| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_42596
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_58359 |
4 |
2328 bp |
MLOC_58359.1 |
Available |
Available |
LOC_Os10g34614.1, FRAME:+3, EVALUE:3e-33, 13110.m03083 protein csAtPR5, putative, expressed |
| MLOC_58422 |
2 |
2722 bp |
MLOC_58422.2 |
Available |
Available |
LOC_Os02g01590.1, FRAME:-1, EVALUE:0.0, 13102.m00080 protein glycosyl hydrolases, putative, expressed |
CDS Structure of MLOC_58359
CDS Structure of MLOC_58422
Contig Sequence (7874 bp)
>contig_42596 7874 assembly3_WGSMorex_rbca.fasta
ATGATGATGATGATGAAGAAGAACATTTGGTCACAAATTTTAAAAGTATTCGCGTTTTTA
TATTTTGTTTGGAAGTGGCAAAATATGTTTGCGTTTCAAACTTTTTTTTGTTCACAAATT
GAAAACTTGTTCATAAATTCCAACACTTGTTCAAATGTTCATGATTTCAGAATGTTTTGG
AATTTTTAAAAATGCTCCCAGTTTAATAATGTTTGAAAACGTTAACAAATTATACTAGAA
CATTTTTCAAAACTCCAGAAAAAAAATTAAACATCATATTTTTTTGGAAATGGGAACATT
TTTTGAAATTCCGAATTTGTTTTGAACATTTGTCATATTTAGAACGAAAACATTTTGAAC
AATTTTAAAAAATAAGAACAATTTTTTAAAATTCTGAACATTGTTTGTATTTAAGAACAA
TATTTGAAAACATGATCAATTTTAAATTATTGAAATTTTTAAAGAATCATGGACATGTTT
CATTTTGATTTTTCAAAACGTGCGATTTTTTTGATATAGCGGCCAATTTTTAAAATTACA
AATTGTTTCTGTATATTTGAATATCTTTATAAAAGTCCAAACAAATTTGAAAACAATAGA
TTATGGAAACATTCACATTTCTTTAAACTCATGCAAAATGTTTCAAACATGAACACTATT
GGATAATGGCGAGCATTTGTGAAAACACACGAACAATCTTTTGAAAACAAGTGAAAAGTA
AAAAAAAGAAAAATGAGAAAAAAAAACAGAAAATAAAAAATAGAATAAAAAGAAAACAGA
AAAATATTAGATTTTTTTGTATAATCTTGAAAGAAAAAAGAATAAAAAGAAACAAAGAAA
AAAATGAAACAGAGAAGAATGAAATAGAAAAAGGCACAGAAGAAAATCCAGTTGATCACG
TTTAATTATTGAATAAGCCTGCAGAGCGAGCTGGCCCGGCCAGTTGATCGCCCCCGTGCG
TTAGGCCGACTATGTGACGCAATGAGTGTCAAATAGGGTTTTCCGTCCCAAACATACCCA
TAGCATTTGCGCGCATCGGCCTCCTGTCGGTATGTCTCCCTTTACTGGGCCGGGCCGAGG
CCGAGATGCAATATAGCACCCCCCCCCCCTACACACATCTTTCGCCGAAACCCTAGCAAA
GACCGTCTCTTCCTCTAAATCCGAAGGAAAAGAAAGAAGAGCGACGGGGTTGGCGGCGGA
AAGACAAAGAGCGGAGAGCGGCCTCGTGAGCTGGAGATGGAAGGGGAGGCGAGCGGCAAG
ACTGGTGAATCTGGAAACTGCATCGGCCCTATACACATCTTTCGCCGAAACCCTAGCAAA
GACCGTCTCTTCCTCTAAATCCGAAGGAAAAGAAAGAAGAGCGACGGGATTGGCGGCGGA
AAGACAAAGAGCGGAGAGCGGCCTCGTGAGCTGGAGATGGAAGGGGAGGCGAGCGGCAAG
ACTGGTGAATCTGGAAACTGCATCGGCCATGGTGCTGACATCCAGAGGAGGAAGCAACAG
GAGACAAACTCGGAGATTGAAGCAGCCAAGAGGGGTCATGCTGCGGCATTGATTTCCGCT
