morexGenes - Barley RNA-seq Database

Contig contig_42623
Source Contig contig_42623
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42623 (7447 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_42623

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58387	6	1685 bp	MLOC_58387.1	Available	Available	LOC_Os01g01640.1, FRAME:-2, EVALUE:4e-80, 13101.m00088 protein Rer1 protein, putative, expressed
MLOC_58386	4	3932 bp	AK367463	Available	Available	None
CDS Structure of MLOC_58387

CDS Structure of MLOC_58386

Contig Sequence (7447 bp)

>contig_42623 7447 assembly3_WGSMorex_rbca.fasta
CCGCCCCCCCCCCGCCGGCCCGGCCCGGCCCCGGAGAAGAAGGACCCCCCTCCCCTCCCC
TCCAATCTCATCAAATCTCCAATCTTTTGGCCTCCCATTAATCTTCCCCAGCCCCGCATT
AATCTCCTTCCATTCCAAACCCAAATCCGACCCAACCAAACCAAACCAAACCAAATCCGA
TCCATCCATCCATCCCCATCGATCCATCCGCAAGCCACCACCCGCTGGCCGCGATGGGGA
CGGAGGATCCCGAGCCCCAAACCCTAGCCGCCGGGGAGCTGGTCTGGGCCAAGACCAAGG
GCCGCCACCACTGGTGGCCAGCGCGCCTCCACTCCCCCTCCACCCAATCCCCCCTCGTCT
CCTCCCTCGGCGCCGAGTACTCCGACGACCACCGCCCCGCCGCAGCCGTCAAGCCCTTCC
TCGCCGCCCCCGACGCCGACGCCCTCGCCCGCGCCAACACCGGCCTCGCCTTCATCGCCG
CCGTCGCCCACGCCAGGGCCACCGCCGTCGATATCCTCTGCGACGCCCTCACATGCCCCT
GCGCGCGCGACCCCAACTCCCAATCACCCGACAACAAAGTCGTCATCACCACCGTCGCCA
ACCTCGACCCCCGCGACTTCCTCGCCGCCCTCGCCAGCGCCGCCGTCGACCCCCCCGCCG
TCGGCCTGCTGGACCACGCCCGCCTCAACAGCTGGGTCCGGGCGCTCGCCCAGGGATGGG
GCCCCGACCGCTACCAGCGCCGCACCCAAGCCGAGCTTGCTGACAAGATTGACCTCGACA
TGCTGGCCGAGGACGGCGCCGCCTCCGAAGACGAACACAAGGAGGACAACAAGGCCGTCC
CGGTGCTGCTGCCACACAACAAGACACCCAACCAGAGGAGGAGGCGCACCAAACCCCCAC
ACATGGACAAGGAGGAGGAGGACAAAGCCGTGCCACACAAGACGCCCAAGCCAACGAGGC
GCGCCAAAGCCGAATCCGAAGAAGAGGAGGAGGAGGAGGAGGAGAACCTCAGCGGCAATG
CCAGCACCCAGAAGAAGGAGGAGCAGAGCGGCACTGCCCGGTCGGGGAGGCGTGAGCGCA
AGAAGAGCAAGTATCTCTCGCCGCCCTACACCAGCATCGGCATCTTTGCTCTTGAGGACA
AGTCCCCCGATTCGCCAAAGAAATCGCCCATCACCGGCGCTGCTAACAAGGATGAGAGGA
AGAACAACAAGGGGTCACCACCAGAGGAGAAGCAGCATCACAAGAAGAACAGCAAGGTGG
TGCCACCGCCGCCGCCGCCGGAAAATGTAGGCGCACAGGAGGTCCTGCTGCTGGTGCGCT
GCTTCGGGGAGGACGTCTCTCACAAGAGGCATTTTCCCAAGGCCGCAGAGGACTTCCTTG
GGCTGCTTAGGAGCTCCGTGTTTGCCGAGGGTGCTGACCATGACTCCTACCGGGAACATC
