Map Locations of contig_42567 (6502 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_42567

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58333 5 1792 bp AK366818 Available Available None





CDS Structure of MLOC_58333






Contig Sequence (6502 bp)

>contig_42567 6502 assembly3_WGSMorex_rbca.fasta
AGGAACGGAGGGAGTACATACAAAGCAAAATGAATGNNNNNNNNNNNTAAAGTATGTCTA
TATACATCAGTATGTAGTTCGTAGTAAAATCTCTAAAAAGACTTATATTTAGGAACGGAA
GGAGTACCAACGTAGTAGCTGCTAGATTGGAGTAGGTATCTCTTACTTCTGTGGTGTAGA
GTAGGTCTTCTCTTAGTTTTGGTTTTGGCTTTGTTTGTTTTCAGTTTGGTCATCCCCACA
GTTGGTAGTTTGTACTTTACGCTCGCCATTCTTTTTCTAATACAATATGAGTTCAAGAAA
AATAGCTAGGTTAGAAAAGTAATCATGTGACTAGAATGGTTGAAGAACTCGGTGCTATTG
CTCATAGAACTAGACCTGGCTCGCTATCTACAATCCCTGAAAAGGGTATATTGTAGCCAC
AAATAAATCAGCCGCCGGATCTTGCATTGACTATAGAAGAGTGGACGAACTACTCTCCAA
TGCACTGTTAACTAAGTGAACACACTACAACATCTTGCACTCTAGCCATGCTAAACAGCA
TTGATATTTTCCTCTAAGTTGCTCTTAATGAACTTACTCAATCATCTATCTACAGATCTC
TTCCATCCACACAGCTTGTATTTTTATGTACATCTGATAGTTACTCAGTTTCCTTCAAGG
TACATGTAATTGATTTTAATTTTACATCACATTAATAGAACCTGGAAAAGAACTGTTTGA
CCTGCTCTAATCATCTGGATGTCCTTACCCTCTGAAGAAAAAAACATGATGTACATCATT
TCTTTTTGATTATCAACATTGTAGGGCAAATTGTGAGCTAACACTTGCATAGTAAATTCC
TATTCACAAAGGAACCAGGCGCACTAATAGCACATTTAGTGTTATAAGACTGCTAATATA
TTTTCATTAAAGACTGAACTAACCAAAAGGTTGTGCTCTGTCAAACTAACCACACAACAT
CCATATTCAATAAACTGTCAATAATTGTGCTGCATACCCACAGAACAGTTCCATCACCGC
CGAGAGTTACAATGAGGTCAACCTTCGTGTGTAATGTCTTCATTTCCTGATCTATCAGTT
ATTTCTGATTAGTTGAGCACTAAAAGGAAAAGGTTACATGTGACTATAAGTAGTACAATC
AGTGATATCTTAAAACCATCTATAAGAAAATACAGAAGAACTTTACTGGATATAATTTAT
CAATGGAGAAGGAAATGTTTCATAAAAGATGACCCTCGAGCATTAACAGGAAGTCAGTAA
CAATTATAGCAAATATAACAACTATTAAGACTTAAGAGCAGTTTGTTCTTGGTAGTCTTA
GTAGAGGAAACGGATTATCTCACACAAAAAAAAAAATCAGTAAACAAGTAAAGAATAACT
GCTCGAGGTAACTAGACCCCCGTACCGCTGTCACTTGCAAAAATCACGAGAGACATTTAG
ATGCTTGAGTGTTCAACAAGGAAAATGTACAGGAGTACTCCCAAAAGAAATCATGGTTGG
AGCACAAATTCAGAATATTACTTGAAAATCCACTTGCATGCTCTGGAACTTTGAGGTGCA
CAAGTCATTTATGTAATTGCTAAATAACAACATAAGATTTTTCATTCTTATAATCAACAG
CCATAACAACCATTCACATACCAAATAAGATTTTAAAAATAAAACACATCCAGGCATGAA
AATTACAGCAAATATCCCAATATTCCACAATTACAGTCGGAAGCAATATGGAGAGATGAA
ATATACAATCAAAATCACTTACCATTATCCCATGTCTGAATAAAGTTGAAGTAAGAATCT
TCAATCAGTAATTCCTTGCTAACTCGTGGCTCTACAAAGATGTTTATGTTATTATGTTCT
TTAAGCCATCTGCAAGAAATACACAGAACATTTAGCACATGTGGGCAAATGTATTTGAAG
ATACAGTTCGACAAAACATTAAGCAGGAGAGAATAAGTTCTAACAAAATATACTGTTGCG