CCTACTGACACAAAATTGGAGATGGGGGAAACTGAGGGGATGAAGGAGAACATGCTGTCG
GAGATCCAGAGGAGGAAGCACGAGGGGACAACATCGGAGACTCAGTCGGCCACGGAGACG
GTTAGGGCTGAGATCTACTCCTTACTCAATCTTATCTCCAAGAAAGTCACGGAGCTGAAA
GCCGAGCCGAAGCCGAGGATTAGCGACGAGGTCCAGATCCACATGGATAACATCTACAGA
GAGGTGACGAATTTGCTGCAGATGATGGAGAAAGTGCAGAACAACGAGATTCCGGGCAAA
GAGCCATTCTCGGAGAAGATGGGTGTGGAAGGGATCCAGATTAGGACTGAAGACAAGTGT
GGATCAGCAACCGAGACGCAGGGGTCGACCTACTACGAATACAGATTGAATGCAATCTTC
AACGGGTTGAATCAGCTTTGCACCCAGTTGGATCAGATGGGACATCTTAGTTACAAATCT
GAATTGTTCTCCGAGCTGCTCAAGGAGCCGTTGGTCAACACGACCAACATCAAGTTAGGA
ACCAGAATCAAACTGGATGAGGTGGACGAGACGCAACCAATAATTTCCATGGAGACTCTG
GAGGCAGCCAAGGGAAAGTACAAGCCTTTGCCGAGGATTTCCACTTCCAGATTGATAATA
TTGGAGACAGAGGAAACCCACGAGATGGCAGTTAAAGCCAATGAGAAGCTCAGGAAGGCC
CTGATGATCAATAAGCAGGCAGAGGAGTTCTTTGATGAGTATCGTCGTGGCTGGGTATCG
AATTGGTCCAGATCATACGGTACCTTCACAGAGACGAGTGAGTAAACATCCATTCACACC
ATATATCTGTTCATTGTTCATTGCGTTTCTTCTTTCCAACTGCATGCATGTATCAAGCAA
GCATACATAGTTTCTAAATAGTCTTCCCCTCTGATGGCTCCAGCTTCATTGAGTCCTATG
TACTTTACACACAGTACACCAGGACACACACCATCTGCTGCTTTCGTTGCTAGCACTCTG
CAGATTTACTCCATCGAAGTTAAAGAAATAGAAGATGTTCCAGGCTTGAAGTGGCCACTG
GAAGTGTACGGATTGATTGCTGCAAGAGACACCGTGGATCACAATCGCAACATACTCTTT
TTCCGTCGAAGGAATAACTGCCAAATACTCAATCCAGAGGTCCGTTTAGTATTTTTCTAT
TTTATCTTTCCTGGTCTGTTGATTAGTTACGACTGATGCATTTAGAAATACACATCTAGT
TAAGAACACATATCAAGCGATTGCCCACTAAATTGCTAGATTAACAAAACTGATTAATGA
ATGGTGAATGCAGGATCCTTTTTTGCACTTGACTGGCCCGTCTCGTGCAATTGTATGTCG
GGAACCTGTTTATGTGGAAATAAAGCTGAACGTGAAGGGTAGAACAGAGTCTGAAGATAT
TGCGTTGATAAATCGTGTCTGGTATTACAGCGGTAGTGGGGTATGTACTCTATATACCCC
TCTTGCCGGAGGCTTATGCACAATGGTGTTAAGCTCAGAGGAGCTTCGTGAATCAGTCCA
GGCTACTATCGTGGGTATCCGTCTCTGTGTTCCCGAAGAGACACCGTGTCTTTTTAAAAA
CGGCGGCAGAGTTGTTTGCTTCTCTCTGCCTCGGAAAGGCAGGCCTCAGAAAGGCAGGTT
GCCTAACAGTACCCACCCTTCATTTCGGCAAGTTGTGCTTCAAGATGGAGCAATGACTAG
TTGTTCAAAGGGTTACCTTAATCTGTCAAGGCATGCTGTCTCTGTGCAATTATGTGGAAC
GCTTGAAGTTGTCATAGAGGCTAACTCGCAGTCTGGGACTATCAAAGGTGAGGTATCCAT
CAAGGCGCAAAATTGCAATATAACTCAGGATGTGTGTCAACTTGGCGACTCTGTGCTGGA
AATCACTGTTGCTTGGTCCCGTCTAGTTCAGGACAAGCTGTGGATCTCGATGGAGGGAAG
TGAGGAAGTTTGATTGAGCTCAGACTATTAGTATTTCCAGTGTTCAGTATTGTATAACTG
TATTTTGTATTTCCAGTGTTGTGTATTGTACTATTAGTGCATACTGCAGTATGTCACAAA
