morexGenes - Barley RNA-seq Database

Contig contig_42574
Source Contig contig_42574
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42574 (8922 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_42574

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58338	1	924 bp	MLOC_58338.1	Available	Available	LOC_Os01g38490.1, FRAME:+2, EVALUE:2e-26, 13101.m03924 protein expressed protein
MLOC_58337	3	2256 bp	MLOC_58337.1	Available	Available	LOC_Os08g17294.2, FRAME:+1, EVALUE:2e-114, 13108.m01848 protein PSF3 - Putative GINS complex subunit, expressed
CDS Structure of MLOC_58338

CDS Structure of MLOC_58337

Contig Sequence (8922 bp)

>contig_42574 8922 assembly3_WGSMorex_rbca.fasta
ACTCCATGGCGACGCATGATGAGCGCCAATGGCGGGGCCTGGACCGCACCATGGCCCTCT
CTGCGGTCGTAGACGTCGCCATCCCCAGGCCGATGGAGGAAGAGGAGGTGGCCGCGTTCC
CTCCCGAGCTGGTGGGCGCGTCGTGGGGCGGGTCGTGCACCGCGCCGGAGATGGCGCATG
CAGTGGGGGCCGTGAACTGGTGCCCCACGCCGCCGCGGTCACCGGAGCGGGAGGCCTCGC
CACGGGAGGAGATGCCGCGGTCACCGTTTGGGGTCGTGCAGTGGAGTTGGCCTCACCTTT
CTATGTACTATGTGTTCCCGTTTGCGCATTCTTTTCTATTCCTAATGTTTATTACATGGC
ACGATTGTCTGAATTCTATGCAGGTCTTCAGGTTTTGTTTTGCTTGGTGATGTATGTTGC
GTTCCAGCAAACAATATACTCCATCCGTTCTAAAAGAAAGAATTGTTGGTTTAGTTTGTC
CTAAGTTGGCCCCCCTTCTATTTGCTTATACCTGTCTTAATCAATTAGTAGCAGAGCTAT
TCCATTCACCCGTCTTAATCATAATAAATTAGCAGTAGAGCCATTCCATTCACCTGTCAG
CAGAAAAGAAGCACGAGCATGGTTCTGGGATATCATTTCTACTGGCAAAATAGGGCACAA
ACAAACTAGCGTTTGCTGATTTCATACAACTGAAACAGAAAATTTCAAAAAGCCTTGGAT
CGCCTTTCTGGCCGTGCAGATATCTTCGAGATTCATGCCGACAGTACTCTCGACAAACAT
TATGAGCAAATAGTCGGATTTCTCCGCAATCAAGACAAGCACGCTCTGAAAATACGAGTA
AAAATCGAACCTCCATAAAATCCATACCATACACAAGAACAGCATCCAGTGTCGATCACC
GATCTTATCTGTGATGATGATCCTCCCCACACGAATTTCATTTCTGAAGCGGCGAGATGC
AATCCTGCTGGATCTATGGCGACAGAGGAGTAATGTTGCTTCAGCAAAGGCAGATCACAA
CCTCACGACCGATCTGTGGGTCGGGAGCTCAGCTCATCTGCTCTGCCTAGCGCGGAGGGA
GCGGAGGCGCTCGAGCCACTGCTCGTCGGGGACGCTGCCGGCCCACGGCGGTGGCGCGCC
GGGGAACGCCACGCCGCGCATCGCGTCCACGATCCGGGCCGCGGCGCCCACCGGCAGCTG
GGCGCGCCGCCGGCGCTCGTCGTCCAAGGAGGCCGCTGCCTCCGTCGCCTCCTCGCCTCT
