morexGenes - Barley RNA-seq Database

Contig contig_42688

Source Contig contig_42688

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_42688 (6167 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_42688

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58458	1	626 bp	None	Available	Available	None
MLOC_58457	1	450 bp	MLOC_58457.1	Available	Available	LOC_Os05g49690.1, FRAME:-1, EVALUE:1e-17, 13105.m05320 protein hypothetical protein
MLOC_58459	1	885 bp	MLOC_58459.1	Available	Available	None
MLOC_58456	1	502 bp	MLOC_58456.1	Available	Available	LOC_Os01g58590.1, FRAME:+2, EVALUE:1e-11, 13101.m06221 protein expressed protein

CDS Structure of MLOC_58458

CDS Structure of MLOC_58457

CDS Structure of MLOC_58459

CDS Structure of MLOC_58456

Contig Sequence (6167 bp)

>contig_42688 6167 assembly3_WGSMorex_rbca.fasta
TTTGAGGGTTGGACCTCTAATTTTTTTTACGGGTTTGAGGGTTTAGGGGTTCTAGTCTAC
CGTTTTTTTTTGACGAAAACTGTAAAAAAAAGTTATTTTTAAGGGTTTGAGGATTTGAGG
GCTCTGCTAGACTTGTTCTTATGTATCGCTGCCCTGGTCTGTAACCACCAGTCCCGAGTG
GACGTAAAACTCTCATCTAGAACCTGAAAGTCCGCGTTGGTCCAGGATTTAAAACGCAAC
CACAACTGTTGCCTGAAGCGGCAGTGAACGAACACATGTGTGCAGTCTTCAGGTTCAAAT
AAACAAAGTGGGCATGAGCCATTGGATGGCCAGTTTCTGCGCTCCAGATTATCCGCCGTC
AGACATCTGCGAGTCTTAGAGAAGCGGTTTGGCTCTGGGTGTTCCACGGTTCCACCAATA
ATATAAGCATTTCCTTCTAATCTTTGTTTGGTTAGAAATACAGGAATGCAACTAAAAAAG
AATTATACGAAAGAAGGTACACTGAATATTAGCAACAGTTTCCTCTGTTTGGTTGAGAAG
TTAAACATATGCTCCAGCTCAACCAAATCCCCAAAGATCTGGGCTAGGCCAAGGCATCCA
TGATTGGAATGTTTGGAAGGATAGCAGAACCATGATCCCAATTGAAAGCATGTACTGTAC
ACCCATAGTAGATTTGTTTGCTATATACTTCCTCCGTTCCTAAATATATGTCTTTTTAGA
ATTTTCATTAGGAAACTATATATGGATGTATATAGACNNNNNNNNNAGTATAGATTCACT
CATTTTACTTTGTATGTGGTCTCTTTGTGAAATCTCTAAGAAGAGTTATACTACCTCCGT
CCGAAAATACTTGTCCTAAAGATGAATGTATCTAGGCTTATTTTAATTATAGATACATCC
ATTATATGCATTTTTAAGACGAGTATTTCTGGACGGAGGGAGTATTTAGGAACGGAGGGG
AGGGAGTATATAAGAGTAATATAAGCCGGAACTAAAATCCTACCGTACGGCTATAGATTG
TGCCAGTTCAGTAAGATTGCGTTGAACTAAAGTCTTGAAAATGGTCTTGACAGAGAAGCA
TCACGCAAGAAAAGTAAATAAAATCCTGTTGATAAATTATCTTCATGCGCGATCATTGAA
AACAAAGGAAATCGCTAAAATCAGAGAAGAGCGGGCTGATAAAAGTAGTCCGAACCAAAT
GATCACATATCCTGAACTCGCTCGATCATCACATCCGCCGATAGCAGAAAACATAAAAAA
AAACATGGGTAGCAACGCATGTTGCATACATAGTTCATCGACATACATGAAACATGATTC
CCTATGACAACTTCCTACTGCAGGTGACGGACCTGAAAATGGAATGGAGCACCGCCTTGC
CCGTCCTCCTTGCCACAGCCCTCCGCCGGGACCCGTTCTTGGCCTTCGCCGCCGGCGCCG
ATGTCCTACTCCTGCTCCTACCCTGTACCGCCGGTTCCTGTGCAGACGGCGACGCCATGA