ATAGGTGCTGATCAGTATATCACAAAATATCTGACTGTTTATGCATCCATCAGACTACTC
ATGCACCATCGGATTAGAAGAATTAGGGGCGTCTGATCTGCTTCCTAGGACCCATGTGGG
AGGATGTTTTGTCCAGTTTATGCAAAAATGACACACCTCAAGCTTGAGACAAAGTATTGT
GGGATCTCTATTGTAGTATGTCATTGTGCTTCAGGTGTTCCAGGCCTGGCATCAGTTAGG
AGATGCTGCAGCCTTGCATGAGTTTGGAAGGAGGAGATGCTATAAGTGTGTTTAATTGGC
AGTTCAAAAATTTCCCCGGTTGTCAACAATGGAGATGAAGACATATATTGAAGACAACAC
CTTTTGTTTCGTTTTTTGGGTGATTTTGATGAGAATTGGGCTCCGTTTGATGCTAGTTAA
TGTTGAATGGATATTTCTCCATTAGGCAGCAAGACCGTGTGATTATTGGGATAGTTGTAT
GAATTTTGTTATAATAATTCGATGGAAGCATAGTGTGTAGATTTGTGATGCACCGGTCAT
GCTTGGTAGAAGCTGTGAATGCCCATGTTCTGTAAGTTCAGCTATGTCATGTGTTTCTAG
CATACGTGTTCGTGGCCTGTATCTAGAAGCATTATGTGTAGATTTGTGATGCACAGAAAA
TGCATGGTAGACGCAGTAGCATCCGTTTTCATGGTTTGTATGTAGAAGCATTATAGTTTG
CCAGTTCAAGGAGATGATGGAGGAAACAATATCTTTGATTATAAATCCAGTAGAAGGGAG
GAGCTACATATGACTGCTCATGCAATCGATTCCACATGAATGGGGTCTTGTATCATCACA
TGTTAAAGTTCATGGTGCATACTAATGTGCAAGAAATACAAAAGAAATATTTGCTTCATA
GATGTTTTGATGAAGCAACCTTTCGCCAGGCTAGAAGTGTCCCTGAAACAAATACAATGA
GATTGCCTCTATTTGGGGGGACACCTAGTTCTTTTGATACCATTTGTAAAGTAAGGAGGA
CGGGCACACCAAGAGAAATTGCCTCTATTTGGCGTTCGAAAGACGGAGGCAAAAAGAAGA
ATTGGAAAGAGTGAGCATGGAAATCTACAATGACCCTCCGAAAGGAGCCAAACCTGTATG
TGGGATTCCCAAGCTAATCGGTTAACGTCGAACTTTGTGTAGAAACCACTAGTGAGACTC
ACGTCTCCTCTATAAAAATATAGATTAAGCAACCGTGAGTACAAATGTACTCAACAAGAC
TTACATCAGAACTATCTACATACACATCAGTATCAACAAGGGGGTTGTGGAGTTTATTGC
AGCAANNNNGCTTTGACTCTTGGCTAACCTCTACTGCAACTACAAGTACTTTCTTTGAGG
TGAGAGAGCACACACGACTCCGGATATTCACCAGATCAATACACCACTATAGACCCTCTC
TCGTCTGCCTACGAGAAGGCCATCCATATCACTCACACTTATCATGTGCATTTTCGAGTA
TCCATTTAAAGTTATCTATGAACAATGCAAGTCTTCAAGTAGTCCATATCCGCGGAAGCG
GCTATTCGAATATATAGTTTACCCTCGAGGGGTATACTTCTTTACACACGATCTCACCAG
TTACCACTACATGCACGTCATGTACTCGACAACCTTCAAACGAAAGCGTGTCGTGGGTGT
CGTCCACAACCGTTAACGACACAAGACTCTACTCCAGGTTTACCGCCTATTTGAGCCTGA
ACCCTCAAGGAAGCTTGGTCGAAGTTTCCATTACGGCCCAAACAATGTGAGCAGGGTTCC
ACAAGCCCACCATCCGTGTGCCACTTTGTACACCATACCACTGTGCATCTACCGTACTGA
AGCCCACCCCATCGGGCAACGCTACACTGATGATGATATGGCTACCTTGGATATGATCGC
ATTTATTGCACTCTCATATTTATTTGAGGTGATTTCTAATAAAATTTATGCAATAATTTA
TTTATGCCACACAGAACAAAAGTACTTCACCTCTATTTCATGCCTAACTGCAGAACTACC
AGACACTTGTACAATCCACATATGAAGATAAGGGGAAAAGAGACATTTAGGTTTTTTCAA
