Contig Data
morexGenes
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Map Locations of contig_42682 (5386 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42682

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58449 1 1816 bp MLOC_58449.1 Available Available LOC_Os01g72810.1, FRAME:-3, EVALUE:0.0, 13101.m07936 protein secreted glycoprotein, putative, expressed





CDS Structure of MLOC_58449






Contig Sequence (5386 bp)

>contig_42682 5386 assembly3_WGSMorex_rbca.fasta
CGGCAACGGGATGCTGATGCAATGCTTATGATGTGCATGATGCGATGATGATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGGCATCG
GGCTGTCACAACGGTGTTGTCTAAGGGTGCTGCCAGACCTTCCTGGAGGGCGTCGGGGCT
ACCATTTCCTTCTCCCCGCCGAGTACCGGGGGAAACCCTTGGCGACAGCGTCGTCATCGT
CACGTCCCTTCTTGGAGGTATTGATTGGTACTGGCGATTCGGAGCCTGGCAGCTTGGTGG
GAGATCTTTAGTGGGCGCAACGGTCGCGAGGCTTCTCCGCTTTTTTTGTTGACCCGCCAC
TGTCGGCATTTGTTCCTTTTTGTATTTTCTTTTTAGTTTTTTTTTGGCGTGACTATGTTG
TTTACGCCCCAACATATATCGTCATTTGTATCGGTGTCGGTTGCTTTGAAATACAAAGTG
GGGGGAAACCCTTTTTCGTCAAAAGCCAGTGCAGCCACCAAAAGAGCAAATGGAGGACCA
GCTCCATGGTGGACTTAAAAAGAACATATTTCTATCACCAAAACAATTTTGTAGGTACAC
TAATACATACATTACATGTTCAGTAATAATTTCATACATGGTGTATATAAAAGAAAATAC
AGACATGAAAATGGTCATTTTTTGTTGTTGTTGGGCCGAGATATTTTTTGTATACAATCT
GCAACTCATAATTCTTTTGATCGAAATTTTACGGACATGTTGGGAATATCTATAAGTTTT
CAGAAAAATATTATTTTTTTAAACATAGAAAAAACATTTCTGAATCATTTAAAATAAAGT
TCTCGAGTGTACCTGTCTACCAAAACTTGCACTCAGTGAGCCATACACATTTTAACAAAG
ATGTTGTGATTTCTTTCCTTCTAGATGTTCCATAAAGCCGGTGTTGGCGACACGGAGTAG
GGTTGGCAGCGCTCACAACAACATCAATAGTGCTATCTCAACAGACTTCTACATGCGTTT
TACAGGGTTAGTTTGAGTTGGCAGATTGTTATTGAATTAAGGGGAGGGAGAGGGAGGGGA
ACTTTTGAAATCTGGGTGTATATACATTCTATATGTAAAACAAAATTAGCAATTCAACAT
AAAATCAAGAAAATCTCAAACTATTTTTAAATAAACTTGATCTTTAATTATACTTGTAAG
AAAATTTTCAAAAAAGAAAATTACACTTTCATTTCTTTTCATAAAAAGACAATTTTTGGG
TCAAAACAGTATGACTAGTGACCTATAATAACAAATAAATTTCATTTTTTTTGTTCAAAA
GTCAATATAGACTTTTTTCTTGAAAATTATATAGTAGTACAAAACAAAGTCAAGTTTAAT
CTAAAAATATATCAAAACTATTTTGTCTTTTTAATTAACTAATTAAAAAATCATTATATA
GGCTGTATATACAATCAGGAACCAAAGTGTATTTCCCGGAGGGAGGGACACCCATTTGAA
