morexGenes - Barley RNA-seq Database

Contig contig_42686
Source Contig contig_42686
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42686 (8460 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42686

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58454	2	855 bp	MLOC_58454.1	Available	Available	LOC_Os07g48780.1, FRAME:+2, EVALUE:2e-101, 13107.m05229 protein OsCam1-2 - Calmodulin, expressed
MLOC_58455	1	1943 bp	MLOC_58455.1	Available	Available	LOC_Os01g16230.1, FRAME:-2, EVALUE:6e-118, 13101.m01810 protein TKL_IRAK_CR4L.2 - The CR4L subfamily has homology with Crinkly4
CDS Structure of MLOC_58454

CDS Structure of MLOC_58455

Contig Sequence (8460 bp)

>contig_42686 8460 assembly3_WGSMorex_rbca.fasta
AGGCTGGGAAGGGGTTTGAGGGTTCGACCTCTAATTTTTTTTACGGGTTTAAGGGTTTGA
GGATTCTACTAAAGATGCTCTAACATGGTTCGGTGTGACGGGTCACGTGTGACCGACTGA
AAATTTCGGCCAGCGTGGCAGGGGGGGCGCTTAGCACTCGCCAACGAAGAAACAGTAGAG
CCTGCGATTTCGAGCCGCGGTCCAAGGTACGCGTAGCAGTTTCCCCTATCCGGTCGCCTA
AATATTTTCCTCCCTGTCACCTTCCTCCCTTCCTCCACTCGCGCTTCGCTCTTTTCTCTC
TCAGATCTCCGTCTCGTCCGCGTGTTGGGGTAGGAGCCATGGCCGACCAGCTCACCGACG
ACCAGATCGCCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGACGGAGACGGTTCGA
TCCCCTCTCTGTTCTCCTCTTTTAACTTGTACTACTCGTATATGATTTGCACGATCGCAT
TCGATGTGCGCGCACTCGCTGTAGTTGATGCGGTGCCTTGCACTGGCGCGTAGATGTGTT
GGGGTTGGGGATCTGATCGACGTAGCGTACATGCGTTTTGCTGGTTCGAGTTGATCGCGG
CGGGATTGGTTTTGCGGGGTGCTCAAGATGCAGTAGATCTCGCACTCCTTTTCACCGTTC
CTTGTGGATTCTGCCTCCATACATTCTTCTCTTGCCAGCGCTGTCCGCCCGTCACCGTGC
AGTATTGCTGCGCCGTATGCTCGTCCAGAACTCGTCCGTTCCGGCTGATTGCTGAGCTGT
CTGTCATAGCGAAGGCTTCAGCCGGCTGTTTGGCCGTTCCATCAGATCTGTTTCGGTGGA
GCAACCGATGACCTTGCAAAGTTCCCCAAAAAAGGTTCTACCAGGAAGAGATTGAATTAT
GAGAGAAGGTGGCAGTCTACCACATCTAACGATCACACAGCATGGCCGGTGGCACTGTTG
CTGCTGAGTCGGTTGCTAGAGCATGGTGGGTCACTAGTCATCAGTCGCTACTCTCTAGGT
GCAGCTAGAACAGCAGTAAGGAGGTGCGCTGCGATGTGGTGTTAGGGTTATAAGATCATG