TTCTTCTCCTTCGTCGTCGTCGGAGGCGAGATCCAGCTCGGAGACGCCGTTGTCGATCGC
GTCGAGGCGGCGGCGAGATGCGAGATCCGGGTCGGCGTCGCTGTCGGTGTCTGAGTCCGA
GGCGGCGCCGGAGATGGGGAGGTAGTCGGCGGCGTCTCCCTCGGCCTCGGAGTCTGAGGC
GGAGGCGGAGGAGTGGTCCGGCAGGCCGGTGGAGGCGGCGGCGGGGAGGTGGCCGTTCCC
CGGGATGGACATTGTGGGGGAGGAGAGAACAGTTCCAGTTCCAGAGGTGCGCCACTCGCT
TGGGGAAAGAATGAATATGGTACGGGTACCCGAAGCCCCTTGGGCCGGCCTGTTTGACCC
CCTTCGCCTCGCCCGCGCTCCCCCAAAAAACAGAGGCGAGGCGCGCGGGAAGAGACGGGC
AGCGGCGGCGGGAAGCAGGCCTCGACGGCGGCGCAGGTCAGCCTCCCCCTCCTCCTCCTC
TCATCTCTCCGCCCGCCCCCCGCCTTCCTCCATCTCTGCGGCGCTACCGCTACGCGTCGC
CCCGTTTGTTCCTCGGGGCGTCGGCCTCCATCTCGGATGCGGCTGGGCCACCACATCCCT
ACAGCAGCCCATGGCGGCCGCTGCCTGGTGGAACTCATGGCGACCGCCGTGTCACCCTCT
CACACACCACGGTCGGGACCCCAAGGCGGGGGCCGTCCTGCTCCCCTTGCCCCCGTGTCC
GGCACCCCGGCTGCTATTGTACAAGTGCTGTTATTTTTGTTTATGTTCTGCTGTTTGTAT
AAACGCTGTTGTTGTTGTGTTCTTGATGTATACTCATTCACAGATATATTCATATGTTGC
ATATAAGTTAGTTTTAATAGACATTACAAATGAGCAATTGCAGTTTGGACAATGGCCATC
CAAACAATATTCAGAATCGAGTATCTCATGTGAGTTCCAAGTGTCAATTCTTGAACATCC
AAACATCATACTTCAGGTTCAGTTTCAATATCAAATGTCCGGGAGATTTCATACTGGGAC
CAATTCGATTCCATGGCCCTCGATATCATCCAAACAGAGCATTAGAGTATAACCCCATAT
ATGACACCAAATTTGGTGAGTGAGTTGGATTTTCTCTCACCGGCGTAGTGCGGATTGTTC
ATGCAGGGTTGAGAACAAGCAACAGCGATCTGTCCCGCTTGGTGAAATGCCTTGTTACTA
CGACGTCAATGACATCCTCATGGAGGAGGAGGTAACCATGCCCGTGTTATCCTCTGCTTC
ATTTATGCTTGCACGGATGACATGAATACTCTGCTGTACTTGCAGCTTATTTCGGTTGTT
TTCCAAGTAACTGCAAATGGTGTTGGAATGCTAGATCCTGGCGCTGAGAGAAACACTGTG
AGCATCTTTCCAATGGCATTTGTGCATTTATGTTTTAACTGCTATGTTAACCCTGCTGCT
GGGCAACTGCTGCCAATTCTTCCTCTCATCTGTTTGTTTGGCAACTGCTGCCAATTCTTC
CTCTCATCTGTTTGTTCTTGAGCAAATTACTTCTCAAACACGCTGACTAGTTAGATGATG
TTTACCTGATGCATACTCTCTTGTTCATTTTAGTTTGCAAGATCGATATGGAACCCTAGA
TGCTTTCTTATTTTTCTGTGTGCCATATTTCTTAGTGAACAAGAACTGGGAGTTAGATGC
TTTGTTTTGTATCACCTTTTCTTGCTACTGTGGAAAAATCAAATTGCATATTTTATCTGG
TTCCAACAAAAAGATAAATGCTTATATTCTTTATGTTCAGGTTGAAAAGGGTGCTAAGGT
AGACCTTCCATTTTGGCTTGCACATGGGATGCTGTCTCTGGAGCAAGCGGTGTCAATAAA
TGTACCTCCTTGCTTCACTCAGAAGTAGGTTTCCTTGTAATCTGTTTTTGCATTTGTAGA
