morexGenes - Barley RNA-seq Database

Contig contig_42658
Source Contig contig_42658
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42658 (9891 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42658

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58429	1	1269 bp	MLOC_58429.1	Available	Available	None
MLOC_58430	11	3033 bp	MLOC_58430.3	Available	Available	LOC_Os01g09020.1, FRAME:-3, EVALUE:0.0, 13101.m00956 protein WD domain, G-beta repeat domain containing protein, expressed
CDS Structure of MLOC_58429

CDS Structure of MLOC_58430

Contig Sequence (9891 bp)

>contig_42658 9891 assembly3_WGSMorex_rbca.fasta
GACAAGTCAATTGTCACAGCTCATACATCCCAATAAGACTTGATTGTCAGATTTAGAACA
TTGATTAATGGCGATTTTTACCAGAATAACTACGTTTACTTGACCAATATCAAGAAGACT
TGAACTATAATTGTTGGAACTCATGTGGAAGGGAAACCTTCAAAATCAGAACTAGTAAAG
TGCATCAGTATTTATTGTATAATGAAGTCGGTTCATATTCCACTTTCTGCATGGAAACTT
AAGAGTTTGGGTATTGTTTTTAATTTCAGATGGCTAAAAGAGGTGATTATGGTGGGCAAT
GTTGTCAATGTGTAAATCGTCAGGCTCATGTGTTTTTAGCATATGCCATACCGCAACCAA
GTCCTAGCACTAATCGACATGCTTTGTTGTTATCGGTAATGAAACCAGTCAAAAACAGTC
AGTCGTTAATCCCAGTTGTTCTCTGGTAAAATAACTGCAACTGGTGTATAACGTTCCACC
TAACAAAATGCAAATGTCGAAATCAAAATCTGAACACAGTTGAGCATCAGTGCATCACGT
TGTTGATTTCTGGAGTGTAATGACAGCACATTATGATCTCCATTTGGGAAACAGCAAAAA
GACCAGCATAGTCAAGCTTGGATCACTTTGTTTAGCTAATCACCTAACCTAAGCAAGTAG
CATAACAGCACTTGGCATTTCATGTGTAGACTACAATGGCTGGTATGGTAAAGACAAACA
TGTAGATGTACCACCCCATCAGGCTAGTTTACCTGCTAATACTAGTTCAATTGAATACAA
CGGTGCGTCGTGGCACATATCATAGAGCAGTCTGGACGTGTAATCAACTGAGTTGTTAGC
AAATTAGTTAAGATATGATGCTGATAGTGGCTTACTTGCTAGTATTCATTGCACAGCAGC
CATATATGAAAGCAGACAATTGTTTTGACCTAGTTGTGGATCAATCAAAATGAAGTAAAC
CTAAACAGAGGACTGCGTGACCCTCACTATTCTTCCGTCAAAGGGTTCAGACAAACAATG
CTGCACAATGACTCATAATGAAGCTGAAATTTTAACCTCTGTTGACTTTTCTGGATCGGT
GCCAGGATTTTCTCGAGGAAAGATTCAGAACAGTGCAATCAACTAATAAAATTTTGTGAA
GATAACATGTAGTGTATGTTAATATGTTAGGTAAAGCATAGACATGACAGCAGACAAATG
TTAATAGGATGTGCATGTGCTCATAATTCTGACTTCCGAATTACTGACCTGAGTTTCTAT
GCACTAAATTATATCAAAGTTTGCTGAATTCATCCAGGCGTGCCAATTTGCATAGACTAT
TCTGTTATGGCACTGACATCACTCCAATATTTTGGTCTTCGTGCCATGATACATCGGTGG
TTAACTTGATAGGCCTGGTTTAATGCACATGTAATCACCATTAGCGAGAAATGCGGAAAT
GAGCTAAGAGATAAGGTTCTATTAGGTGGCTTCCGGGAAATGGCCCGGTTCAACTTGTCT