TGCAGTACACCAGATAATTGACATTAGTAAAATTCTCTCAGGTAGGCAGCAAAGAAACAT
ACCTAACCATTTCGGAACAGAGAGCATGCACGGAGTTGGAATTAGGTTTAGTCACAAAAA
GAACTGTTTGTGGAGGGGAATCCCATTTCAGAAAAATCTGCAAGGACAGTATTTGTTGAC
ATGAAAAAAGATGCAGCAGCAATGAGATTATCTCGAGTTCTCAAACAATCATTTCAGACG
AGTGGAAACAAATAAGATATCTGTTCAAAATGGACCAAGCTGAGGATAAAAGGGTTACCT
GTTTATTGCTGCGTTCTGCTGTTGTTATATCCCCTTTTTCGAAGGACACAAAATCATGCT
TGTGCTGACCATTCTTATCACCATTGCTACCCCACGAAAGTCTAAACGGTACCTGCAAAT
ATAAGGAAAAGGTGCTTTTAGAAAGAAAAAAAGGACAAGTCGAATTGACTGGAAAAAGAC
TTTCTTCCAACTGTGTCAAAACATGAAAAGCGTTCCTATTATTTGTGTATCACAAGCAAA
ATGTCATAGGCAACTACTTGTGCTTGTCAGGGAGATTTTTCACTAATATATATAGCAAAT
CAGAAATAAATAAAATATAATTCTGCGAGTTCAATGGTGCATATTTAATGCGCAAAATGT
TCTTTTCACATATCATTTTGTATTGGCTTCCTTTCGTTAATCTGGGTGACAGGCTGCAAG
TATTTAGAGGTAGGCCAACAGCATCAGATGAAGAACAGCTGGATATCAGTTGATTTTAGC
ACAAACCACATTACGAAGAAAACACATTAGTATGGCCATGTAAATCAACAGCTGCAAACA
GATGTATGTGAGGGTATCCTTGCCCAAATCCCAAAGGATACCTTTCTTCCAATAATCCTG
TCATCTGATTTACGGTTAGGTCCAGGACACTGATCCTGGAGAATTTGACGTGAGCAGATC
CCATGGTTTCCGCAGCAGCCTGTTTCATCAGCCGAGGAAGTCTCCAGTGTCAGTTTACTA
GCCAAATGCTCTAGCTTATCCTTGACACAGTTGCTGCAGCCTGCACATGTTAGTTTAGCG
TGAATTTTCCTGACAAAATCAGGTGCATGATAAGATAAAGTAGTCAGTTCATTAACTTGC
TGACAACATTCCTTATGTATCTGGAATCATGTTATTTGTGCAGTTTTCATATTGATTAAA
CTATGGTTACGTGTTTTTCTTAGAAAGTTCATTAATATTCTGCACCTGGAAGGTACAACT
TCAGTACAATGGGTCCTTCTTTCGTTGACTAATTTGAACTGCTAAGACATTGGAGGCTGA
TCTAATACTAATATATCATTATTCAAAATAATAACGATAATAATATATCATGTACTGAAA
TACGACAAAAGATGCTTTGCAGTGTTATTTGATAGCTACCATGAACAACTAGTAAAATAC
AAAGTCTAACTGTGTACCTTTAATTACACTGTGCTGCATGTGTGCCTTGACTGCCTTCTC
TGACTCATACTTGCGCTTCCACTCAGCCGCCTCTGCTTGAGCAGCAGCTTTCCCTTCCGC
AACTTGTCGCAGTGCTTTTGCAACAGCTTCAAGTGCAAAGTATATGTACATTAAACAGAT
GTGTGCAGACACACATAAGTTTTAGACAGTAGAGTGACAGACTTCAGATGATGTCAAGTA
TTTGTATTATTACTTCTCATGGCCTCTGCAAACTCATGAAGGTGCGCGTCAGTTGACTCG
ATAGGAGGAAGAAATGCATAGGCCGCCTCCTCTGATTTCTTAGAACTAACTGTGGTGAGA
GACCCATTCTCAGCTTGATGCGAGGCAGCTACACTAAGGTTTATTCTCTCATGACAGGCC
TGTAATAGAATAAACCTCATCAAGACAACATGAAATCTGACAAGGATAACAAAGTTAGAA
AGCTTTCCAGCATCAAACATACCACTCAAAGGAACAGATGTAGTACAGGCCAAGTACTGC
TGGTAAACATTTTATAAACTCTAGAGTATGTCATTAAAGTTTAAACCAAGTTCATGCATT
AACAACAGCGATAGGCTGAACAAAACGAAAACACGGGTTGTTTCAATGACTTCAAAATTT
TAGTTTGCGGCATATACTCAGGCATGGTTTGTGGAAATCCTAGTATAATCAGATATGTAT
TAGAAAATTCAGAAGATTTTAAGCAAACTGTGAGAGCATGTTTAGCTGTGCATCTAGCAG
TAGTTGTGAAGCTGGTAGGGCACCAAACTGTATCGCCTCTTCACAACATATAACATCCAA