AATTCTTAAGAGGGGACACTTTGAAATATGCTGGATGCAGTAGTATGAAGTTATCGTTCT
CATTTCAACAAATTCACATGGAAGTTCCCCCTGTCAACTTAATGATGCTTTTCAGTAAAA
TACCCTTATGCAACTGAACAAAATACCCATTGGTTGAGTTTTGTGGCTTGTATTACGTAA
TTTGCATGCAGAACTCGGAAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGGTT
CGGTGCCCTTACTTTTATGAGCTAGGATGCAAGATTGTTCCTCTGTAAGTTCTGAACGAC
CTCAGTTACACATTTTATTTTATTTTATTTCCATTCTTTTCTATCTCATTACCTTTTTCT
ATGCAATCATAAATTCGCAAATTCTCATTCAAATATTTATGCACTATCTTTGTTAGAAAT
AGATTATCCACTCCATTGCTTTGCAGAACTAAGAACTTTGATGAGCCTTACAATAACCGG
GTAGCTGTGTAGTGTGTAGGCATACGTCACTACAATGCATTATCGTTTCTGCATATATTC
TGTTTTTGTAAAAATAAAATGCTTCTGTGTCCATGAGCAAGATAATTTCCCTCGTATATT
AAGTTAAAATAGGAGGAACTTCTGTAAGTTCAAGTAGCTGTAATCTTGGGGAGAAAATGC
AGTTAATACTATGAATTGTGTATAAGTAAGTTGACTGCTTGCAAACAAAAAGTAATCATA
GTTTTCTTTACTGAGGGCCCAGACTATAACATGCTTTAACCATACTCACAGTGCTATCTC
TTATCTTAATTTGACCAAACTATGTTCAAATTGGTGTTTAATAAAAATGGCTTCAACTGT
TCTAATTTGGTACTTGGCAGCAAGCTCCCCTTTGTCTACTCCAACGAATGATTTAATAAG
TCATAGTGAGACATGCCGTCTTGCTTTAGTTTTTTAGTGTCAAATTTTGATCCTAACAAG
ATTCAAATAAACTGCATCTTCTTGAAAATGTGATTGATTATTCTTCTTTCATTTTATTCC
AAAGAAGGTAGTATATGGTCGCTTGAAAATGATCAGATATATATGCCTGTATGATTCTGC
CATTGTTGCCATGACCAAACAATCATTGTAAGAAATTTAATCATATACCTGCAAATGACC
TCTGATGCCACCAGGTCAATTTGTGCTTTTGACGTGTGTTCACATATGGTAATATGAACA
GAATACACCATAACTAAATCTTCCTGAATAAATAAGTTATGATAATTTGAGGTATGTCCC
TTCTCAAAGGAATACTCAGGCTCTGTATTTTATGAGGACTAGAGCTGACTGCAATCATCG
TAATCTGTACAATTCAAGGACCTGACATGGATCTCAATGGTATTTTGCCTTCAATTTTAG
TGGGCAAATGGGCAATAACATAAGTAATCAAATGTTTAATAGCTGCCTGTAGCACATGTT
GTGAGCAATTGGGTGAACATGTAGAGGTACAACTTGATAATGAATTGGTTATATTCTGAG
TGATCATAATTGGGGTTTGAGTTTCTCCTATTCCCAGATTAGATGTGATTTATGTCAATC
ACAGTACCAACGTGTCATTCCATGGCATGCATTATGTGGCACGTGCTTTTGTGGTCAGTT
TAGAGGTCTGAATTTCCTTGTAAGCAGATCAAGAAAGGTTCTGAATTGCTCACTTTCTCT
ATGCGGGTGATAAAATTTGGCCAGAAGCATCTGGTTCCTGTCCACATTCAGTTTGAATAT
CCCCCACAGGATGGAGCCCTCACTGCTGTTGTAACAAATTTGTCAGCTCTGTGAAATATT
ATTATGTGTTGCCTTTGTAGTTTGTACACTGAAGTTAGGGATCCCTTGAGGTTATTGTCT
AGTGATGTCTGGGCTTCATTACTCCCTCCATTTAGAATAAATTTCATTGTAGCATTCAGA
