morexGenes - Barley RNA-seq Database

Contig contig_42638
Source Contig contig_42638
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42638 (7382 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_42638

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58403	1	1570 bp	None	Available	Available	None
MLOC_58404	1	1344 bp	MLOC_58404.1	Available	Available	LOC_Os11g37270.1, FRAME:+2, EVALUE:1e-19, 13111.m03648 protein AMBP1 - Antimicrobial peptide MBP-1 family protein precursor, expressed
CDS Structure of MLOC_58403

CDS Structure of MLOC_58404

Contig Sequence (7382 bp)

>contig_42638 7382 assembly3_WGSMorex_rbca.fasta
GCGCCGCACCGTCGACAGGTGGGTGGACGCCGCCGGAGATGGCCACATAGAGAGGGTCAA
CGCATCCCCACGAGTCACCGGAGGCTCTCCTTGCGCAGAACAAGGCCGATGCACACATCC
AGCACTGGAAGAGGGGGAGCATCATGCCAGGACGAAGACGGCCACACCGCCGGTGCCACC
AACCAACCACAAGCACCCACCAACTACAAGGCTCCAAAGGCGGCGCCTTCAAGAAGGGAA
CGACACTGGGAGTGCTGTCACCGCCCAACAAAGTTAGGGCTTTCGCCCCGAAGACCTATA
GGAAGGGGAAGTGGAGGGAGGCAGTCCGTACCAACGCCTCGAGGAAGGGGAACAACGCAC
GCAGGCATCGTCGTCGGCGCGGCCAGCCAAGCCGGCCATGGATTTTGCCAGGACCTCCCC
AACCCCACAAGCCACCCCCTGTCCACGTACCGACGACCACAAGAGGCACCACCCGGCTAG
AGGGGCCCGCACGCCAATCAGGGGAGGGGAACGCCACGGTTCTCGTGTCGCCGGCCGCCG
AGGCAGCAACCAGCCGCCCACCTCCTCCACCAACATCCCGCCACCCAAGTGACCAGCGAC
CCCGGATCCGTCGTCCGCACCGCCGGAGGCCGCAGATCCGGCGAAGCCTCACCAGAGGAG
CCGTCGCTCCGGTCCAGGACTCCCCACGGCAGGGCAGGGCAGACGAGGGCCCCGCCGGCA
CCATCCTTGATAGCGCCTTGGGCTAGCCGACAGCTGCCTCAGGCGGCGGCGAGGAGGACG
GGGGAAGGGGCGCCCGACGACGGCCTAGGGTTGTCGCCCGCCGAGTCGCCCAAGCGGGGC
GACGCGAGGGTCGCTCTGATGCCATGATATTCATAATTAGTGTTTCCTCATATGAGTATA
GAATAATGTTTGACCCTCTCTTTTCGACTCGAGTTTTTGGTTGAACTAGTGGTCTTAAAT
TTGGATGGCTAAGTCAGCGCTAACTGGCTCATTAAGGTTTGGCATGTTAAGTTCGTACAT
TAAGGCTCGGCTCATTAAGACTTTAAGCCTAACTTTCAAAAACTATGTTTGGTTCTGCTT
TTGTCGAAAGCTCGTTAAACTCATGAACGCTTGTTAATAGGCTACGATTATTTACTGCAT
ATCGGATAAGAGTGTGGGTGTAATTTTTGCGAACGAAGATGGTGAGTACAAGAGGAGACG
TGTTAGATTGCTGCCACCTACGAGCTAGGTTGGGTCGATTAGATTAAATAGATGAGTTAA
GGTGACATGAAAATGTTGTCACGTAAGACAATATTATGTGTTGTGCTTTACTAGAGCACC
TTGTCAAACTCGTTATATCATTCGTTAAACTCATCAAGTTTAACAAGCTAATGTATGTGT
