morexGenes - Barley RNA-seq Database

Contig contig_42705
Source Contig contig_42705
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42705 (7562 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42705

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58483	1	1230 bp	AK375020	Available	Available	None
CDS Structure of MLOC_58483

Contig Sequence (7562 bp)

>contig_42705 7562 assembly3_WGSMorex_rbca.fasta
CACGGCGGGCGGTCGCGGTTGTGATCGCGGGCCCCGCCGATCGCACCCTCCCCTCCCCCC
TCGAGGGGGAGGGGTGAACCGGCCGAGGTAGGAGAGGACCGATTATGTTCTGTAAATTAT
TTTACAAAAAGACCGAGTGCTATGGCAGAACACCATTTTTACCTTGCATCCACCATATGA
TTCTAGCTCGCATAAAAAATTATGACATTTGTGGTTGTGGAAATGAGATGGAATGTAAAG
GAATGATTTCGAATCTGGGCCTTTCAAGTGTTTGGTTGTGGACTTGTGGTCGTGATTGAA
CAACTTGGATTGGGTTATTATGTATGTGGCAAAGAACTTTTGTGGGCAATAACATACATG
GTTTCGTGGATTGGAAATACACTTTAATTATGTGTTTTTGGATGATGTGTATGGTTGTAT
ATTGATTATTGCTATCTTGTGAAAATGGCATTGAAATGTTTCTTATATGTGATGTCATAT
ATATTTGTTATGCTTGTGAGTGTACATTATCAATTGTTTTTGTGGTATCAGTACAAATAA
AATGACATTAAACATTTGAATAACATGTTGCTACAATTACAAAGAGCTATGATTATTGAG
ATTGTACATCATATACATATAAGAGGAAATCTCATCATTCCTATGCAACACATGAGCCCA
ATTAAATTCTTGAATGTGGTACCAACCTAGCCTGTGAATGTTATGGTTCCATTACGGTGA
CATAACTTGGCTTTTGTTCCGTTACATCTAATAGTTGGACTAGAAAATTGAAAGGAATAA
ATAGGTTAGTCGTCCAACTAGTTCCTCGCATGCATCATCCACGTAGTGTTGCTAATATAT
TCGGCAACTGGTGACATGGTATTGAATACGGGTTTAGAATTCTTCTCATGATGGAGACGC
TTGTCATTATTTGGTTGCTTTTGGCTACGTAGAAATAATAAGGTTTAACGATAAAAGTAT
TTCTCTTACGCAGATTATCTACAGATGTACTCGTACACTCCATTTATGGTCGTCTCTACA
ACATATGGAGAATTGCAGAGGAGTGTACACGCTTGATCACGGCGAGGAATACTTTTATCT
GACATGGATGGCAACATGATCTTTTGATTGGCCTTCCTACATCTTAGGCGTTTATAGTCT
TCATATGATCACGTGTATTTCGCTTTTGTTTTTTTGGAAACGATGGCTTGGTTATGGTGT
ATGCATCTCAATTATGCAAAGAAATATTTTAAGTAATAAATTTTACTTTATCAAAAAAAT
GGAATGGAACATTTTCGCTTTGATGTTTGGCTAGAGAGATGGAATGAAACAAATTTGATT
CAACACACTTCTGAATTTTTGACAACATATTATTTGAAATTTTCATAGCATTTCATTTGT
ATTTGCAATTTAAACAATTAGCAATGTACAATCACAAGCGTAACAAATATATGTCATCAC
ACATAACACATTTTCCAATACCGTTTCATAATGTAGTAGTATTGAGCAACCAAGTTTATT
ATAGGCCGTACAAACATGTCATTTTGCATGAAGACACAACCAAATCGTGAATTGGTGTTG
