACAATTA
AAGCACTGGACCAAACTTGTCATCGTCGCGGCCACCATATCCCCACCCAACCAACCAGAC
ACAGCACAAACAAACACACACATTGTATTTATTTCACACAGCAGCGGCACCAGGTGTCCT
TTTCAATCCAACCAATAGGGGACAGAAAGGATACCAACGAGACAACACACAAGAAGAAAC
CCCGAAACTAAATTAAAAACTTGTCATGGCCTCTAGCTTCTGTTTACAATGTACTTGTTC
AGAATTCTGGTACAAAACATGCAGTACAATACACCTACTAGATTGTACTTTTTGTAAAAC
AAAACCAGACAGACACAATGAGTGATGATGAGGTAAAAGCCCAACACTGCAGACACCAGG
TATGAGATCGGCCTATACAACTACATCTCAGACTCGCGCTACACACACGCGCGCGCTTAA
GAGGCGCAGCGGGTTGGTTGCTCATCATCTACCGCCAACTCTTCCTCCTTACACAGCACA
AGCACAGTACTGAGGGCCTATAAAAAGTAAACCCACACGATCATCATCAAGATACACAAG
CCTACACGGCAGCAGCCACCCCTGCCCTGCTGGGTGGGTAGGGTAGGGTCGGACCAAGGG
ACAACAAGCCAAGTCGCGCTTATTTGCAGCAGAACGGGAGCAAGTGAGATGAGCTGTAGT
AGTAGTAAGTAAGTAAAGGGCTACAACACCAGTGTGATATGACGATGGCCGGGGCAGTGT
CATCAGCCTCTTCCATATGAACCGCTGCCGCCACGCTGAGGATACGAGTCTTCCTGCCCG
CCACCCCTCCCATAGCCTCCTCTGCCGCCACCGCCACCGTAGTAGTTATCCTGTCCACCA
CCACCACCACCACCACGTCCCATGTTTCCATAGCCTCCCCTCCCACCGCCGTAGTAGTTC
TCCTGGCCGCCGCCCCTTCCAATGTTTCCATAGTCTCCTCTCCCACCGTAGTACGACCCA
CGGGAACGCCCACCACCCCCGCGGTAGCCACGTCCACCGCCACGGTAGGGCTGGCGATGC
CTTGGGAAATCACCAAAAGTCTGCACAAAGATAACCATCAGAGACAGATAAATAGTGTGT
CAATAAAGAAAGAATATGGCCAATCAATGTACCTCTGTGTCCATTTTCCTCAGTTCTGAA
AACCTTGGCCTTCCGTTTTGCCCTCCGCGTCCAAATGTTCCACCAGAAAGGGAATCGAAA
AAATCATCCTTGACATAGACAGGCTGGATACAGGATGAATGACAGGTTGATATTTTGCCC
CAATAAACACAAAACGTATAACATAAGAAACTATCAAACCTTGACATCTAACTCTGGATT
ATCTGTTTCCTCATACTCTAGGTCTTCATCAAATACATCATCTCCTTGGTCGCCATCTTT
ATCCCTAGACTGAGATTTCTTACCAAGATGGCCCCATACTTCATCTTTGTTAAACTTCTC
ATTCATGGCCATAAAATCAAACTCTTCAGTAAATTTTGTTGACGCTTGCGACAACTGCAC
GACAAGAAAAGAGAAAGCATGAGTACCGCGGTCCTTACAAGCCAAACATTCTTTAATAAT
TCTATACAAGAACATGTAAGCATGATACAAGAAGGTCGACCTCTTCACAATAAATAACAG
GGATAATGTCTACATGTATTTAGGCCTAAATATAGTGAAGGGCTTCGAGTTTCAGCTATT
TGAGTTACAAGCTCCTCTTCTCCAGGGAAAACCTCACTGTCACAGACATAAATTAGAGGA
GTGTGGCCACCCACCAAAAGATCAAGACCAACTACTGATCAATCTCATGCAGGAGATAAC
ACTCTGCAAACGAGAACTAAACAGACTATGCTACGCAAACACACCGCACCCCCTCTTATA
TGTACCCTATATCCTACATGTCACTTCTTTTTCGTGTATGTACTATTTCAGAACATGTGA
ATCCCTAACTTTATACTAACAAAATGAATTGAAGCTAAAAGGTAACAGAAAAATATGTAC
AGTATTACTGATAAACAAATTTTATTGAGATATAGAAGTGCATGCATGCATCACAACTAC
TCCCTCCGTTCCTAAATATAGGTCTTTTTAGGGAAATCACTAAGGGACTACATACGGAGC
AAAATAAATGAACTATACTCTAAAGTATGTCTATATACATTCATATGTAGTCCGCAAGTG
AAATCTCTTAAAAAACTTATATTTAGGAACGGAGGGAGTAATACAAGTATTCTCTCAAAT