TAATACCCCATAATTCTGTACTTATATGTAACTATTGACTTGGAATTTACCTAGGCTTTT
GGGTCTTTTTCTCTGGATGCCATGGGCATAGGATTGTGATAGCAATGATTAAGTTTTTGG
TTGCTTAAACTACATATTTTCTTCTCAGTGAATGCCACATCAGAGTTTGTCTGGTTTTGC
CTATCATGCTATGGCGGTGCTAGTGTGAGACTGATAACATGGAGAATGCATGTGATGGCT
GGAATAGCTATTGGTATTGATGTTTACTTATTATGAAACATTAGTTGAAGCAAATCGAGT
AACTCACATGTGTTGCCAGCTTACTGCTTGACAGAAAATATATCTGTAGTTAGTTGCTTG
CTGTTCAAAGATTTCTAGCCAATGGTTAATACCAGGGAAACGGGAGCCATGATCATACTG
GTAAAGATTGATTCACAAATTTACATTGATTAAAAGGTTCTGTTATATATTTCTTCCATG
GAAACATTGCCAAATTGCATTTTGGTTATGCAAAAAATACCTTGCCAAGGACCAAAATGA
ATGAACAAACCAATCAGATGTATCAGTAATGGTCCTTGATCCTTCAATAACACCACCATC
TCTCTAGAGGAATTGAGGAAATGCGTGGTAGTTTTGGTATCCCTAGCTTGTTGAATGTCT
TTGTTGGCGTGTGGTGTGAGGACTAATAGATTTATTGTGGGGAAGGTCTAATTGAATGTC
CTCTGCAACTTTGATTGTGTATATTTTAATATTTGAAATATTCACTAATGGTTTTCTTTT
GTAAACTTGCTGATTATGTTAAAGGCATGGCATATGGACTTTCTAGGATCCATAGGTCTT
CCCTTGTATGATGAAAATCAAGACCCATTGTAAATTTTGAGTGGATTCTCAAATATGTTT
CCAATCTGAAACTGAAAATATTCTTGCGATAGAACACTGTAGCATTGATTTGTGAAGTAC
TTGCAAGTTAAAACAAATCTTTGCTGTAATAGGTTACATGTCTTGCTCTTCTAATTGTGT
GGACTTTGGTACTGGTCAAGTTGACGAAATGTTTACCCAAATATTTTTGTGGATAGTGTT
GTTTCAAATAGTTAAGCCTTGAATGTTCTTGTGAAATTTCATCATTGTCCACTTAAACTG
TATTTGTGTTTGTTTGCTACCCTTGAATGATTTCATGCATCCAAAATTCCAGACTGCAAG
ATTTGTTGATGAACCCAATCATTGGTGCATTACTGTCTTTTGCATTAGCATATAGCTGAA
ATGATCTCTAAATGTTAAATAAATGTAAATAATATTTGTGTCCATTGAAAACCCAAAATT
TCGTTATGTTCTTGTATTGCACATGCACGTGCAAATGTGGCTTCCGGATGTATTCATTAC
TTCTATAAATGTCTACAAGATCATTTGGAAGATATATGCCCATTACAGGCACATTGCATT
TGGATGTAGCATTTCACATATGATATGGTGATTTTATTGCACAATTACTTTTGTTTTTCT
GCATACTTGTTGTTTTTTGTGTTACCATCATTTAGTCAGTGTTTCAAGTGGGGGCAAGTC
GAATCGGGTCGCACCTGACTGGCCAGGTGACTACTCTGAGTATTCTAGATTCTGACTAGT
CAGTGACTATTTGACAACTAGCCAGGCCTGCTAGTCAGGGGATTTAGATAGGCTGGCAAC
AGGTTGTCAAGTCTTACTGGGTGTGTCTGGTTTGAGCCCAAGCCAAACCTCTATTTTTTG
GCCACTGTTGGCCAGAAAATTGAAAGTGGGCTAAGGAGCATGGTCATGCCAAAAATTTGC
CAGTCCATCCAAGCAAGAACCAAAAATTCAGTCATGACCAAAACAATCGGTAGGGCTGAC