GATGCACCATACACAAAGAATCAATACATGTGGAGTATATCTCGCCATGGACAGCCCAGC
CCGACCCGACTAGAAAAAGCCCGACCCGGCCCAGCCCGACCTTGCCCATGGGCCGGGCTC
GGGCCTGAATTTTAATCCCGGAGAGTATTTCGGGTCGGGCCTGGGCTTGCTGTTTTTTGC
GTTTTAAGGAAGGGGCACGGCCCGAGGCCCGAAGCCCGATGGAAATTAGCCGTGATGGGC
CGGGCCTGGGCCAGAAATCTAGTCGTCGGGTCGGGTTCGGGCCTAGGTTTTCTACGTCGG
GCTTGCTCTGGCCCGGCCCGAAGCCCGGTCCGGCCCGAGAGATGGCCAGATATAATGTGG
AGCTCGACATGAAAAGCCAAGCTAGGGAACCATGTATGATGGGATCATCCAAGCGGGAGG
AGAGAAAAATGAATTGTCATTTTTCATGATGTTGTTGTTGTCGACCCCATCAGTTTGCGA
CTTGCGAGGATGCTGCTCTGCCACCGCCTAATTAATTTCCGACTCGACGGTAGTCAGCTT
CCCTCAAAAGATACCAATACCATATGTCCTTATTCACAGGCTGCAACCCCCCCCCCCTCT
CACACACACACCCCTTCGTCCCGTGTACTTTGCACTTATATAAGATATTTGATTTTGCGC
CCAATCCAAAGTTAGTTCAATACATATGACCGATATTGAGATATATTTCTGGTCACCTCC
CTCCGCCTTCACAAATATAGGGAGAAGAGGCGAGGGGTCGTTGTGTTTAGGATATACAGT
AAGAGCATCTCCAACCACGTTACCAACAGGCCCCTCGGGTCATTTTTTAATCGTCGGCAT
AAAAAAACGACCTAGTTGCGTCCCCACGACGCCGAATTCCACCGCTCGGTCCCTTTTTTT
TTGCCCGACAATCCCAGGGGAACCCAGCGCACAGGGGATCCAGCGGAAGGAAAAGTGGCG
TGTGGGCCACCACTGTCAGGCAAGAGACGTCTTTTCCCCGTCCAGATTCGCCCCGCGAGC
GGCACGACGACACTTCCCCTTTCGCCATCATGCCGATCCCGGCGCCACCCACCTGTCCAC
AACCGTTGCTCCGCCGCTAGAAAGGTCATTCCCCCGTCGTAAAGAGAGTGCTTTCGCCGC
CATCCCGCTCCTGGGCGAGCTCTTCAGGGCTCTGACCACGCAGGCGAGGATATCGACGGT
TGCCCACCCACCACACCCGTGAGGTGTTCAGCGATGGACTCCGACGACGAGGAGGCGTTC
GCGGCTCTAATGGAGGAGGAAGCCGACGCCGACGCCAACGACGAAGAGCACCTCATGATC
CTCGCCGATCTGACCAGCCTGTTCGTGGAGAATGCAAAGCCGCGGCGATGTGACCCGGCG
TCGGGCCACCGCAAGAGCAAGCAGGGGAATCGAATATGGATTGTATTCCTCAGTATGCAG
GGTCCTTTTGCAGTCGTTGATCATTAGCTACGGACAACATGAGCAACCGGTGCATTATTA
AGTAGTTATTTCCGTGACATGGTTTCACGTCTAGAAAGAATATTCTTCTACATGGAACAA
ACTCTTTCCATTCTACTAACACATGAATAGCTGCCAAATGTATAACCGACACCCTCGCAT
TCCGGCACATGGGCTCAACCAAACACGCTCTTGATTTGTCTACCAAGCACATCCTCCATC
AGGAAGAATGTATGAACGGGCACGATCTGTGTTTCTGTACATAGTCCATCTTATACAATT
ATAAAAATTGCTGTGGCGACTTCCTTCCCCAGCGGCTCGATCGTTCCTTCAACGCTCGAG
CTTTTCCTTCCTTCCAAATTCTCCTGCCCGTGTTTGATTTTTGATCTTCCCATGTCCCCT
ACCAAACCTGCACCATTTTCCCGAAATTCGGTGCACATGCGGAGGGAGACGGACGGCAGC
GGTGAAGGCTGATCGAGGACCGGCGCGAGGAAGCCCGGCCCGCTGGCTGCCGCCGAGCCG
ATGACCACACTGGTTCCTCGCACTCCGTGACAAACCTCCCGTGACGGCCGCTGCAATGTC