TTGGCTTTGTCTTTAAAAAGCGAGTGGCAAGCTTAAAGAGGTGATCTATTGAGTGCTCAT
TAAGTTGAGATCTACAATAGTTTTGTCCACTCCTATCCAAGGGCATCCAAAACATATGAA
AATCCATATCCATAAGGAAACAAGTGCTATATATGAGCTCTTAAGACGGTTGGGATTTTC
TATTCTACAGTCATTACTTAGAATGGTAGATACATTTTATTCTTGCGTGGTCGTGGTGGT
GGATGTTAGTCTACATGCGCAGCATAGAACGGTTGCAAATGATTTTTTTGCTACCAAGCA
GAACAAGAACATGCTTAGGGTATAGATCACATGTTTACAACTCGACGCGATGCACTTGCT
GCAGAAGTAGAGTTGAAGTAGCGCATTGTCCAACCGACTCATCTCCTCCAGCCGATTCCC
CTGAGCAGCCGATTGCCGGTACCATCGACCTGGTCATTGAAGCGATACAAGTGCACCTTG
TGTACATGTATTCATGCGTGCTGGTCAGAACATCAAGTGGCGGGTTGCTAGACCAGATCG
CACGACTAGGACGTGTGAAGCTGGATAGATCTGTTGAGTGGTGGATTGCTAGACTCGATT
ATTTGACTAGGACGTGTGGATGTGGCTAGATCTTCTAATCGTCAATCATCCAACTCGGAT
AAAATGCTTCAGCCTATGTACTTGTCTCATTGTGGGCTCAACACTTCTGGGCCACTTGAA
CCATAAAGTTCGTATTCCACTTAGCCCATGATCAGAGTTGCCATCCGATCACATCCAAGT
AGCGAAGTTTGAATCGACCAATTGGGTTCTTTCGCTTATGTGTGTGGCCCTTTAGGTTCA
TGCATACATGGTCTTGAGTCGGATCACATCCGACTTGGTCAATCGGTAGCGGCTCTAGGA
AGAACATGATAACTTCAAAGGGTACGATAAACCAACCTAGCACACATGTATAATGTGTCA
TATTCTGATTCTTTTCGCCTCATGATATATATTCTTGGGATCAGGTAAATCGGCCCTACT
TGTGTCGGACCGACCTCTTTTCTCGACCTATGAGGTCGATGCTCATTCCCAAAATCGAAT
TAACGAGTAACCCAAGTTGTACGCATATGCTTTGTTCAAGTCAGATCACACGACACAGAA
TATCTTTCCAAGTATGAGGGACAAATTCCTCCTTGGTCAACCATGTCTCGCCACAAGAAT
CTGGAATTGCGTGTAATCTACCTTTATAACAAGCCAATTATGGAGTAGCATTTGATTGAT
TAAAGACCAGTCAGGCCACACCGACTCCAAATGTCAATGTTCTCATATGTTTTCTTGTTC
ATTTTCTCTTCATTCTATTATTTCTTATTTTAAATCCAAAAACAAATTTTTTAAATTTTG
TGAGCATTCATAATAATTAATTTGCATTTTCAATTCATGATTATTTTAATTTCATGTTCA
AATTTATAAAAATAAACATTTTAAACTTATGAACACTTTTTAAAAATTAATGAACATTTT
TTACTAAAATAATTAATTTTAAATTTGGGAAAAACAAGTTAAACATATTTCAAATAGTAG
TTTTTAAACTACGCTAACAATTTGTTTACACTGTGTAAGCATTTAAAAAATATATGATTA
ACAATGTTTCGGAAATTTATTTAGGTTTATTTTTTCATACACGTTGTACATTTTTCGTAT
ACAATAGAAACAATTATTCAAAAATGTTTTGCAATCGTTACGTATATGACTGACTTTTTG
TTAAAATAAAATGACTAACTTTTTTTTCAAATACATGTTTTGACTACTACATTTTCTTTG
TACACATTATACATTTTTTATATATCTGTCTACCGAACGGTACGCTTGGCTTTCTATCGA
ACGGTTTTGGGAACATTCTAGATAATCTTTGCTGGTTTTTCAGGATTTGGGAACCTTCTA
GATAATCCCAGCTGGTTTTTCAGGTTTTGTTTCTCTATTTTATTTTATTTTCTATTTTTT