GGTGGTTGTCGAGGACGCGGTAGACGAACGCGAGCTCGACGGAGTCGTACAACTGGCTCC
CGCAGTCCCACCCACGGCGGAACACCGCCGCAACCTCCTCCTCCCCCTTCCGTTCCTTCC
GCTCTCCTTCCATCCCTGCCACTCACCGTGGAGCCTCTTACTACCTTGTTATTATACCGT
CATCGAGCGAATCTGGCCCGATCGAGAGTGTATGAGCTTTAACTTGTTTCCCATTTTAGT
CGATGTACTGGCTGTTGAACGCAAGAACATTTATTATGACAGATCCGGCATGGGAGGAGA
CAGCTCAACGCGTTGGGATTTTTTGATGGGTGACAGGTAATAACGTGTTTCTATCTCCTC
ATTATGGTAAGTAGCAAAGAGTCGTATCGTTCCACATTGATCCCCAGGTTGTTTTTAGAC
GTCTGAAGTTGGTTATGAACATGTCAACATCATCTGCCTTGTCCCTGTACGTTCACGTAC
TCTTACTTCCACATCCAAAACGAGCAAAAATGATGGATGGGAAGGATCACCTAAACAAAG
GCCTGCACGATCTCGAAATACATTTCCTCTGAGCTACGAACTCCACGAGTAGCTCTACGC
GTGGAGGACAACACCTTTTGAACTGGGACAGATTCTGTGTGTGTGTGTGTTTAGAATCAA
CTGGGACGGAGGCGTGGAGGAACTGTCTTGGAAGTGTCTTTAATCTTTTGAATTTTCACA
TGGCATAATGTGTCGTCAACGTCTGGGCCTTGACAACTAGTGGGTAGATGGGCCAGACGA
ACAGAGAAACTCTTTCTCGACTCCCTCATCGTCCTGAGTCCAATACGAAGAGCAAAACAA
AGTGACCCCTGTCTAAATGGTCCGTCCCAGACTCCCAGTACATTGTGTCCTGTATTTCTC
TCCGGTTTTAAGAAGGTCCTGAATGTTCTTCTTTCCTTTTTTAATGTGTTTAGCCTGTCG
ATTAAACCTTTTTTTTTGTTTGCTAAAAAAACAGTTTTTTTCGTTTCTAATTTTCTGTTT
TATTTGCTTACAGTTGTTTTTCTTCTTTCCATTTTTTTTAGTTCCCATCCATTTTCAAAG
TTCAGAAAAAGTGTCAATTAAATATGCATTGTAAGTTTGGGAATATTTAAAATTCAAGAA
GTTTTTTTAGCAACAATTTTTAAATCTGTGAACATGTTTTTAATTCATGAACCCCTTTTT
AAAATATGGATCTGCCGCCAGGAGGCCACACTCCACACTCCAGCTCGATGTGGGGCTTCT
CCTCGAGCAGCGGTGGAGTGGCTTCGCTATGTGAGGGTGCATGTGCGCATATGAGGTTCT
TGGAACTTCTGTGTTCGCTCGTGGGCACTCGTAGTGCGCCTGCGCGTGGGGGCTTGATCG
AGGATGGGAACCGAGGTGGTTCATGGCCAGGAGGTCATTGCCGACGTGATGCTCAGCAAG
GATTGGCGGAATATGATGCGTCCGGTGATCTGGACTCGGGTAGACCGGTGATGGATCCAG
CTGTTGGTGTTGGTCGGCGACCTTCGCAAGATGCAGTTGGTTGCTCCGATGATGGATTCC
TTCGACTATGAGCCGACTCGGTGGAGGTTAGGTGGGCGCTGGTTCGAAATGATGTGTGGA
TTAGGTGGTGTCGAGATCTTGGGATGAAAACCCTATTACAGTTGTGTGCCCGTGACCAGC
GATCTATTGAGAAACGTAGTAGAAAACAAAATAATCACACTAGGATAAAGACCTCAGATC
ACTATGAAGATGCATGCAAGCTTTGATCGGATCGTCACCAACTTCGAGATGCAGTAGAAG
AAGAGTTGGTGTACATCGTTCTTGAAATTCCTCGAATCGTTCACGACGATCCCTCGAACA
AAAAGGCTCAAAGCATGGCCTCTCTACAAATTGCAAGCATACAACCTTCACGATCCAACA
ACGCTTCGTCGTTCAAAGCTAATCATCGCAAGAGAATTAGATGGAGAAGAATAGACCCAC
ACGAGCGGTGGTGGAGCTTCATGGGGCCAACCTAGGCAACTTAGATTTATCCATTACGTT
TTGTAACCTTCTAGACATCATAAAAGTACCTAGGACCTTCCGAGAACCTCCTAGAACATT
TTTGGAAACATCCAAAACTTTTTTGGAACTATTTCTTATATTCCCGGAAATATTCCAAGA
ACTTCAATTCCTTGGTTTGCTATGTATGCTTTATTTGCATCCAAGATAAATGAGTAGTCC
GGATGGACAAGCCTTATAGCATTCAAAATTGCTATATCTGAGTTCAATTTTTTCCTACTT
TTAGTTCAAGGTTCCAAGCCCTTGTCCTCCTTATTTCGCGTCCAATTGAAAGGCTTCATT