GTGAGAATGTAAAATGGTAATGTACTAATAATCTACTTTTGACATAGATAAAATGAAGGC
ACCCAAGATAATTTGAATACCAAGTCTGTTTTAAAAAAATATGAGCGATCCAACTGAAAT
AAGAAATCCACAACAAAGGAAAATTGCAGACACCAGCAGAGGTACAGATGACAACAGCAC
GATTAATATAGCATTCAATATAGACAACGCTGACAAAAAAAAGATATACTGGAGCGCATG
TAGCATACCGCACTGCCTCTACCCCTTCCACGGCCCCTATAGTTGTGGTGGCCCTGTGAA
CCAGCTCCATTGTACTGAAAATAAAGTAAGGGCAACATAATAAGAACAGGCATAATAATG
AGCACAGAAAGATAAGACAGGATGCTATGAGATTTCAGAAAGTTGTTATGAGGACATATG
CCTAGTAGGTTTAACGATGTTCATTTCAAAAGCAAGTTTAGTGTAAGGTGTAAAGCAAAA
GCAAGAATCCCTTCTTTTGCATTAAGAAACAAGATGATTTGAGGTGTACATGACAAGTTG
ACGACATCTAAACTAGATGTAATATTTTGCTTTACTGGTCAGGTCGATAAGAAACTGAGA
AATATTTCAACTTGAGCTAATGAAGTGTGTTTCAAGGAGGTTAACTAGACGCTAAACTGG
TCAAGAAGGCAATAAGCAGCCAAATTCAAAAACCTGATTCCACATTTGATCGTTTTAACT
GTATGGTAGTAAACAAGTTGCGAAGGATCCAGTATTATCCTCTAACAAGTTTTCAGGTTT
CTCACTACCTTCAAAGCTTCAAGTGGTTAATGATGTTCTGAGTTGGATAAAAACACCTAC
AAAATACTATCTATCAATAGTTGCTGCTTAAACATGCCAGCCACATGAAGCCAGACAATG
ATGGTGGGTTTCAAGCGACAACCAATTCACTTTGGCAAAATCAAGCAAGTTTCTCATGAT
AAGCCCACCAGGCGCTGATTATATACTACTCCCTCCATCCCATCAATTAAGAGTGTTTTC
GACACTACACTAGTGTCGAAAATGCTCTGATATTATGGGACAGAGGGAGTAGATAACTCT
TAAGAAAGAAAATCATGTATCTAAATGCATGCAAATAAAATACAGAAATGGTGGTATACC
CTTTGTGGTGTCTGTTTTGGCAATGGCAATATAGGCTCATTATTCTCTGGCAGAGCGCGT
GTCGGAGGATCAGGTAGCAGTGGTTCTGCAACCCTTGTTTTGGGGTCAGCAGGCTTGGTG
ATGTTGTTGCTCATTTGTAAAGGTGTTTGCATGGACTGAGATGATGAAAGCATGGATGGA
GCATTCTGCAATAGCTGGCCAGATGATGCCAACAAAGGTGCCGGTATCTCCAATCCAGCA
AGACTAGATGAAGCACTAGTCGAAGAAATTGCCTGGGGTGCTGTTTGGTACAACAGTGTT
GAGCCTGAATTTACAGCAGGAGTCTTACTGCTAACAAGAGAATTTAAGTTCTGCGATGCT
GTTGCACTAGTTTCAGTCATGGAAATTGGCTGACTGGCTACTGGAAGAGAGGCACCATGA
GACGGCACCGGAGGAGTAAACAGAGGTACCATGTTTGGCAGCAGAGGCTTTGATGTTTCT
GGACCTAATAAGCTAGCAGAAGGTGCCGTTGTAGCAGGCGTGGCACTTGAGGAAGGACCT
TGACCAGTAACAGATGGTTGCAACAAGGGGGGCCCAGATGGTAAAGATGGATTCAGTCCT
GGATATTGGAAAGTCTGTGGAGCTGATAATCCGGGCGTGGGCTGAAGCATAGTAGGTTGC
TGCAGATGAGATGGAAGGCCACCTGGAGGCGTATAGTATCCCTGCCAATACATTGGCGGG
ACTGAAAGAGCAGAAGCATTTCCAGCGGGAGGTTGACCAGAAGAACCCCATGGATTATTC
CCTGGCTGATATAGAGGAATGTTACTCGGGAAATTTGGCCTCTGAAACCCATATTGGGCT
GGCTGGGAGCTGAGGTCCGGCAAAGCTGCACCACCAGCAGACTGCAAACTTGAGGTCGTC
GATGATGGAGGATAATGTGACTGCAGAACAAAATTGAATCAGTCAAGTGGCCCTTAAGGT
ACAAGACTACAAGTTCCATGTATTTGCATCATATCAGTACCTGGATTATGGCAGGATCAT