TTGGTCGCAAACCGGAATTACCCATTGTCTAAGACCTCTTTTAGTGTGCATGAAATTGAA
TTGCTGACATAAATCTCTATGGCATTTAATACTTGAACAGTATTACCTTTGTATGTATAT
ATCTGTAGAAGCAGTTTAAGTTACTAAACTGAAAACTGTCTGCCTTCTGAACAGGCTGCA
TCACCACCAAGGAACTTGGAACTGTGATGCGTTCGCTAGGGCAGAACCCCACTGAGGCAG
AGCTTCAGGATATGATCAATGAAGTGGATGCTGATGGCAATGGAACGATTGACTTTCCTG
AGTTCCTCAACCTAATGGCACGTAAGATGAAGGACACTGATTCTGAGGAGGAGCTTAAGG
AGGCCTTCCGCGTGTTTGACAAGGACCAGAATGGTTTCATCTCGGCGGCTGAACTCCGCC
ATGTCATGACCAACCTTGGTGAGAAGCTGACAGACGAGGAGGTGGATGAGATGATCCGCG
AGGCTGATGTCGATGGTGACGGACAGATCAATTACGAAGAGTTTGTGAAGGTGATGATGG
CCAAGTGAGCTGCCATAGTAAGCTAGTTCTCTCTTGATGTTAGCAGCTAGTTTAGCCTTG
AAAACTGACGGCACTTGGTACTACTGTTCAGTCCAGTGAATGAACATATTCTGCTTCTTT
TCTTCCCAGGGATGTTGAGAATTTCGTTTGGATTTTCTTGCAGTTGTATTACCTTTGTAC
AATGTAGCTTCCTTCCAAATTGAGTTCATGAATTTGCTGTACTTTATGCCTTCATGGTAT
CATTAAGGTGCATGGATATCTGATATTTTGTGTATGTGTGTGCTATCAACTTCTTGGGTG
CGCAGGACTTCGGTGTGGTTTCCCAATAATGACATAGACGCTGCAGTACCACTCACTGTT
GTTTTTTGCGTGAGGCCTTGTTCAGAATTTGGGGATGTTTTTGCTCTGTGAAATCCTGCG
AGAGTTGAAGCCGCGTAATACTTAAGTCATGCCTTCCAAATTAATGGAGTTAATTGGTGA
GCTATCATAATTCACCATGTAACGAGTCAGTATCACAATTCATTTGTAACGAGTCAGTAC
CACAATTCATTTTTATCGCAGTTTAGTATCATTTTCGGTCTAATTGTTACAAGAAGAGCC
TTAGTATTGACCATGTATCTGACCGTGCGGCTCCACCTGTCAGGTGACACACTGGCCATA
TAACTTAGTATTGACCATGTATCTCACCACTCGGCCCCATCTGTCAGGTGACACGGTGAC
CAATCGACGCGTGTTACTGTGCTGACTAGGACGAGACCGGCATGGTCGGCCTTTAGCAGG
CTTGGTCGAACCGAGCCAGTCCGCCCGACGAACCTTAGTTTTTGTTCTCCCGTCTCTCCC
CGTTGCTCTTGGACGATGGTTGCGGCAACCCCCGGCGATCCCATCTGTCAGATGACACAA
CGGCTAATCGACGCGTGCCGCTGTGCTGACTAGGACGAGGCGGGCGCAGTTGGCCTTTAG
CAGGCTCGGTCGAAACGAGTCGGTCCGCCCGACGAACCTTAGTTTTCGTTCTCCCTTCTC
TCCCCGTTGCTCTTGGACGACGGCTGCGGCAACCCCCGGCGGTGACGTGAGCGGCGGTAG
TGATGTGGGAGGCTACGTCGACCTTCCTAGCCTCAGCGATGACCACGTTGGTCTGGGTTG
GTCTGGATGGCTCCAGTTCATTCTATTACACCGACGACGAGGAAGAGGAGGAGGAGGTGC
CTCTTTTCATGAAGTGCGGCTCACTAAAATGTGGGTGGCTAACCCCACCACAAGCCATCA
TTGAACCATTGCTGAATTGTGGTAGCTCCTGCAATAACTCAAATGAATGCTCGACCATGA