TTTGCCCCTAAATGCCTATTACTTCCTCTGTCCCAAAATAAGTGTTTTAAGCTTAGTACA
ACTTTGTTCTAAAGCCAGTACAAAGTTAAGACACTTATTTTGAGACGGGAGGGAGTATTA
TTTTATTATTAGATAACTGTACACCATGTTTTCCCTTGCATCCATTTATTTTGGCTATTT
CCAGTGCCATATATTAGTATGGACTAGACTATCTGACATGAAAGATGGTGTAGTAGAGTG
GGAGTTTGATCTTAGCTGGTACTATGATTATTTGTCCTTTCTTACATGGTAATGTAGTAT
TTTTATCCCACCTTCCTTGGGCATTTGATCTTTCGCCCTCTAACAGCCTGCACCCACACT
TGATTACCAAAGCACTCTCTTACAGGCTGGGCCCACACTCAGCAGCGAACTAGTAGTAGG
ACTGAAGAACATGTCTTCATATCAGATTTCCGAATTCAGAATTCAGAATTCAGAACAAAC
CACATCCAATGTGGACTAGATTAAGAATTCAGAATTCACGACACGGTTCAATAGACATTT
AATGCTGCTAGCCTGACAAGACAAGTGGAAGAGGTCCAGCTGAGAGCCAAGTGTTGACTC
GTAGGCTCGTCGAGTCTCTTAATCATTTGGATGAGATGTGATGCGTGCGTACAGGATGTA
CGAACAGGGGTGAATGTCTACTTTCTCTCTAACAACAAGTATTGTGGTACAGAGGGAGTA
GATGCTTAACTGAAATATTGGCACGCATAGTTGCTGTACTAGGGCATTTCAGATAACCGG
ATGACAACTAAAAATTGAAGCTGTATCACAGACTGATTTTTTTCACTTGAGTTACTAATT
TCTTACTACAATGGCCAGACTAAATTACTTTCCTTGCTGATTTATTAAGTTTGCATGGCT
GCATCGACAGGGTGGGTGACAAGAGCATTGGCCAGTTCTTGCGCTACGCGTTCACCAGCA
GGTACAAGGAGATACTAAGCAAGGCACACAGCTCTTCGACGATGACAGTGCCCAAGTTCG
CAACACGCCTTACAAAAGAAGAGGCTCAAGGTACGGACACATTTCCTCTTCACTTACTCA
TTCCCCTCTACCATATCAACTGCTCTAACTCGGGCTAACTTTCTTTCTTTTCGCCGTGAA
GTGTTCGAATCTGCCAGGGAATCGATGTCCTCCTTCAGGAAGTGGCGCGTCGGGGGCGCG
AGGCTGCAGAAGGCGTCCATCCTTGGAAGGAAGAGGAAGACAAAACTGCCTGACGGGCCT
TCGACGAGCTGAACTGTCTCTACTGTGTAGTGGAGTCGGAGTGTGCCTGGGCAGGAGAGG
GCCGATGTATGCGCACTGATCGATCTGGTACTGTAACTGCAAACAAGGAATTCAGTCATC
ATGTATTTCAGTCTTGTGCACCTGATGTGTCTGTCGTTTGGCACTTGGACGTCAACTCTT
GTGTTTAGATGCTTGTATTGAGTGCGAGTCTTGAGGAGGCTTTCCTTTCTACTAGTAGCA
ATGCAAAATATGCGCTCATGTTTCTGTTGATGCGACCAAATGGAATCATCCGAAGAGCAG
AATAAGTTGCGGCATCTCTTACAATAACCGGTTGTGCCTTCTCTGCAGATCAACTTTCTG
TGTAGATAAGAAAGAGGATCATAACTGTGCTGATGACGCGTGTGGCGAGCGCGACCGCTC
GGGCGACGCGTGTGGCGATAGTCCACCTACCGCCATTAATGGCATTCAATTTCCACCGCT
TCCCGAGCCGCTCCCCCACCCCATTCCCTCGTCTCCGTGCGGCGAGTGCGTCTCCGCGGT
GAGTGCGTCGCGTCGGGAGAACCCACCAGTCCCCATCCTACGCCTCTCCTCTCCCGCTAG
CTCCGCTCAGATCTGATGGCGAGCGAGAGACGCAGGTTTCGCGTGCGGTGACTCCGCTCG