ATGCGCAAAAACAACCATTACTTTCCCTTGCTTAATTGTTAAGTAAACGGCGCTCTCGGT
CGCCATCGTCCACGAGCAAGCAAACCAAAGCTGAACCTGGCAGCGCGACGACGACGTCAA
AAAAGAACCATCTTTTAAGAGGGACGTACGTAAGTATTTTTAGAAGCAGGTTAGTCTATA
TACAAGTCAGTAATTTTTTTAAAAGACGTATAGTAATCCGGTAGTACGCGGTATGCATGT
CAGGTCGCTAGCTTAGCTTAGCTTAGCCCAAACGCCCAACCAAAACAATCTTCGGGTTGT
CCACGTCGCCGTATTAAATTCTTGCGGCAGGGGCGTCACGGGGCTTGACTTGGCCAGCAA
TGGCACGCTCGATACTGTAGCAGTAGTGCAAATATAGTGGAGTAAGCATTGATTAGTCCC
GCAGAAACGCGAGGACGGATAGTGCAGCCAGTAGGATACGCAAGGCGACGTGGCCTCGCG
CGGAAAACTGGACCGGTTCCGTTCCACGGAGGGGTCTCCCGCCCACAGGTACGTACTACC
CCTCCTCGCTAAGCAAAACCGCCCGTGGCGCCACGCGACTGACTGCTCATGCCCATGCCC
ATGCCCATGGACGTCACGTCACGTCCCCTGCCCAAAACCACCGGACCAAAACCCCGCCGC
CCCCACCCCGGGGCACGGGGCTATAAAGCCGGCGCCACCACGGGCCGGACGGCAACGGCG
ACACGCACACGCACGCACACACACACACTCACTCCACGCTCGGCCAGCACAACAAGCAAG
TTCAGTTCAGGTTGGGGGATCGATCGGATAATGGCGCCGGCGCCGGTGGAGTTCGTGGGC
GCGAGGGAGGCAGGCGGGGTCGGCGGGGACGCGCTCTACTGCGCCATCATCCTGTGGCTG
TCCGTCATGTCGTGGATCATCTTCACCTGCGTCGGCGGCGACGACGGCGGGAGGCGCGGG
AGGAAGGGCCGCCGGGACACCAAGGTCTTCGTCGGCGCCGAGCGACTCTGCGACGGCACC
GGCCCGCGCTGCAGCGGCGGCTACGGCCTCTGCGGCTCCTGCGTCGACTAGCCAGCCGCC
GCCCGCCCGGCTCCTCCAAATCGTACGTTTGGTTGGTCGGTAACTTCGTGTAATCGGGCG
TCAAAAGTAGTATGATCATCTACTAGTATCTATGGTGTGATGAACAACTCCTTTTCTCAT
GCGAGCTTCTTGCAGCCTGTACATAGTTTTAGCGATCGTTGATCGTTGATCAATGAGATG
AGATAGTATGATCTGGTATTAGTATGATGAGTATCTCCCCTTTGTGAAGACAATAAAGAG
GGAGCTAGCAGCGTCTTCCGTCTGATCCTGGTTCCCGGTTTGGCTGCAACCTGCAAGAAC
TAGTCTCGATTCTTCATCTTCTTCTCTTCCTCTCGCTCGATCATGCGCAAACAAATTTCT
CAATCACAACAAGCACTTTCTCTTTCGAGTGGACGATTTGCGTTTGGTGTGGTGCTACTT
TCTGTTGTGGAGCATATAATTGATTGCCGATAATTGCAGAGATATCATTTTCAAGTGGAC
TATCTGCGCGTGTTGGTTGGGGGGTTGGGCGGATTTAATTTCCGCGATCCAGCCCAAGCT
CTGGTACTGGTGGTGGTGGATCAGGCGGCAGGAATTAATTGCCGTGGAGCGAAATCCGCG
GCCGTGTATAGTAACCTGTGACTGTGACACCCGGGAAGATGAGCTTATCGTGAACGTCAC
TGCAAAGGCGTATCCATGCTAATTTCATGAAATTGCTACTACATTCCCACAGGAATGTAG
TATATAATATATATTTAGCTAGTAGTTAAATTGACAACCTAGAACTACGCGCATGTCCTA
TACACTTGAACGGAGGTAGTATTATTATTAACTAGTGCTTGAAAACCAACAGAAGAACAC
CAAGGGGATGGCATATCACTTGGGTAATTGGTTGGACGATTGTCATCTCAAAGATCAGGC