TGGGGTCACAATTGGAATCTTATTTTCAGAAATACCTGACTTAGGGAAATTCAGTTAAGC
AAGTCGTGTCTAGGGAGGGCATCGGCCACTTCTCATATCACCGCGCACTCCGGGCTTGAT
GGGTGGATCACACTTATTCAAAAAGGCTTTCATCCCGTTATATATATAAAGCAACAATCA
ACAAAGCGGTACGAGTGCACGTCACCACAATACACGTATACACCCAAGACAGGATACATA
CAAGCACAGCAACACCACGCCAAGCACTATTAAAGCAATCGGGGTCTTCATCCATGAACT
CGCCACCGCAAAGGGATGAAGCCACATATGATAAATCCTGGGCTCCAAGATGGTGCTTTC
TAGACCGAAGCGCCGCCGCTGCCCAACCCGAGTATCAGAATTTCCCTAGAGCAACAAGAG
GGCAATGAGAGCCGTGGCGACACCTCAAGAAGGGAACGAGCTTCGTCGCCGCCAATCCAT
TCGAAGATAGAACATGTTCTCACCCCGACCAACACTCACGGTCACAGAATGCCACACCCC
GACTATCACGTCGCCCATGAGTACCGCGCTGCCTCCACTAGGGTTGTCGTCCCGACCTTC
AAGACCTTGACACGATCTTACCCGAGACCCACCACTATATCAACCAAAGAGACGAGCTAA
AAGGCTCCACCGTTCGCATCCCTGAGCGCCCCCAGCGCCGAGACCCAATAAACCGATCAA
AACTAGCCTCCATCGAGCCGTCTTGCATCACCAGGCGCGAGACGAGCTGTGTCCAACTGT
CTAAGACTCCGGGCTCCCTGGGTGATTCACACTTCAAATGCGACAATGCTTTGTTTTGGA
ATTTGCGGTAGGTATTTCAACCTCGATCGTATGTCCAACTGCCCACCTGCATGTATGACG
ATTTCGTTATGGCCAATATCCTCGCGGTGCTGATTTGTCGCCTAACATATAAAGTAGTAA
ATTATATTCAAGAAGAAGACAATAAGTCATGAGTTGTCGATGTATATCCAGTATGCAGCA
CCACAATAACGACATGATTACTTTCCGCAATGTATATCCAATATACTCCATTGAAAGAAG
ACAATAAATCGTGCCTTTTCCTTGACTGTATCCAGTATGCAACACCTCGTTAGCTAGCAT
TCTTATCTTCCAAACTATCATACGAAAATCTGTTAGTGGTACGGCGATATCCTCGTGGAT
CTGTCAAGCAGGCACTGCCGTGTGGATCTGTCGTGTTTGCAAACTGCCGATCAGCTAGCA
CACGCGTTCTGCATGCATGCATGCATGGCTGGCGATCGTTGCGCCTATATAAAGAGCAAT
CCCTGAGGTCTGAAGACCCAGTGTGACACAAGAAAAGCATCTCTCCAGGAGTAGGAAAGA
ACTATCTTCAGTTTTTGGCACTGATTTGTGCTCGCTAGCAAAACAAGAACCGATCGAGAC
CATGGCGATGGGTCACCTCCGTGGCTTTCTGGTTTTCATCCTGGTGCAGGTCTGCCTGCT
CTTGATGATGGCCGCGTCGGCCAAGGTGCAGGGCAGGACTGTGGCCGGAGTTCCCGCGTG
CTGCTCCTACCGCCCCGAGTGCTGCGAGCGCCTGACGGCGGAAGCCCCCCCCGCCCCCGC
CGTTATTCCGTGATGGCGCCGCCTGCGGGGGTCGCTCTCCTCCCTAGAAATGTGTCCGTG
ACGTGAGCATACATTCTACTGGATCTGCAGTATGCATACATCGATATGATTCCGCTGCTT
TTTCATGTCTCTATATATGTTTCAGAACTTTTGATTCCATGCATGTTGATGTGGTCATGT
GGAACCTTGGATAATAAAGTTGGAGGAGGATATTACTGTCAATTATGAGTTCTGTGACTT
CTGTCCCCAAAAAAAATCTTCTAGTTGGCACGTAATAATGCTTTGACCAGCGTGGATCCT
GAGGGGAACGAAACTTGGGATGTCCCAAATTTCATGTGGTGTCGTCTTGGGGCGTAATGT
CTTTTGTTCCCCCCAAAGGTCTGTCATGGTGTGGTCATGGTTGAGTGTAGCCTTTAGATT
AGGAAAAAGTTTATTTTAAACCCTGAATTGATAGAGGTCCGGTGAAATGAACCCCAAATT
AAAATCCCGATCGATTGTATCTTAAACATTGAAATCCCGGTCTAAATCGAATCCTAGTAA
ATTTCAACCCGGATTTAGATGATGGGCCGTCCTCCTTCAATATTTTTCGTTTTTTAGACC
GGCTCGCTTTAGTTTTTTTGTTTAAAAATAAAAATTTCAGGCCGTGTCATGCACGCGTCA
GCCCGCGCGATTCCGCTCCCTGCCGTTGCTCTGCTACTAGTTGCATA