GCACTGGTGTCGCCACCGAGGGCACCCGCAGCCTCTTCGCCGATGACGCTGTTGTCGGCG
GCGGAGCTTCACTCCCCAGAGGCCTGCGCCGAGATGCTCCGTGTGGTTCGAGGGAGATTT
CCGGACCGTGCGACCTGGCCAAGGATCATGGTGGAAGTAATCCGCGCGGCGTCCTTTGCG
GAGAGAGCGCGCTTCAGCGGCGACGAAGGAGGTATGGACTACGAGCTTGTGTACTGGGCG
ATGCGGGAGGCGGAGTCCTGTGATCCAGCGGTGGCGGCGAAGTGGAGCGGATTCAAGTCG
GTGGTTCCATTCCTGCGCAACATCAACCCTCCTTCGGTGATGGAACTATCCCAGATCCCT
CCCGAGGAGCTGCCGCCGGGGATCGACCTTCCTCGCGCTCCTTGATCCCCCGGGCTCCCG
GCAGGCGTACCTCGCGGCGGGATTTCGCGCGGCGAGGTCATCAGGCGGGGAGAGGATTCC
ATGGCTACGAACCGCCACCATGGCTGGGGGATCGAGGTGAAGTACATCATCTTCATCCTC
AGGTACGCACTCGCATCTCTGCTGTTAATCGCTCTCGTTTCTATGCCGGTTTTTTAGATG
GGTTTACTGGTGCTGTAGATATTAGTTCTACAGTTGAGAGCGATTATTACCTTTTGGTTA
GTAGAGAGTGCAGTAACAAGAGATTGGGCCCCGTGTTATCTGAAGTTGGTAATGGAGTTT
CTGCTCCTTGTCGTATGATGCATCAGGTAGATGCGGAAAAGTAGACGACCTTCTGGTCTG
CAGTAACAATAATAGGAATCATATTGAGCTGACTAGTAGCATTGGAGATGGAATTAATCC
ATTAGGTCAATCCATTAGTCAGGATTCACTTGATGAAGTTGCTTTAAAAATGAACAAAGT
GGCAGAAGGTACTACTGGGAACAATTCAGGTACTAATATCATGGATATAGTTTCAGAGGG
ATGCATTTTTGCTGATTCAGATATGCAAGGGTTTCCCCTTAGTACTATGAGCTCTTCTCA
GGTTAAGAACATAATAGATATAAGGCAAGTGTTTCGAAAATCTATTTTGGACCTTCCCCA
ATTCCTCCCCCGCTAATTCGTGGACATGTGGTTAGGGGGAAAGCACAGTTTAAAAAACCG
TCTCCTCTGTTGGGAAACAGATCTGAGGAGGTGGCTGAAGAGTTTTTTGGTCAGTTATGG
GTTGTCCCTTCCCCCAACCGCCACCACTCCCATTTAGTCCCTCCTCCCCTCCCTCAAACC
CTAATATTGCTCTACCACCCCTCTTCTGGATCAGGAAGGATCTCTTCCGATCCAAGAATT
TCACCAGAGATGACTGCTTCCCTGTGAAGTTCCCCAACCAGTTCGATCCTACCCCCACCT
CTTTTCGTCTCTCTGTGGAAGGGATCGGTCCTGGATCCTCATCTTTTGCTGAGATAGTCA
AGGGGGCGATGGAGAAGGGCCGGCCACAGCAGCAGCGACCTCCCCACCGTCAACCTCCCA
AGAAGACTGTCCCTGCCCAAGGAGGGCAGGCTCAACCTGTTCAACTTCCCCCCTGTTGTT
GTGAAACCTCAAACCGCAAACAAAGGAGGGGCAGGGGGATCTGGAAAACAAACTAATGGA
GCCCAACCTGCTGCAACTCTGGTGCCTGTCATCCCCACCCCCTGCTGTCCAAGCTTTGGA
TCCAAGGTACAAGGACATGACCTGTTTTAATTGTAGCTGGCCTGGGCACTATGTTGGCAA
CTGTATTGAGCCCAAGAAGTGTTTCATCTGTGCTGGGGTACATAATGTGAACAACTGTGC
AGCTTGGGCTCGTCAACACCCTACTGCAACTTACTTTGGAAGTGCTGCAGCTGGGCTAGG
TTTTTATCACATTGACGTCCCCATCTCTACTGAATCCAGCTG