CTGCAGCACACAAGGATGAGTCCTTTTCACACTTACTTGACACTGACTTTCTAAAGGGCA
GTGACAAAAAGGCATATTCGCAGTGCTCAACTAAAATATTAGAAGTAACTTTCTGTCCCC
ATGTTGAGCTTCAGGCTGAGCTCAGCCTCCATTCTCAAAAAAGAGTGTCCTCCAAACAGA
TACTGCCATTATATGCACTATTAGCATGAAGCACGGTGCAGATACTAAAGCAAAACCATT
CTCTAGTGAAATAGTGGTAGCAGGCTGAAACTCTCACAAGTATTCCTTTTATTTTTACAA
GAAAGCGTGTGGAAAAACTAATTATAGGAAAATGCAAAACGGATTTGAGACATGTGATAT
TTTTTCCTGGTAAACGAAGAGGTAGAACAGAGTTCTGCTCTAGCAAGTTAATATGCAAGG
CCAAAAAATACAGATCACTAAACCATGGAAAAGATGGTTTGTTCTCAAGTCTACTTGGAA
AGCATGAGAAAAATGACAGCTTGCCTGCATCTAAGATGATACTCTTCTTAACAGCCTAAC
AAGTCTCATAGGAAGTAAACCCAAGACATTCTTATGCCAATCAACTTCAAGAGTGCACGT
TGGTACCAGCACAACTGGTTCCACTGCATAACTAATTAGATTTGTCGCATATAAATGCCA
AAGATAAGAAGATTACTGGTTCAAATGTCAACTGCTTACTGTAGGCGCGAGAAAAAGCAA
AGACAATTCGGTCACACCAACGATTCTTCCATGGAGAATATAGATGATTATAATCATAAT
AGAGACTCACCTCTGTCCTTAGCAATAGAGCCGTCGGATTTGTAGCGTGTAAACACCTTG
CATTGGCAAGTTGGACTGTGACATTGCTGACTTCAACGTACTGCAGGTTAAACTGAGTTC
TCCCTTATCTTTAGTGACCATGTTTGACATTGTAACTCAATATAATACAGCAGTAACTGT
GCTGGAATTCAGATAGTATTCACACTGAAGCACGGCTAACCTAGGTTATCTTCATGTATA
AGAACAAGCAATCCAGCCCAAAATCAGTTCCAATTTTGATGAATTTGGATACAAAAAAAC
TGTGGTGGTGCAATATGTACATAAAACCTGTGGTGATACAAAAAACTAAAATATGTACAT
ATTAAACTATTCGATTTACAAGTTTGATGTGATTAACAGATAGTTTACACTGCTGCTTTT
CCATCAGCAATAGTTGGCCATAACAGGGAAATAATAGTGCACTCAAACTTCCACATCATG
CACCACAGTTCTTCAGCTTGATAGGCTTCTCCAAAACCATTTTCTGATCTGTGGAACTAC
TAAACATTCAACTTGTTTTTCTCTTAATCATTGATCACAACACCTGAGGCCATCAAGCCT
CTCCAGAGATCATTTATGTTCCATATGCAAGAAGAGAATGGATAAGGAATGAACTGCTCC
ACATTAATACATTCCTTGAGGACAGGGATAGACTGAATCCCTGATAAACTGCAGCATGTC
TTGCATCTGAAATTACATGCTGCATAAGTGCATAATAGGTAACAACTTATACTTGTGGGG
TATGATTCATGAGCTATGGAAAATATTACAATGGTAATACGATTGTCAGCAAAAATTCAA
AAATAAGAAGGAAAACAACGCTTCAGAGGAATAGTGAGGGGACTAGATCTCGTTTTTTTT
AGAAACCCTATCCACTGTAATTCTATGGTGAAGAGAACAACATGATTATCCTGTCACCAC
TAGTTACACAAAGGTTCATGCTGATGTATGTAGCTACAGATGATGCCTTACAAACAAATT
GCTAGTATCCTTCCTGCATGCATAGTGCAGGCCCATTTGCAAAGACGCTCCCCTATTTTT
AATAAACCTTAGCATGGAAAGGCTAAGAGAAAGATATGCACCAGCTTAGCATAAGGAATG
GGCTCTCAAAATCTCATCCTGTATGTAATGCTACCTTTTTGCTAATAATTTACGCTAGTC
TTCGTCGTCATATTCTTGAGGCCCCCAGAACTTGGAAACCTCCTTGCCAGGTAAAGCTAC
AGGAACTGAGGATCTCAGAAAGTCTTTGTGGTGTAACAGGCTGCCTCTGGTAGGACTAAT