CTGTTTCCTTTTATTTATTTTTCTGTTTTTGTTTCTTCTTTTTTATTTTTGCATTATTTT
TTCAAGTTTTTTTATTTTTAAAAGTTGCAGAATTTTCAGCAAAGCCATGTTATTCATAGA
AGTTTTTCACGAATTCAAAAAAACTGTACATTTTTTCAAAATTTTCTTTGGGAGTTTCAA
AAAATATTCCTGTTTTCAAGAAATGTTCACATTGTCAAAAATTATTTGTGTTTTTAATTT
CCATTCTAGAGGCAAAAAATCGTTCGTGTTTTTAAAATTCATGATTTTTCAATTGTTATC
AGTTTTGTAATTTGTTCTGTGTTTCGGAAGTTGTCCCGGTTTTCAAATTTTGTTCGCCCA
TTAAAAAGTGTTCACATTTTCAAAAAATGCCAAATGGTTTCCGTTTTCAAAAATATTTTC
GTTCCAAATTCTGCTCAGGTATATAAAAAATGTTCACATTTTGAAAATTGTTCGTAATTT
TCCAACTGTTCTGAGTTAAAAAAATATTCAGAATATTCGTAAAATGTTCACGTTTACATA
AATGTTCTGGAATTTTGGAAATTGTTCATGTTTTAAATAAATTGCTCGGAATTCTAAAGA
TGCTATATTTTTCGAGTTTCTTACAACTTAAAATAAATTCATGTTTTCGTTTCAATTTTT
TCTTCACCTATATAGTTAATGTTCATATATTGAAAATTGTTCAGATTTTTTTCCAATTGT
TCTTAGTTTAGAGAATGTGTAATCTTTAAATCAATTCACTTTTAAAAAAACTGTTTCTGG
AATTTTGAAAAAAAAACTAGTTTTCAGTAAATTGCTCGGAATTTTAAAGATGCTCCATTT
TTCGAGTTGTTTACAAATTACAATGATTTTCATGTTTTCGAAAATGTTCAGCAGTTAGAA
AATTTCGTCATAATTTCAAAAGATGATGAGAACTTTCTAAAATTGCGCGTGTATGTTAAA
TGTTGTTAGTCACCTAAATAAAGTCTTCAAAATTAAAAAGAATGTTTGCATTTTTTAAGT
AATGTTTTGTTTACGCCGCTAAATTTAGATCTTTAGATTTACTCTCCTTTGTATTTCAGC
AATGATGAATAGGTAGGCTGGTAGGCAAATACATGCATGAGGTGTAGATCAGTTGTTTGA
ATCCCAAATTAGTTGCCGTTAAGTATGTTTTTTTTGTCCGACCGATCGCTCCAATTTAAC
TTGCATGGATGGCCCAGTCGAGCGTGTCACGGTATGCGGTAAATAGGAGCTCCCGGCAAA
ACAGGGAGCTTCTATGTGACGCTCTCTGCACAGGGGGCGGTTGACCTGGGCCGGCCCATT
CTATATCGCCTTTTCTTTCTTTTTGTTATGTTTTCGTTCTTGTTTTCCTATGTTCTTTTA
CGACGCATTTGGTTTCCCGCATTAGGCCCAGCCTGGCCCGCGCGGGAAGAGAGTGGGTTG
TTTGATTGTCTGTGTTTAGTGTGCAATCCGCATGGCACGAACCTTAAAACACCTATACGC
CAGGCCTAGGGAAAACTTCCGAATCGGCAGTAGCTCGCGAGCCTGGCTAGGGCGACGCAT
GGGAGGGTGGCATGCTTCTCTCTTTGTGCGATCAGGGAGATGGCGCAAGCTCGCCCGCGT
CGTCGAAAATCAATCCTACATCGATCCTAGACCTGTTTGTCGCACTGGAAAAGTGCAATC
CCGTCTGGGATTACATGTTCGCTCACTGTATTCGTCATATCCATCTTCTTCCCCTCTGCT
GTCGGGTCGAGCTCGACGAGCGATGCTGCAGCAGCCAGCACCGCGATGCGTGGCAAACTC
CACGGCATGCGGCGACACCCGTCACGACACCGAAACCAGTTAGAGGCCGTCAGCTCTCGG
GCGTACTCGCGCGTCTATTGAACGATTTATGCTGGTACGGATCAATCAAGCTAGCCCGCG
TACTTGTAAGTCACTACGTCCGTCAGCTAGCTCATGGAAAATCCATCCACATGCATGCCT
AAGGTCGCCAGGGACAAGCGGACGGCACGATGTGCTCTATATAGCGCGGTTTTGGCAACG