TGTGCAGGGGAGCCGGTTGTGGTTGTGGTGGCGGCGGCGACGACTTAACTTGCAAATCCT
GCAGAAGCAAAGTCAATCGTCTGCCATCCATGAGATATTATGACAGTAACACAACACTCG
AATAGATAGATAATAGCAGATACCATAAATGGCATGTTTGAAGTAAAAACACCACAGGTG
TGTACTAAGAACATGCCATAGATACTACATTAATACATTACCAGGGTAAAATCTTCTCAC
TGTCTAACTAAATATTAATACATTGCCAAGATAAAACCTTCCCACTATCTAGCCATCATG
ATATCATTTACGGAATACTTTTCTGACTAGCTCAGATCTCAAATATATCTTAGTTGGGCC
ATATCCAAAATTAGAAACATAACATGGTTTTACAAATTTGTGTTGGGATTTTGGCAATTT
AAACAAAAGGCATGCCCAATATGTGAAGTACAACATAACCAATCATGTTACGGATTTGAC
TTCCTGTGTAACGACGAGGCTATTTCACACATGGCTGCCAGCCCGACGCTGTCTAGCAGA
CAAACAAGCTAAAAGTAAAATCCTACCAATCTGTATACAGACCGACTCAGCGACAGGAAG
TTAGCTGCAACATGACATGATTACTCGGAGCATGCAACAACAAAACTAGAGAAGACAAAA
AAGGGCACTATCCACGGTGCCACGTACCTTGATATCGCTTCCGCGGAAGAGGATGTACTC
GTAGACTTTGTCGCTAGCGGGGATCTGTATCCCGTCCTTCTTGCGCCCTTCGGTTCCAAA
CGACCGCACTAGAAAAAACGACAATTGGAACAGATGTTAATCCGGCAGCGCCATACAAAA
TGTGGGCACGCCACGGCGCGAGAAGCGGCAGGCCAGCTGCCAACCATCGCAGACGTGCCG
CTTCATAATTACAGCATACCATGTAGGAGGATGTGCGAGCGGTTCGCTTGGTAAATCCTA
GCATAAAAGGCAAGAAGAAGAAAAGAAGTAGAGCCATACTCGACACACCATTCACCCCAT
CGTGTAACCGCAGGAATTGTTGGTTTCAGACCTACGACTTGCCGCAACAGGGGATACGGA
ATCGAGCATGTGGGCGCGTGACGGAGCAAAAAGCGACAAGCCAGCTGCTAAAGGGCGGGC
ATGCCAGTTGAGATGCGGCGGGTGCTTGGTAAATCCTAGCAGAAACTAGAGCCGTACTGG
ACACACTATTCACTCCATCTCGTAACCGCCCGAATTGTTGGTTTGAGACCCACGACTTGC
CGCCGCAGCAGGGGATGCCAAATCCAGGGCTAGGACGAGCGCCAGATCGGGCGCGGCGGC
GGGGGGGACCGAATCTAGGGCTGGGACGAGCGCATCTGGGGGATGGGGAGCGGCGTAAAG
GCAGTGCGGGGGGGGAGGGGAAGGGGAGGAGGGGGCTGGTTCTCACCATTGCGGAGGCCG
ATGCTGGACTCCTCGGTGTTGATGTTGTAGAGGACGCCCTCGTACCTGATCTCGCTCTTG
GAGGTGAGGCTGATGAGGCTCCCGAGGTACGTCTCCGGGGACGCCGCCCCGGCCGGCGCC
TGGCGCGCGGGGGCGGAGGAGGAGGAGGACGGCGGTGGTGGAGGCGCTTCCGCCGCCATG
GATGGCAGCTAGGGTTAGGGTGCACGAGCGAGGGGAGGGAGGGAGAGAGAGAGTGAAATG
GAAACCCTAAGCGGGCGATCCGATTTGGCTCGGGACGGATGGCGTTTCCGTTTATGGGCT
CGGGCTCCCGATGGGTTGCGGGCCCACATTCAGCAATTTCTTACGCTTCATGGGATTTGG
AGGGTCTAGTGACTTTTTTCTTTTTTAAGCATTTTGGCTTCTAGGTAGGATAGGAACCAA
TCCTTCACGTTTCAAAGGCAGAGAAACATTAGCCGAGGCTCAATGCGAAAAATGTATCGT
ATGACACCCTTTTCCTATAGGTATAACGAAATGAATATGGTGGGGTTTGTTGCGTTCATT
TCAAAAGCATGTAGAAGGGAAGGCTTTCTAATGGAATCCCTAGAGATACTAAGGGCTGTT
TGGTACTGCTCTACTCTAGAAAATTCAGCTCCGCTCTAGAAAACATAAGTCAAACGGGGT
AGCTTTACGATATACAGCTTCATAAAAAAACTAGAATCTGGGGTCCAATTTCCTGTTTTT
TATGAAGCTCTCTAGGAGGTGCTCCATAAAATTGTAGAAGCTGGAGTTGGAGCGAAATTA
CCCACCACTACCA