ACTGTCCAGTGGCCAAGAATGCTGGTGCAGACGTCCCTATTGCTGGCCTCGTTTCTGATT
CAGGTGCTGCTTTGAAACAGGGCAAGGGTAAGCGTGGCAGAAAGAAGAAGGACCAGGATG
GCACTGGCGATTCTTCTGTCAAGAAGAACAAGGCGGAGAAGACCTCTCCCGTGGACGCTC
TTGACTCTCCAGCGGAGAAGAAGAAAGGGGAGAATGTTTCTGAGAAGAAGAGGGGCCGAA
AGAAGAAGGAGCAGGATGGAACCAAAGGCTCTGTTATCAGGAGGAAGAAGATGGACAAAA
CCTCCCCAAAGGCAACTCTTGGGCCTGGCTTGGTTATCACTCCCGCTATTCCTATCAGGC
AGGTTAGTGCTGAAGATATCATGAGCCAAGTGAAGTCAGCAGGCACGGGAGCTGGGGTTG
CTGATCAGAAGAAGAACAACTTGCTGGTGTCCAAGAGCCCTATTTCAGCCATAATGTCTG
GAGGTGTAAAATCAAGAGAGGAGCAGGACCAAGCAGGAGACGGCGGTCCAGTCGTTAATG
CACAAGTGAATGCTTCATCTGAGGAAAAGAATGAGGAGGGTACCGTGGAAGCAAGTACTG
ATATGAATGTGGATGCTCTTGACGGAGATGTGCCTTCCCAGGGTGCCCATGCAGATGTTT
CTATGCTTGAAACTGATATGAACGTGGAAACTGATATGAACGTGGATCCTCTTAGCGGAG
ATGTGCCTGCCAAGAGTGGTGCCCAGGCTCAAGTGACTATGCCTGAAGCTGGTATGAATG
TGGATATTCTTAGCGGAGATGTTCCTGCCGGAAGCGCCGCCCAGGCTCAAGTGACAGTGC
CTGAAACTGGTGGTTTTCAGGTAGACATGAATGTGGAATGTGTTGGTGTTGTAGATGTGC
CTGTCGCAGTTGTCCAGACGGAAGCAATGGACCTGGAAGCTAATATTCCTGTGGTAGATA
TGAATGAACAAGTTGCTGCTGTGGCAGATGTGCCTGCTGCTACAAGTGGTTTGTTGCTTC
CTACGTCCCAGCCTGCAGCTGGAAACAAAGACAGCGCAAGTGTGCAAGTGCGTGCAGCCC
AAGAGTCCTACACATCTCTGATTCAGGCGATGCTGCCGGAACCATACAAGAAAGTGGAGG
AGGTGTCTGCTGGAACAGGTGTCGTCGCGGCGCCTCAAGGTGAGGCTCAAAAGGTTGAAC
AGACTAGCCAGAAGAAGGCAGTTGCTGATGGAGGAGCTACTTTTGCAAACCATTCTTCTG
CTGCAAAAGGCACTAGTGCTACCAATGGGACCCCCTGCCCTGATGCACCCACCTCTGGCC
AGAAGAGGAGGAACAAGAAGCCTGCAGCATACTTTGCAAACCCAGCAGAGATCCGGGTGA
AATTCAAGGGTGGCACCATGATCCCGACCAAGGATGAGCTGCTCTCTGAGTTCCGCAGGT
TCGGCGTCCTGGTGGAGTCGGAGTGCGACATATCGGAAGAGCGCCGCGAGGCCCGCGTGG
TGTTTGGGAAGAGCACGGAGGCGGAGGCGGCCTACACCAAGGCGGAGATCCCAGGCATCT
TCGGGCAGTTCGGGCCTCCCTGGGCCACCCTGGGGCTCAACTACCTGGAGGCCATCACGC
TTGTGCCCCCGGCTCCCAAGCCCCCGCTGGCTCGTGCTGACATGAGGAAGAACGTGGAGA
ACATGATCTCGTCCCTGAAGAACGGGCGCTCTTTGCCCCTCAACATCGGAGCGGCGTTCC
CGGCCGCCGCTGGAGGAGGAGCGCCCGTGTCGGAGAGCCTCCTTGCTGAGATGCAGCGGC
TCCTGTCCAAGCTCGACAAGACGCAGCCGCCTCCTGGGCCTTCGGGCTCGGCTCCGCCGT
CGTAGGCCCCCCCTTCCTGCCGTAGTGAGGGATGGATGGATGGATCTATGGGGCTTGTTG
CTCCCTAGCTAGCTACTAGTTATTAGTGAAGTTGTTTCTGTTTGGGTCTAGGCAGGCATG