CCCTGAGGTGATAATCCTACACCCGTCCACGGCCATGGCTGACACTGTGCTTCTCCCTCC
TGATTTAACAGGCTTGTCAAAACTCAATCTGTTCACCATGTGGCCCGTCCGTGTTTCCCA
GACATGGACCTGACCATCCCATGGCGCGCCCATCACTACCTTGTATGGATCCAAGTGAAG
CAACGTCACAGGACCATCTGAATGCAATTCTGCGACTGTGTGCTTGAGTTCTTGAGACTT
ACGAATATCCCACAGAAGAGCCCTGACCAGCAAATAATGATACATAGGTAAGGTTTGCAA
CACAATCGAAGCTAGAAGCATGAAGAAAAGCACTGATTGTACAGATATTTGTGAGCTTAC
TTGTCTTTTATGCCTGTGCATATTAACCATTCAGAAGGCAGCATCTCACAAGAAAGTATT
CTTTGGTTACGAAGTTCAAGAACAGAAGCCTTCTTCATCGTCCTCAAATCAATTGCTGTC
ACTTCAGATCCAGCAGCAATGTAACAAAGGGATTGATAGCACTTGATTGCAATTGGTGGA
CCACTTGAGTTAAGGTGAGTACCCCCAACACAAGACGATGAGACACTGGAAGTAGGTGCC
ATTGTGTCCCACACTTTCACCTGTTATGCAGCATAACAACATGAAAATACAATAGAGCTT
ACCATGAGCATCAAATGGCTCAGATAAACAAGGCTAAGTTGTGGACCGTACAGAATATGT
TAAACAATATTACTTCTATTAATGTAATATCTCAGATAAAGTTGTCTTCGATGTTCTATT
ACCTTTGTATCTTTGGAACTGCTGACCAGCAGGGAAGATTTATGCCTGAAGAGCAAAGAA
GAAGCTCAATAACCGTGCTGATGAATCATGATTTAAGAAACCTTGGAAAGTATAGGAACC
TTGTAGCTGTATAAAAGCCACTGAAATGCTTCCAGTCTGACAAATGGTGCACTTGCAAAA
ATATATAGTCGACTAATAGTTGAATAAGTTTCATTCAAATAGTTTGACGGTACATACCAA
GCAACAGACAAAAGTGACAGTGTCTTTTCATGCCCATACAAAGTTGATATTAGAGGGTGT
TTTTTTGCTCTTGTATTCATAGACCAAAGGCGAATGGTGCAGTCTTCACCACCAGTTGCA
AGTATTTTAAATTCACCATCGTCAAGCAATTTGTCAGCCACAGCAGTGACAGGTCCTGAA
TGGCCCTTGTAACAGCGTGATTGACCCTACATAAAAAAGTTAAAAACATTCTTAAGTCTT
AACACTAGCTTTGCATCAAACGCCGAAAAATGAAGAAGTCTAATTTAATTCACGCAATGA
ACACATTCAGACCATACAAATTAGTGGAGACTGTTAAGACATGAACACTGCACAAATAAG
AAAAAATAGAAGAACTTGTCATCAGCTGATCATGCATGCGCGTATCCATATGTTACACCA
AAAGAAGACAAATAACTGAAGATCACAATGAAAGAACTAATATCAGGTATTAAGAGGAAC
TCCCTCCGTTCCATAATTCTTGACATGGTGTTGGTAAGGAAGGACACACATTAGGATGTA
CAGTACAGCAGCATGTTGGAGGCTTCTGTGTAATTTCATACATGCAATCAGCCAGGCTGG
CACAAGGAGTGGAGGCTACTGCATAATGATTCCTTATGAGTTTAAGCAGATAAGATCTAC
AGTACTTTGTCTCTTGTTAGTTTATAACAGCAGTTTAGGTCCTGCTTTATCTCTAGCAGC
CAGTACTACATAAGCCGCACCCCAACCAGAATTTCCTTCTCCATCCTCACCCTAACTAGA
TTTCCTGGTTACCACGCTTGAGTGCCGCCTTCTCATCGGCACTAGTTTTCCAGAAGACAC
AAAAGACTTGTGCATTTCATTTCATTGGAGAGGAAGAGTTCGGTACAATCCTCCTAGGAG
GTATGTTACAGGGCAGTGACAGAAAAATTAGTGAACATCCCAAGTCTGCGGTAAGATGGC
GCGGAGACCCAGAGCCCTGGCCCATAGAGCAGTCTCATCCTGGATCCTAGCGACCAGGGT
ATTGATCGAGAGCCACCAATCATGAAGTGTGGCGTCATTGTCGGGCGGCAAGTAAGAGAG