AAAGTTCTCCCACGTCACTTTTCGCCCAAGAGAAGATAGAGTCCAAGTCTATAACGTTAT
GGACTCAGATTCAGACTGCAAAGACATACCTGTCTTAAAATGCCAAGAACTTTCCCATCT
AGACTCCAAATTGCATGATTCTTTCTTTGTTGGAAAGTAGATTTCATATACTTTCCAACC
CAATTGGATCCACCTTCTAATTTGTCGGGAGAATGGAGATATTGGAAAAAAAATCTAACG
CTACAGCAGAATCTGAGTCAAACTATAAGTCAAAATGTGTTGCATCACCTTCACTTGGGC
CCATGGGCCTTGTACGACCTAGGGTTAGTTTTAGGCTGCCTTTGGACATCATATCACCTC
CTTGGTTTTCGTATATAAGTAGATCAATCTAGTAGCTTTTTTGCTTGGGATTTGTTTAGT
TAAAAGTTAGTCATTTCAACTTTGATACTTCGTTTGTGTCCAACGACCAGACCAAGACAG
CTTTCGGATCCTTACCCTTATCAATACTTCATCTACATTCACAATATTCATATTGCTTTT
ATCATATTCTTGCTTATTCATCAATTGCTTGCAGGAAAAGACCTTTATGGTCAGGTTGAT
CGTGCTCAGGCGTGGACAATAACCTGCTAGAGTTGGTTTAGCGACTACTAAGGCGCGACA
TCGTGCATGTTTGTTGTCGGATCATCAAATCTTTATCCACCAAACTGATAGTTATCACTC
ATCGAAAAATTGGGACCCTTGCCTCTATCAAGTGGTATCAGTTTTCACGTTGCTTGATGT
GATTTTAGCTATTTTTCATAGTTTAGATCACATATGTTTTTCATACTTATAGTCCACAAA
AAAGCCACAAAAAAATTTAGGGTCAGATCATCATCTCCGAACCTATATGAGCCTTTGCAT
AATTTTTTTAGTGTTTTTTCTTTGCTGAATTCGTGGTTGCATCATCGTGTCGAGTTGCTG
GTCCTAGTGTCTAGTTCCTTTAGAATTTTGAGTTCTGTTCACATTGGTCACACCATCGCC
GCGTCATCATCCCTTCTGTTGTCGCCCACCACCATCCATCAGTTTTCATCACATTCTCCC
TTTTTTTATTGTCATTATCATACTTGAGGTCTTTCACATCTACACTTGATCCAATCTGCA
TCTTATTTGGTTTGTTGTAGAGAAGAAAAAAGAAGAAAAAAAACTATAAAAAGTGAGAGA
GAGAAAAAAAAGAGAAGAAAAAATGTTAGTGAAAAAAAAGAGAAGAGGAAAATAAAAAAA
TCCGGATCTACCTAGACTCAATGTCGGGACCCCAATCCTAAGCCACACAGATCTAGCATG
TAATACATCATATACTTTTCCGGCCTCACGCACGGTACACAACTGCTGTCACCTTACCTT
GGCCGAACCTTTTGCGCATTTTGGCTCACATATATGATTATGTCGCTACCATCCATATGT
GAGAGAACCCGGGTCTACATGACTAGTTATATACCAAAGTGGCACAATCGTACACGGACA
AGCATACATAACCCAACAATGCAGGTGTCGGTCATGAGCGTGTGTAGACGAGTCATAGCA
CGCTATAAGGACTCCATTACACCACGTGACATTCCTAGGTAGGGACAGACACATCAACAA
AGAAGTATACATGTCGGTCAATCAACGTGTTCGGAGCAGTAGCAAGCTACCAAGACTCGG
TGGAAGCACAGAGGCATTTCCACGTAAAGAAGGCTACTAAAGGCATACAACTAGGCGTCG
AATCCCACACATACTAATGCATTTCAAACATACACACAATATGCACGATATTTATTGATA
TAACATGGCATCACAACATAACTCTACAATATAACATTTATTAGAACACTTTGAAGAGCC
AACATAGCATAATGTTACAAGCAGGGAGGTCACATGACCCAACATTCAAAGCATAAAAAT
AACATGCAGAAGTTACATGTTTGGGTACAGACATCTACTAAAAATGGCTGGAAGAGCGTG
AAAAGCTACATCATCCCTACTAAAGGAGCTAGACCTCTGTCTCGTATTCCCAAGCTATTC
CTGTCAACATCGAATACATCACATAGAACTATTAGTGAGACTAAGGTCTCATCTGCAAAA
ACATAAATAAGCAA