CGGTTTGGAGTGTTTCTCTCCTTAGTTGGTTTTGGAGATTAGAAACTAGAAAATGAGATG
GGTATGTTCAGAAATATTTGTTGGCTCTGTGCGAAGATAAGCTTGGGCAATCACACTTGT
GGCAGAAACTTATTTATGCTGGTAGTAAACGACATTTTTGCTAGTTGTTGTCGTAAGGTA
GTTGGGAGTGGATCCAGAACTTGTTTTTGGAAGATATCTGTATTGGAGATAGGCCCATAA
GTTGCCAAAAATGAAGAGATAGATCCATGTGTAAGTTGTTTCCTAAACTGTACGTATGTG
CAACCATCTGCCTGCTGTTTGTGATGGGGCAACACTGTCAGAGGAAAGTTATGCGTGTGT
TTGGAGACTTACATATGTTCTACTCTCTCTATTTTTAAATATAATCATTTTTTATAATTT
TAATATAAACTACATACAGAGAAAAATGGAAGGAATCTTAAAAACCTTATACTCCCTCCG
TTTTATATATATCTGTACGTAGTTCATATTGAAATCTTAAAAAATCTTATACTCCCTCCA
TCCCAAAATTCTTGTCTTAGGTTTATCTAAAAATGAATGTATCTAAATACTAAAACATGA
CTAGATACATTTATATTTAGACAAATCTAAGACAAAATTTTTGAAACGGAAGGAATAGTA
TTTTGTAAAGGAGGGAGTAGGTGAAATTCCTTTATCATTCCTAAAAATATAGATCAACGA
TTGTGCCATGTGCACAAATGTGGGAGTTGGATTTAAACTTAAAGGTTGAAGTCTTTATTG
GTTGATTAGTGGAAAGAGTGTTCGCAGGAGATAATTTTTAGAAAGTGTGGCTGGGGCAGT
TAAAAAGATTTATATTTTATTTGAAATAGAAGCAAAGTGTTTACATCATCCATTAACTAT
GAATACCCGCACAAAAATTCATCAACTAAGGAGTAGAACAAGAGTTTACAAGAAAGTACT
TCCTTCGTCTCATAATATAAGAGTGTTTTTGACAATTCAGTAAAAGATTATTATGAAAGG
CAACTATTGTCACGGAATTGGGTGCCCTAAATGTTTCACCCACCTATGACCCAAAGACAA
TCCTCACTCTTGATGGAGTTGAGGAGAAGGCTAGTAGGCATGAGTTTTGTGCGGAAAACC
CTTGCATTTTCTCTGTTCCAAATGTCCATCCAACAAGCATCATGAAGAAGACCATACCTT
TGTTGGTCCACTAATCCTTTATAGATTGCTCCGCCATCCAAATGAAAGGGTCCAAGCAAT
GGATATGGAGTCATTCCTTTACCATCTCCCAAACACGCAAGGATTATCGGCATTTCAACA
AGAGATGATCTCACGATTCCTCCGTCCTCTTGCAAAGTGTACTTGGGCCACAATTTTGCC
AACCCATCTGGCCCAAGCGATCGGCGATCCAAATTCTATGTTCGATGGCAAGCCATGCAA
AGAACTTGGTCCTCATAGGGTGCCAAGCCTTCCATAGTTTTGTTTATCTTCATATGTGTT
ATTCCCAACAACTGTGTCTTGTACACCTATGATATGGAGTACTTGCAATTTTTTGTATGC
TTCCAAGTGATGGTGTCCTCGAACGCGTCCATAACATTAACCTCACTAAGCTTCGTCCAA
AATTTGATGAATCGCCTCACATGCTCCATGATGAAAGCCTCTATCATTTGATTTTTCCTA
ACCAAGCATCACAATGCAACTCCTCCCTCACCTTCCTTTCCTTTTAGAAGGAGCGTAAAT
AAATAAGCAGGTGATGTCTTTCGGCTTACCACATGCAACCACGACGAGGCCCAAAAAGGG
GCAATGGTCCCATTATCAATTAGAAGGGTAGAAAAAGTCCATGACATCCTCGTCGCATGG
GTGTTCCATACCAAATCCACATCTTGGATGGCCCTCTCCAATCGTACCACGGCCTACACA
ACCATATAGCCCTCTTAAACTTGTGAATGGGGAGCACGCCGAGACCCCCCCCCCCCCCCC
CC