CACGGACACACGGACGCATATGCTGGATGAATGTCTTTTGTTGATTATTATTAGAGACGA
TGCTGCTGCTGTTGCCTTAGCTTTAGCTTTATTTGGATTGGAGCTGTTGATGATGAAGTG
AAGTGGATGAACTAGTGACCAGTTAGTTGTTGATGATGGATCATAAAACTGTGGATGAAC
TTGACAATGTTATTTTGTCATCATCATCATTTATTTGCTGTTTGCTTTTCTGTCTGCATC
GTATCATCATCATCATCATATATGAAGGAGTACATATATATTATCATCATCAAGGTTAGT
GAATTCATGATGCTTGTGACTAGTGTAGTTAGCTAGCATGCTTTCCATTCCAGGGGACTT
AGATAAGAGAAGCATTGATTCCCAGTGTGTATGATCCTCATGATGAATGAATGAATGAAT
TGCACTCATCATTCCAGGGGATTTACATAAGAGGAGAATGTGCTTGCTGTTGCTGATGAG
TAGCAACTAACAAATAACCACAATACTACTGGTTGTTTCCATATAACCTACCTGAGTAGT
AGCTAGCTTTGAAGGTGATTGGCTCATCAAGTAAACAAATTACTTTCCTCCGTTCCTAAA
TACTTAAAGTCTATTTAGAGATTCAAATATGGACTATATACGAAGCAAAATGAGTATACA
TCCTCTGTACATGCTTCATGTTGGAATCTGTTATGACCGGTACTACATACCAACGGAGGA
GGCCCAACGGGCAAGGTTAGTTACGGGCTTTAGCCTAAATTATCTAGCTATCTTAGAGTC
CAAATTATATTAGTTATCTTAGAGTTCAAGTTACTGAGATTATATAAACAGATGTAAACA
GTTATTTTGGAATCAAGCAATAAGATAATTCTATTGCCCGGCTCCCATTTAGTGAAATTC
TAAAGACTATTAAATAAGTTAAGTAAAAGTGCAAAGTAAGTTCACTCTTCAAAAGACGTA
TTGTATTGTCTTAAGAGTTCACCCATCACGATAAGCTTTCCAAAACCGCATAAAGCTCTA
CTCTTCATAGAAACTTTCAAAACGGCTCCTATACCAAAACCACATAAAGCTTCACTCTTG
TTGGCGGTGTGAATCATGTTATGTGGAGGCCGGACATTCTTTCAATGCGATTGTATCACC
TTGACAAATCAATTGAATGAAATGCCTTTTACCGAAAAATAAAAAAACAACAAGAACGCA
CATGATCCAGCCCACTAGCTCCAAGCAGCACTTATGAGATCAAATATAGCGTGATCCATC
ACCGTCTATCAAATAGCGAGGTATAGCTCTTGCTTCAACTACGAGTGCCCATACGATCAA
TTTTTTTTTTACTTGTTTTTAATAATTTTGAGATATTCTAAATATCCAAATATTAATTTA
CTTATATATTTTTAAATCATTCATCTTATGTTTCAAAAATGATCATACCATTCAAAAAAA
TGATTCTGACATTCAATAAAATGCATTTGACATTTTAGATAAAAACAGTTCATGCGTCTC
AAGAAAAATATTGTAAAAAAGTTCAACATCCAACGTACATTTGAAAAAGTTTGCATATAT
TTGGACTATAAAAAGTTAATAACAAACCTAGCGGAAGCTTCCAAAACCAGTGCAAATCAA
CGAATAGAAGGTTCCAAGAAAAACCACAGGAAGGCACATAGGCAGGCCAGCTAGCAAGAC
GCGAGATATAGCTACCGCGTCAACTATTATGGTTAGTAAACTGGGCCTCATACAATCATG
TATGATGGATCTACTCAAAGATGCTACATTTTCCAGCAACATTCAGGGCACATATTTTCA
CCAAGCATAGAATTGTTCAGGCAGCGACCTATCAACAGCAGAGTTGGATCTACGATTTCA
CAGCACCACCTACTTATTTCTGCTGCAACAACATTAGGAGCAACCGGAGCCGAGACGGTT
GCCCCGACAGCAGAGAATCGATCACGCTATACAATGACTGACAGTGACACAAGTAACATG
AATATATGGAATTAAACCGTGAACCCATGTCGGAAACATAAGCAGCGGATGTCCCTCCTA