GCGCAGCCACGAAAGGATCGCGTACCACATCGGCCGGGAGAATGGGCATCCCAGGAGCAG
GTGTTGTATCGTCTCCGGAGCCTGATCGCAGAGGGGGCAGCGTTGCGGGTGCGGCAGGCT
GCGGCGAGCGGGGCGGTCGGCTGTCCAGCAGCGGACAAGGTTGGCGAGCCAATGGAAGAA
ACAAACGCGCGGGGGAGCCCAGCACATCCAGGTGAGCCTCCAGGTCTGACATTGGATTGA
TCGTCGGCAACTAGTTGGTCTAAGAACTCCTCGTGGCCACGGGTTTGCAGAACGGTCCAG
GGAATCTAACATGTAGGCACATGGAGGGCTGACAAGGCAGAGTGAGGGGTACCGCCACAT
AACTTTGTTAGTAGTTAGTGAGATTGGCATAAAATAAAGCAGCAGGCCAGGGTATACAGT
GGCCGCTTCACAATTTCATCAGTAGACACCACAAGCACACAAGGAAATAAAAGCAATCAC
AAACAGAAAAGGAAATTACTATTATTATTATTATTATATTTGACATGAGGCAAAGAGGAA
ACAATGTCTATCTAACACTAAAATTTCTTTTCAGGAGCTTGCATCATTTTAGTAACTATT
TTTTATAGCCATTCCATTACCATAATAATAGTAGCAGTTAGTTTCTGTTTTTTTATTGTC
ACTGTTTCAAGTACCTCTGCACTCATGTAAAAAGTCAGTGATGTCATCATGGAATGGTCA
TATTGTATCCTCGCAAAAAATAACCTACATGTTGTAACAACATGGTAATGTAACGTAGAA
ATGAGGTACCTTCCAGCAAAGACGGACTGTTCTATCTGTGCTTGAAGTGACTAATGCCTT
TTCATTTCTATGTGCATCACTTCGATACAGCGGGGTGTCGATTAGTGGGAATAATCTGCA
AAATGAGCATAATAAGACATTCATGTCTCTGCGACTTTCAGCAGGCACAGTAAATTTTTA
TACAATGTGAAATAAAGAATTGGGGGGAAGCCAATCACAGACAGAACTGTGAAACAATAA
AAAGTTTAAATTGTGAAATAAGGATACAGTATCCCAAACAAAAACCAACTAGTAACCATG
AAAATGATTTACAAGTTACAACAATTCCTCTCTGCTAGGAAAGAAGAAAATTAAGTAAAA
GGAACGATACTATAACTATGATCCTGGATGATAATGAAGTAAAAATGATATTATCACCAA
GAAGTGACACAAACGAACCTACAAAATCCAACGATATAACCAAGGTACTAACTCAAGTGA
AGTTGCCTATTTGTCTAATAAATGGAAACAAAGATATAAAGCAAGATTAACACTATGTTA
AAAGTCAGATGAGGTCATTTTGTTCCAAATAACATGTCAGTCATAACATCCTACTAAATT
CAGAAAATTTCTTTATGTGAGGATTAAAGAATCTTGCCCAAGACATTAAGTGGGGATGGA
TCTTAAATCCTAACAACCATTAGCCCAGATATGCACTATCTTTGGTTCATTATTCTAGGA
ATAAAATAAGGATTCAATGGTCACCCCTTGATTCCCCACATGGTTTGGATGATTATGAGT
ACATGAAACTGATGGGGAAAAAACTTGAACATCAGATAGGCTAACTAACAGGTAAAAAGA
TCTACAAATGTCTAAAGAAAGCAATGGTTATTTGCTTTAGCTTTACGGTTACCTCATACA
AGTGATCTTCGCACTATGAGACCTGTAGCATTCCACCAATTCCATGTCCAGTATACTAAT
CCTCAATCTTTTGGCTACTGGTCCCTGCACAGAGGAAATCGCATAGCATATGTTGCTTAG
CACAAATAAGCTTTTGAAACTGCAACAATCTGTGTTACTTAAGCAGAAGAGCAAATCTGC
TAAATTAGAAACACATAATACTGTTGCATTTCACTCACTTGAGAGAACCAAACACCATTC
CTATCAAGCATTAGATGGCTTGGTGTTGGCTTCGTGGGATCTAGATAATAAATAGATGAT
AAGGGATCATCAAACTTCATTTGATGTACTTCAGTGTGCCTCCGAATATATAGTTCTCTA
ATCCCCAAAGCTCCATAAGGCATTTGTTGAAACGGCCATTGCTTCCTAAGCATTCAAATA