AGCTTTTGCTTGAAAAGCCTCATGATTGACATTTCGTCGAAAATATTCCTTTGCCAGTCT
TCGCATATGCACAACTACTTTGCTTCTCTTGTTGCCTTTCCTCTTTTGCAAAAGATCGAT
CTGTGCAATCTATTCTACATCTTCTCCAGCGATTTAGTATGGCTCTTCTGTCCCTGTTGC
ATCTCCTGATTTAAAATTCGGTCGCCTGTATTAAATTGGAAAAGCTGGAAACAATGCTGG
AGTTTGCGTTGGTTCTCTTGTATTCTAAGAACAGTTGCTGGAAAACGACAGTGGCTGATT
TTTCCTCCGTAAACAAAAAGAGCGCAAGAAATCTCAAGTAAGCATTATTCAGCTAGGAAT
TTGTCAAATCAATTATGTCCTGCCGACCGAATCATCTACGGAGTTCCCGGCTTTATTTTT
TCTCCCCACCAAATAAAATAAACTTTTCAAGCTTGGACAAACCAAATGAATAATAGCTGT
TAATAATGAGCTCTTAATAATACCACTAGCGGATTATATTAAACAAAACAAAATAAGATG
CACCTGCACAGAAAGGCTTGCCAAATTTCTTTCCTAAGAGGGAAACCATTTTACACGCCC
ATTTGCAATATTTTCTCAATCACATCGAACTTATTCGTAAGGTTTTTTTCTTCTTGCGTT
CCTCTGTAATTTATTCCATCTTATCTAGAATAATCTTTCCGCAAAAATAACTCTGAAGGA
TTGACATATACAATGCTGTCGATGTACATTTCCTCAATGTCATTAGCTCCACCCTTAATC
CACACAAGAAGAATTCATCCCATTTTCTCACCGGCAAAGCGGTGGCATGCATCTATCATT
CTCGACTGGTATGAGCTCTTGCCAGTTTCGTCTCCTCGACGGGACGTTTGGGTTAATTAA
TAAAAGCTCATTTTCATCGAAAAATGTAGCAGAAAATTGTAAGAAAGGAAAAGCAACTTG
CTCAAGAAAAGCAGACCCTCAGCAGTATTATAATACTCCTACTCTTTTTAATAGGCAAGC
TTTAACGGGTGGGCAGTGTGTCGATGAGACTAGATTAACTCCGGCGCATCGTCCGTCATC
TTTGGGAGCTTCAGGCCAAGAACTGCCTGCAGCCAGCTTTTAGTTACACATGTACAGTAT
GTGCAGTGTGCGTGCAGTTGGAGCAAAATAATGGCCATCTCATGGCCAAAGCAAAAGCCT
ACTAACTGCCCGCTACTGCCCAACCCTGGGTTAACCCGAACGCTGAATCCATGAGCTTCC
CGTGCCTAATTTCCCAGCTTTCTATCTACTCCTATTAGCAGAACATGCCCTAGTTTGACA
TGTAGACCAGCTAGCCAGATACTACCGTGCTTTTGTGCCCCTGCTTTGATAGAGTTTCGC
AAAGGGTTCTTTGGACTTATGTGACACATACAAAGATGAAGAAATGTATAGCCGTTTTGT
TGAAGTCAAAATCAGGAGGCCCGGAGATTCAAACATGAAACATGTGGGTAGATTCTCCTT
ACAAGTTATCTCGTCAGCAAATTCCAAGACATTGCGTATGAACATGCTCAATCAAACAGT
CATACTACATTAATTAATCCAGTAGATGAACTACTCCGGGAATAACGACAGCAATCCCAG
TAAACTGATCACGCCAAACAACCCAGTTCTGGCACGTTCCCATCATTGGACGGGCACCTA
AGCATTGGGCTTTGCTTGGTCAGCCTATGTGAGTCGTATGGTGTTGGACCGAGGGCACGA
GTCCGCGCGGCTCGGTGCGCCGCCCCCCTCCGACGACCCAGACAGCTCGGTGCACTCGAC