GGTTTTCAGTACTATTTTGGCCTCAAAATCCTCCCGGTATTGAATCAGTCACTATGTGAC
AAACAAGTCAATGCCCAACAGGACAGCACTGCGTGTTTCTTCTACCACGTGTCAAAGACG
AATATTCTATGTGTTTTTGCCAACCCACAGAAAAAGGAAGACATAACTTATAATGATATA
ATATGTTCAAATATATCACAAAGCTGGAACACTTGGGAAAACAAGTGCAAGTTGATGGAC
AGCAACTGAGGCGAGATATATGATCTCAAAGAGATGGCCACTAGAAGTTAAGATTAGAAA
CCGTATTGCAACTTTACAAGAATAGAGTATTTATATATTTATATTATTACTGTGATCAGT
CAATGCTTTTGGGCAGCCTAATAATACTTAAAATAGTAGGGATGATCTGAACTGAGTCGC
ACACAGTTGATGTTTAATCATCCCCTTGAGGGAAGTCCAAGACTATAGGATCAGCAACAC
GGCATGGTACTAGGGGCGTTTCATGGGCGCTCCCGAACCAAATCCTCCGCAATGCGCAAA
TCGAACAGAAATACACACCAAAATTCAGCCGCGCCCTGCCCCCCCTCCGGCCTTCCACAG
TGGCCCAAAACGGCGAAGGCCAAAATCCCGAGCACCATTGGCGTCGAGATCGCACGAATC
GCCCGCATTAGCCATAAGGATCCAAAGCAGCTGAAGCCCCCGCCCCTCGACTGTTCCCTA
AAAACTTTCGGGTGATCCAACGGCAGAAATCTACACCCTAAAAGAGCGGTGAATTCCGAG
GAAATCTCATGAGGCGTGCATGTACCTTGAGTGCGGCCTCGTCCGCGGACATGGCTGCGC
GATCCGACTGCTTCCCGGCGTTCCCCTCTTCGCCGATAGGGCCGTTCAGGTGGGGAGATG
AGCTGTGGAGTTTCCGCCTGCCCTCCGTGTTCGGTTATTAATGGCTTGTGCGAGGCCCGA
GCGCGGTGAGCTGTGACGGCTGGAAAGGGCGAAGGCCTGACGGGTGGGGCCGGAGCTTCA
GTGGGACCATGGAGTCTGTGCGTGGCACGATTCTGGTGGGCCCTTCGACCGCGGCACCGA
CGGCAGTGACTACCTACTACAACGAGAACTGGTAGGTACACACCGTGCACGGGCCTCCTA
CTTCCGCCTCCTGTTACACGAACACTCCAAGCCCACGAGCGGACTGAGACCCAGTGACAG
CAACTTTAACCATTTAATCTACATTCAAAACATAAATCTAATCTTCATCCAAAACATATC
TAATAGTCTATATAAAACAGCTATTTTTTTAAATATTACTTTTTTATTCTTTTTGAAAAA
TATTATGCTATTTTGAAAATTTTCAAAAATATAGTGGCCTCGGTCCAGGTGTGGCCGATT
GAATCATGTTGGCCCAGGTGAGGTCGATTGGATCATGTCTGCGCTGGTGTGGTCGAATAG
TGACTACTCGGCCACGTGAAGGCCGACTATTGGCCCGGCCACGTCGCCCCTTATCCTCTC
GGCCTGGAGGCTGACCAATCGTCCTCGGCCTGGCCGATAGACCTCTCGGCTGTGGCGTGG
TCGATATGTGGCCAACCGGCCAGCCAATGGCCCGCTCGCACCCTCTCCTTCCTACTCCTC
CCATTCTTCCTCCTCCTTATCTGCTTCTTTCTCTCCTTCTCCTCTTTCCTTCTCTCTTCA
CCCAAAAAATCTCTCATCTCTACACTTAATCGTAGTCGTTTTTCCCATATTTCTCATCAT
AGTTCTATTGTATAGGGTTAGGACAGCCAAACCATCCGTCTCACTCGCGATGGGGTAGTT
CGTGGTGGTTGTTTTCAACCTTTTTTGGTGATGGTGGTTGAGGTTGAGGTGGAGGTGGTT
CTTGTGGTGCAGTTGGAGGTGGTGGTGGTGGTTGCTGCGTTCGTCATTTTTCTCGGTGTT
CGTCGAACGTCGTTCGTCATTTCTGCGCACGCTTCAAGGGTAAAATATTTTTAGGTTTGT
TAGTTAAGTAGTTTAAATAATTTGTTAGGTCAGCAGAGAGGAGGAGGAGACTACAACAAA
AATAGAAATATAAATATATTCAAATCTATCAATTATTTAACACCGAGAACACAAAAATAG
GAATATAAATATCAAGCTAACAATAATATCTACAACGTGTTTATTCTTGATGACTGAAGC
ATACCGGAGGACTGATGTACGGTGAAGGAGCAACGGATGGATCTTCCTCATAATTAGCGC
ACATGAAAAACTTCATGCCCAA