TCGAAGCGCGCATTCAGGAGGAAGTGGATGAGTGAGAGGCTGGACCAGCGCTTATTTTCA
GGATATGGTGCCAAGGGGACTGTGGATGTATATGACACGTGGGCCATGGACGTCAGCGAG
AGTAGACTGTGATCCTTGGCAGGGTGGATCTTTTCTCGGCACGTCAAACGGGTTCAGGGT
TGATATTGAGCGAGCGGGATCAAATAGATGAGGGCACCGACTTCAGGGATTCAGGCGTCG
AGGTTCAGACCCAACCAGTTATACGAGTTTAAGGTTTAAAATAGACTTTACTCCTCGCGG
ACAGAGATGACGGGATCCACCTACTACCACACTCGGCAGCATCAGCACAAGTCCATTTGC
CACCTACACGACCTTTTTTTCCAACCTGGCAAAGCTACCGGCCAAGTCACACCGACTGAG
CTCACGACGTACGTGGACGCGCTCCATGCAGCGACGCCGCCACGGGGTCTTCAGGTCGCC
ACGTCGCCGCCGAGCTCCCGCGCATAAATATCTCCCGTCCATGTATCGATCACATCTCAT
ACTCACACTCCTCAACCTGTTTCAAGCTAGCTAGGGCAGCAGCCATGGGTGTCAGGGGTG
GTGGTGTCGTGTGGTGTCTCCTGCTCGCCGGGCTCCTTCTCCTGGCCGTGGCCTCCGTGG
CGGAGCCGGACACGGGGAAGCAGGAGAAGGAGGAGGTCCGGTGGTGCAAGATGGACTGCG
ATTGGAAGGCGGGGAAGGACACCGGGAAGGCCGAGGAGTGCAAGGAGCAGTGCGAGCGCC
GCCGCCACGGCGACGAGCTGCTCCAGGAAGACGGCGACAGCTTCGACAGCTGCGTGAGCA
AGTGCCGTGGTCACGGCGGCTGGTGGGGAAAGGAACGGTGGGAGCGGTGCAGGCAGATAT
GCAGGCACCGCCAGGAAGGGGAGGGCGGCGGCGGCGACGACTTCGACGACGGCCGCCGCA
ACACCGACGACGACAGGTGCGAGAGGATGTGCCAGCACTGCCACGACCGGCGGGAGAAGA
AGCAGTGCATGAAAGGCTGCAGATATTATGGCGAGTCCGACCTCCTCGGCTTCGACGACG
ACGGCGGTGACAAACACGGCGACCGCTGCCAAACACGGTGCAAGCGCTTCCGGCCGGGGT
CGTACGATAGGTGGCAGTGCATTGTGAGATGCCAGAGCCAGCAGCAGGAGGACGACGAGG
AGGAGGAGGTGATGAACCACCACGGCGGCGGTGGCCGTGGCCATGGAGGCAGCAGCTGCG
AGCAGAAATGCCAGCAACGATACCGCCACGAGTATGATAGGCATCAGTGCGTGCGAGACT
GCAAAGGCGGCGGCGGCGGTGGCGGCGCCGGTGGGCGTGGCCGCGAGGGCGACGAACGCC
AGCACGACAGGGAGATGGTGGTCGAAGCCATCCTCGAGGAGGTGTAAGCAAATGCTGGAT
GGTCATGAAAGTAGCCACCTCTTTCCAGGATCCTCGTCATGTTGCTATGCGTACGTGGTA
GGTGCATGTGTGAGGTAAAATAAATTGCGGTAACTGGAAGTGGCTCTCCAGCCTTTGAGA
GAGCCTGTGTGTACGTCGAATCAATCTGGAAAGCTATGGGGGCATATAAAAGCAAAAATA
AAAAATTCACATGGAGCAACGAGAGAGAAACACCGACTCTGGGTTAATATTGAACCTGGC
AACCCCTTTTCCATTACTCACGTAACGGAAATACAAGTCCTGTTTGTACAAAAAGAAAAC
CAGAAAAATGGATGCGAGTTCAGAGCATTCTTGGGAAACCTACACATAAACTCGTCATCG
AGCAGCCTATCATAGGGCAAAAATCCAAGAACACCCATAACACGCACAGAACAACTACCA
AGTTTAAAGAGAAAAGCTGCAAATAGTATATTACACAGGTCCACGCCTGAGATTACTCCA
CACAGGGGAGGCCATCAACCAGAAGCACTAAGTGCCAGCAACTCCAACCATCAGCAACCA
TC