CTTGCTCCTCCGCGTCGTCTTCACGCGCAGTTGTACCCCCCACAACACGACGCGCCTGCA
CACCCTTTCCACCACGTGCCTCCCGCGCCGGTGCCACCCGCCGCTCTCCAGGGCGCCGCG
CAGCTCCGACGCCACCTCCGCCATCGCTGGCCGGCGCTCCACGGTCTCCGACACGCATCG
CGCGGCGACCGACAGGACCCTGGCGATCGCCGCCTCGGCGTCAGTGCCGGGACTGGGCGC
GGCCACCCTCCCGTCGAACACCTGGCGCGCCAGGCCGGCGCCGATCAGCGGCAGCGCCCA
CGCGACGATGGACGACGGGGAGGCGTTCACGTCCATCACCTTGCGCCCGCTGATGAGCTC
CAGGAGCACCACGCCGAAGCTGAACACGTCGCTCTCGGGCCCCAGCCGGCCGGGCTCCGT
GTAGCTCGGGTCCAGGTACCCCATCGTGCCAGCCGGTGCCGGCCTCGGCGCGCCCGCGGC
AGCGACCCTGACCGCGAGGCTGAAGTCGGCGAGGCGGGCGCGGCCGTCGCGGCCGAGCAG
GACGTTGGCCGTCTTGACGTCCCGGTGGATGACGCGGGGCGCGGCGCCGTGAAGCGCGCG
CATGGCCCGCGCGACGTCGAGCGCGATCTCCACGCGGCGCGGCCACGGCGGCGGCCTCGG
GGACCGGTGCAGCAGGTCGTGCAGCGAGCCGTTGGGCATGAACTCCATGACGAGAAGCGG
CGGCTGCCCCGGCGCTGCGCCGACGAGGTTGACGACGCCCGGGTGGTGGCGCGCGGCCGC
GAGCACGGCGATCTCGTTGGCGAGCTTGGCCTCCCCCTGAGGGTGCGAGGCCTTCTTGAC
AGCGACGGTGACGAGCCTCCTGCCGTGGCCTGTGCCGCCCCTGAGCCTGGCCCTGTAGAC
GCAGCCGTGGCTGCCCTTGCCGACGACGTTCTTGGCCGCGAAGCCGCCGGTCGCCGCCTC
GATCTCCTGGTAGGAAAACTCCCTCATGCTCTTGGCGTGTTGCTACCTGCCTACGGCCGG
GTTCCTTCTTGGTGGTGCAATGGCAGTGCCGTGTGTGAGCCGAGTGTAAGCAACAAAATG
CTCGCTGCTCGCAAAGCAGTAGGAGAGGAGTGGTAGCAGCAGCAACTAGGCAGGGAATAA
AGAGAAAAAGAAGAGGCCAAGAAAGGTAAAGGCAATGGATCAAAGGTGGTAAAGGTTGGT
GATTACGTTTTTTTTAGATGGAGGGATTTTAGAGAGGGATGAGATGATGATGCTTTTGCT
TGGTCCCCTAAAGGATGAAATTTGTCTTGGAAAACAAAACAACAGACCAAGAAAGCCAAA
ATGGATTACTTGTTGTCTCGGCCTCTTCTTCTTCCTCTTGTATCTACTGCTGCTACAGAA
TTATATAAGTAAATAAATAAAAGATAGAAAAAGGCGGTGACACGGCGGGTCGTGGTTCGG
GCAGGTCGTTGAGGAGTGGTTGCGATGGGTACAAGATCCTCGCAGCAACACAACAAAATC
AGCAGCAGACGATGTCTATTGTCAGCGCCGAATGTGGGCGGTGCAGTTTTGATGGCACGG
ATATATATACGCCCCCACCTGATCACACTGTGATGGGGGAGAACTGACTGACTGACTAGC
TTTAGGTCTGTTTGGTTGGTTGTTGTGATATTCTTCGTAGCCAGCGAAACCGGACGGGCT
AAGGCGTTTCAAAAGTTTCGGGATTTTTTTTAGTCTAACTTAAAAGTCCCTACTCCCTAC
CCGTTTGTTTCCAGGGACTAAACAGGAACTAGAGGTCATCAAATGACATGTAAAAAGACC
ATGTTACCCCTGATCATATTATTAAATAACACTTGTTCATAAGCAAATATTACAAAAGCA