GCTCTCTCTAGATATCATGAATGAAGTATTACACTTGTTGGTACTATGTAGCACATCGAA
TAAGCCTCGTCGACTCTATCTTCCCCCTGCCCTTCTATTGTTCCCTTGCACACCGGGGTG
CGCCGCCGGGGATCAGTCTTTCGACGAGCTGCTGCTCGCGCCACCCTTCTTCCCGCCGTA
TTTCTGGCAACCCAACCGGAGCAGACATTATATGATAATGATGAATGGAATGGTAAAGGA
TAAAGGACGAGATGGAATGATATGCTATGCACACCCAACCGGAGCAGACACTATATGATG
ATGAATGAAACGGTAAAGGATAAAGGACGAGATGGAATGATATGCTATGCACACCCATGA
TACCAAGAGGAATTGATAACAAAAAGAGAGCAACTAACCTGCTTCCCGATGTTGAAGGGC
ACGTATTTGTACTTGACCATGTGGAGAATCTGGCGCTTCATGGTGAGCACAAAGAGTACA
ATCCAGTAGCAGAGCAGTATAGGCCAGAAGACAGGGACGTCGAACACGGAGAAGAATGTC
ATGACAAAAGCTATAACAAAAGCCTTTGTGATTGCATACCTGGCAAACAAATATCATGGG
ACACATGTTGTATAGAGGAATAATAATGTAATAATGTGCCACACATAGACATGTGAAACA
GGGCAAATATAAGAAGAAGCATGATTACAATTACAAACATAGAGGCGATTGCAATCGGTA
GCTAAATATGCATGCATGCATGCCAGTAAAAGCAGTTTGTGATTTTCTGTGTAAGATAAG
AAAGATTGCAGGCAGCTAATGATGGTTGTATGGGATCAAAATAGATAGGTCATATACAAC
ATGTAAACTCAGCAATGCGTGAATGAAGAGCTCAAAGAATCATTCAAGGTGTTTGTATGA
GTGAGTGACTGCTTATCATGTGTATACTAAGTATGAAGCTGGTTTGTATGGTAATAGCAA
TAGGGAAGCCAACAAATAGAGAAACAAATAGATACTCCCTCCGTTCCTAAATACAATTCA
TTCTTTTTACCCTAAAGTAGTTCTTTTTACCCTCGGGATCGCGATCTGGAGGATGGATGT
TGTGGATCTGGATCTGGATCTGGTTGAGGAAGATACATACCAGAACTTGAACTCGGGCAG
CCTCCTGATGAATGGCTTGAACTCGTCGGAGCCGCGGGTGGGGAGGGCGGGCCCGTCGTT
GGCGGCGGATGGATCGAGCTCCGGGTCGACCATGGGGGAGAGGAAGCCGATGAGGAGGTT
GAGGAGGTAGATCCCGAGGCCGTAGCTGACGATGTAGAAGCCGTGGATGGACAAGACCCT
CAGCGCGTACACCGCCGCCACCACCAGCGTGCCCAGCCACCGGCCCGTCGAGTGCGGCGT
CGAACGGTCCAGGTAGTACTGGAAGGCCCGCGTCCCGTCCGTCCGCCACTTGGCCACCGC
CGCAGCAGCGCCCCCGCCCCCGCCGCCGCCGCCGCCGGAGTCCATGCCTGCTCCTGCTTC
TGCTTCTTGCTTTGGGGGGATCGGGATCGGGATCGGGATCGGGACGACTCTGCTTTGCTT
TGCTTTTCTTTTCTTTGGGACCGATCGTTCCCATTTATCTTTTACTGTAAAAATCAAATA
AATACCAACAAATCAAATAACATTATAAACATAAATAGCATAATCAAACATTATAGTCAT
CACGGCCACCACAATGCTTACAACATAATTAACATAAAAACCAAAAATAAAATATAATCG
CCGCCCGCGCGTTGCTGCCGTGCCCGCCGTTGTCGTTCTCGTCACCAGTGAGGTCTATGT
AGGGCGGAGGCGTCCAGAGGTGGGACGATGGTCCCTAGTAGGTGGAACGCGCCTGCACCA
CCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGCACACGCCCAC
CACACCGCACCCACACCAACCACCCCGACCATACCATACCCCACTATGTGCGCGCAACAC
GCCACGG