GTCATGATGCAAATAAACAAGTCCACAGTCAGATACATGTGTAGTTTTCAAAGTCTCAAA
ATACTACTCCCTAAGCATTCCGAGGAAGTATATAGTATGACTCTCAAACATTAGACGGAT
TATGTGAGTTCAGAAAAAGATTAGACAGCATTGATCAACTCGTACTGTAAAACTTGCTGC
AAAGCATTAAACGTTAGCTGCCTGAAACTTTCAAGTTGCGTGCACCTTATCAAACAAAGT
TCATATTGTGTAGACAGTGACAATTCCTCCACCAACAGAATAACTATTAAACTACCAAAA
AGTACTTTTCCTTCAAAAAGTTAGTCCAACAGAGTCAGAATATAAGTCATTTTGAATTGC
ACTAGTCCAATATTTGTAGGATTGACTATCTATAATGAAAGAATAACTAGCAGCAACAAC
ATCAAATTGATATCTTCAACATGTAATAGATGTTCATAATGTATGATAGTACCTGAAACC
CTAAACGCGAGCTCACTCTTCATGTACAAACCGTTCTCATTTTAGGTGAAACAACACTTC
TAAATTCAAATTGATGATCAATGTGGCACCTTGAAAAATGTATCAATGTCCAAAAAAACA
CTATTGTTACGACACAGAGGGGGCATAGCATGAACATTAACACTGTTGCTTGCTCCATGT
TTCAAATACTCTACTTTGCTGAAGAGATACAAATCTCAAGATTGATAAGTCCGCAGCTTG
CAGTCCCAACAACCAAGACAACTAATAAAGTTGCTAGGTTTGTGCCACTAAATATGTGGA
CCCGCGAACCCTCTGACCGAGTGACCGTCTTACGATCAAGTTTGCCTATATCAAATGCCA
ACCAATCATACAACAATGAAGATGGAATTCTCCCTTTCAGTGCATCCCAAGAATTAATGT
ACTGTTCAAAAGTTCGAGGCTTCCTCAGTCTAACTGACACCCAGATGTTCACCCAAGAAG
AAAATCATAGTAGAGTTCATAATTTTCCAGTCCCAATCATCGTCCAGGTACCTAACATCG
CGGCAAATCACTTTTCCCCAAATTTTTAGCTCCGCAAAAGCTTCAAGATCCCAATCAAAA
GCTTCAAGATCATTCGTAAACTCCGGCCACAAAAAAAATCACTGAGCTCTGCATCTGCAC
CCCAGGATCCCACCTTTCAGCTCCCAATCAACACTACACGTCTACACCGTACAATGACCA
AAAGGGGGTAAACCTAATAACCTATTGCTTACTGGGTCTGTAAAAATTGCCCTATACAGC
TGAGTGTGCCGACGCATAAATCGAAATTCCCGAATCGGACGAGAGACAGAGGAAAGGGGG
TGAAGGAGGCGACCTGTAGAGGCGGTACCAGACGGCGTCGCAGTAGGCGATGGCGTGCAG
CGGGCGGCAGGCCATGGCGAGGCTGGCGACGTCGCGGGCGCCCAGGTGGCGCGCGCAGTG
GGCCAGCACGTCGCCATCGAGATCGACGAGCGTCCTCCCCGGCAACGGCGCCGACATCGC
CGGCGACCTGAACCCTAGAACGTATCACGGTGGCCACCGTCTCAGGCGCGCGGGGAAGGG
GGGAGAGGCGGCGGCGGTTGCTCTTTACCTCTACGTCTGTCCCCAAAATCTATAAACTCC
TTTTTTTAGTACGTCTGATTTTTATCTTTTTACAATGTTTTTTTATTTCGACAATCCCTT
ATTGTTTCCATTCTTCATACCAGACTTGTACCGTCCATTACCCCTGTACATGAACATTTA
CGTCTGTATTGTGTTTTAAAAAAAAATTACGTTTGGAAAGCGTTTGAAATCGATGCGGCA
GGCGGAAGCTTCGGTCGGTCGCAAGCCTCATCACGCGCATGGCACTCGTGCAGCCACGTC
ATCCTAACACCGGCCATGTAACCGCCCCGGTCTAACCTTATTCATCCTCGTTGACTCCTA
AGAGCAACTCTAGCAGATCCCGCAAAAATTCGACCCGCAAAACGCGTTTGCGGTTTCACG
AAGATCGCGTTTGCTGGTCGAAAATATGCGCGGCCGAACAAAACCCGTATCAAAACCTGC
ATAACGCGAAGGAAATTACAAAAATATAGTTCATCACATACTACATAGTTC