ATTCAGGAGGAGGGGGGGCGGGGCGTAATAGTGGGTATGTTGTTTAGATTACTAGATGAT
GCCTCGTCACGTTGCTGCGGAAAACTTGCTAGAAGATCTATGAAAATTGCTAAAAAACAT
CTATAACTTATAAGAAGCGAATATAAGCTCAGAAATGAAAATAAAATATAAAAAGTGTAA
AAAGAGAAAAAAAATGCAGTAAAAGAATGTCATTTTTAACAAAAATGTGAATTTGAACTA
CATATGTATGGTACATGCAACCAACACATATATTGTTAATATAAAATCTAATGCGAAAAG
TAACTTAAGAGTAATATGCATGAATTGATGTTATGATGCTTGCATGTATAGAGTAATGAA
AAAACAATGTAATTTATAACTTAAATACATAAATTTCTCATGTGTAGCACACTTGCATGT
CTAGGAAAATAGTACTAGTGGGTTGTATCTATTTAGAAATAAAAGATTGAAGTGGGATGG
TGCTGTGTGGCGAGCTTTGCTACATCAAAAGAAATTTACAGCGCCCACCCCACCTGTTAA
ATTCTGGGGCGGTTAATTAGGAAGGGAAGGTTTAGGGCTTTGCTACAGCTACGGATGCTT
TACAAGACTTCTATGGACGAGGCTGAGCTGGGTTATTTTAATTGGTGATTAGATGAGGCC
GGTCCCACGGTGAAAATCAAAGGGGAAGATTAATGAAGGGAAAAGTATAGGTCCGTAACT
TTTTGTAAAACAAATCCGTAAGTCTAGCATTTTTGAAAGGTTTATACTGACTATTAATCC
CACCGCCCCCCTGATGTGCATTGGGTGGGCCCCTCCTCTATTTTCCTCCAATTAGAAAGA
GCCATGTAAGCCATTACGTTACTTTACGGTATGGTAGCTATGTAGGTTTAGCATTGCTCA
CTAAAAAAGGACAAATCAACTGTTTCATAAAATTGTCTTAAATAAAAAACTGATCTGTAA
AATCATGTAGCCTTTTTAACACATTATGAACGCAAACGTTTGTATATACATGCGTATATA
TTCATCTTTTTAAATGCACACACGTACACCTTATTTCAATACACCTTATAATTTTTTGAA
ATAAGTTGAGGTATATTGCGAGCATCGGAACTTAAACCCTGGTAAAATAAAGATACCAGT
GTTCCTCTAACTACCCAACCAGGTACGTAAAATCTAGCATTTTGGACAGTATCCGACTAG
GAGCTCAATGTGGTAAATTTTCGTGTTTTGATCCTTTTCTGGAACTTGATTCAAATCTGA
CCTTAATTTATACAAATTTTGGGATCTGATTTTTTTTTCCTATCATCAGGTTCTATAACG
GTAGGGTATAACAACCTATCACCGTAGTCTCTAATGGTAGAATTGCAGGTCCTATCAATT
TTTTTCCTTAGTATGCGGCACGGTGTTCACACCTACCGACGATCACCTTGACGGTAGGGT
ACAGGCTACCGCCATCATGTGTGGTTGTACGGGTCCGTGGTGTTGACGTGGATAAGTTTC
CTACCGTCAGAGAGGTCAACGGTAGCCTGTTATACCCTGCCGTTAAAGACTCGACGAATT
TTTTATAAGAGGGTCAGACCCCGATTTATTTACAAACAACGGTCAGATCCGGATCAAAAT
TTTAAAAAGGGTCAAAACATGAAATTTTGCCTCTCAGTTAGGGAGAATGGAGAAAAGATT
ATTTCATTCTCATGGTCAACTTTGGAATTTCAACATATATGCCATAGAACTTAATTCGTG
GTGCTCAGGGTGGGAGTAATCAGATCCTGGCTGACTCGGCCTGCACCTTGATGTGCATGG
TGGAGTTGTAGTGCACCACCTCGGGCCGCACCGTCTGCATCGAGAACACCTCCGACTGCA
GGTAGCAGAACCCGTCGCCGGCGTTGGGGCCGTAGTAGAACTGCGCCGCCGCGCACGCGC
AGTCGTCCAGGCACGCCTTCTTGCACGCCTCCTCGCCCACCCGCTCCACGGCCCGCATGC
TCGTGGCGTGGTCGTTGAAGTAGCCCGTGCCCGGCAGCGACACCAGCCGGTGCTGCGCGC
GCCGCCCCGGCGACGACGAGGAGCCGCACGCCGTCGGCGGTGGACTCGTCGGGACGCAGC
CGCGGTTGGGCCTCCGGAAGTCCACCGCCCGGAAGTTGGCCGCGTCGGGGCAGCTGCACT
GCGTGTCGTCCGTGCACACGCCGTACGCGCCGCAGACTGTTGGGTACGCGCAGCCGCCGT
CCGGGAAGAGGCGCAGCACGTCGAACACCGGCGCCCAGCCCGAGCCGGAGCGCCACTCGT
AGAGCCGGAGGTGGCCGTCGTGCTCCAGCCGCATGTACTGCACGGTGCCCGCCACGACGG
TGGGCAGCTGGATGACGGCCACTGACGGCGCTCCGGGCCGGGCGGAGACCGTGAGGCTCC
CGTTGGCGTACGTCGCGTAGGCGCCGACCGCGGTCTCGCCGAAGCCGAGGTGGAAATAGC
GCTGCGGCGGCGTGGCGTAGACGTAGGCGCTCAGGGCGTCGTCCTCGACGGTGAGGTAGA
ACCTGCCGTCGCGCCAGTCAGCCGCCGACGCGTTGGCGGTGAGCCGCGCGCCGTGCTTCA
GCGACTGGCCGACGAGCAGCGCGTCCGTGGGCTGGTCGAACGACTGCCACACCGTGGCGT
TGAGCCCGTCGAACAGCACCAGGTTGCCGTCGCTGCCGATGGTCACCCCGGCGACGGACC
GGCCCTTGGCGCCGGCGGACCACACCGCCGACCCGTTGGCCGATCTGAGCACCAGCTCAC
CCTCAGGCGTGAGCTCCGCGGAGGCGCCCTCGCCCACGGGGCTGGCGCGGTTGGCGGACC
AGACGACCTGCGGGACGCCGGTCGTGACGGAGGTGATGAGCGCGCCGCTGTTGCAGTAGA
CGACGGCGACGCCGAGGAGGAAGCCGGCGCACGGGGCCGCGCCGTGGCTGCTGGTGCAGA
AGAAGCCGAAGGCGAAGGAGGGGCCGAAGCCGGCCGGGTTGAGGCGCAGCAGGGCGACGC
GCGCCACGGAGCCGTCGGTGTAGACGACGTGGTGCGGCAGGCCGGCGTCCGTGTTGGCCC
AGGTCGTGGGCGCCCTCGCCGCCGGGTAGTCAAACCTCTGCTGCTCCTGCTGCTGCGCTC
GAACCCCGCCGCCGGCGAGAAGGCAGCCGATCAGCGCGATGATCGTGGCACGGTGCATCA
TGGGCCGTGACTGCTTGATCGTGATCGTGATGTGATAGTGGATGGAGCACTGTGGTGGAG
GAACGATCGACGGAGCGTGTTCTTTTATAGTATAAGCGATCGGGATCGGTGTGGACAGGA
AGCATGTGGAATTCCGGCGTGGAAGTCGTCGTCGTCGACCGGGATGGCGCCGCGCCGCCG
CGTGCCGTTGGTTCACGACCCGTCAGCGCGCGCGTATGTACGTACGCACACGCAACGTGG
CGGCGAGGTGTGCCGGTGGCCAGCTTATTGCCCGCCGTACGCATGTGTGCATGTACAGCG
CGTACGTACATGGTTTTCTTGTACCGTTCCTCGAGCTCATTTCCTTGCATGTTATACTTC
GATCGCCCTGTCGGTGGCACGCGCATACATACCTTAGTACGATACTGTCCGGTCATGAGT
GCTTGCTTAATTCATTGTAAGAGAGTTTGTGATTGGGGTGATCAGGATCCACCAACCCCG
CGTCGTCTGCATCGTTGGATCCGCATGTAACATTTTTCCTCCTATGCAGCAAAATTTCGA
TATCATGCAACAATTTTTTCAACGGTTACAATAAAAAATAAAATTTGTAAAAAATAAAAT
TTGTAGAAAAAAAATATCTACGTGATCGTAACAAAAAATGAAGCTGATGGTACGTGGTAG
CAAAAGTCAAACGTCGATTGTAACAAAAATTTACGTGACGTGTATG