Map Locations of contig_42550 (7542 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42550

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58313 2 1001 bp AK250954.1 Not available Available None
MLOC_58314 7 2134 bp AK357614 Available Available None





CDS Structure of MLOC_58313






CDS Structure of MLOC_58314






Contig Sequence (7542 bp)

>contig_42550 7542 assembly3_WGSMorex_rbca.fasta
CTCAACATGCGCATCTCTGCTACACCTAGTTGTTGGACATGTCGCCTTTTAGTAGGCCAA
CATTTAGCGTCATACTCAATGACCCTTTCCATTGTTTCATTGTATGGGTCATCAGCTTAA
TTGCACGGTAATTAATACAACTTTGAACATGCATGCACACAAGCAGGTATATCTTATTAG
AGGTGACAATTGAACATAGACCAATCGCAGGAACACTTTGAAGGCATACATGTTTTAACT
TCTAGTTGTGAAAAACAAAGGAAGCAATACAAAGTTAAAGTGATGTATCAATAGACTAGA
TGTCACATGTCCTTAAGAAATACATACCTGAAGATAACTATGGTTCTGCAAATCAACAAA
TATTTCACCACAAGAATCCTTGCACTCTACAGAGTAAAAGGCAATACGCTTGCTTCTCTT
CCGGCAGTTGTCATTAATAAACAACTAAAACATAACACAGATGCAAAAAACAGTGAGGAT
AAGAAACTGAAGGTAGTGAAAATATTACTTCAGAGAAGGATCTGCACCTTTGTTTTAAGA
GATGTGCAGCTAACTACAATAATGTCAAAGCTGTCAATGAATCCTTCATCAATTACTGAT
GGATCACCTGGAGGAAACAAGATGATAGTCATAACTTTTCCAATCAATACTGTAAAAAAG
AATGTCAAATTTTATAGCCATCAACGAATGGTTGAAAATTTCTATTACAGAACCAATATT
AGTAAAACAGACATAACAACTGCTTGTTCCTATCACTAAATGATCTTTCTTGTAAGAACT
TTTTCAACTACAGCAGCATTATCAGTAAACACAATAATTGAAGACTATTTCAAGAATACA
AGACATGATCACTTTGTATAATATATTTTTCTTAATCTAATAACCAAACTAATTAAAAAG
AAGTGCATCAAACTATACAGCACACCTTTTGCAACAGCAACTCGGACCATTGGATTAAAA
TCTTTCAAGGACTCACAGCAAGCCTCAGCTCGTGAGCAACCACCATGCATACTCTCATCA
TGAGGAATTAGGAAGTTTGCACTGAGATCATCCTCAGTGACTATGTGATCATCCATCAAG
GATAAACTGCCAACTCCTGCTAGAACAATATTCTTGCAGAACTGCAGAGTACGAGAGAAA
TCAACTTTAGTGTGTGTGGGTACTTTCAGTAAATTAACTAAATTGTAAATGACATATGAG
AATTTATTTTATTGAAATTCAATTAATGTTGAGAAGAATTGGGGATCTCTGTTTGAAAAA
TAAGTGTGCATTGACAAGATGGAACATGAGATGACAGGGGTGAAAAGCAAATTTAAGAAA
ATGAACAATAAATTCAAATTAAATTCCTTTTATCTAGCAAAGAAAAAGATTAAACGCTTA
CAAAAAAAAGGTGGCAGTCTAGCACATAGACAGTTTAAATAAAGAAACTAAAAATGACTG
AGTTGTTACTTATTCATTTGAGCGATGCAAACACAGAACATCACTCCAAATACTAGTTAT
AACACCTTGAACCCTAAATTTTTAGTGCTATCTTTTCAAATAACCAATATGAGACCATCA
ATGTTTTTTAAAGGCAAATTACCTGCGAAGCATAATGATAGAAGACAACTTTAGTTACCC
ACCTCAATTGTAGTACCATTCACGCCACACACAAGCACGTGCGCTTTACTTAGCCTGTTC
CAAGCAGCACATATACAATAGTAAGTTAAAACAATGCATGCGCCCAAACAGTGTTACAGA
AGGTGACAAAAATCAGTAAAGGACAAATATTACAAATAAACTAAATAGAGCGCGAACATT
GGCACAAAAAAAGAAAACACAAGTCCAAAAATTTCTACCGAAAGCATAAAACCAGGTTCA
CATATCATAGTCATAGCAGAAGGTTAAGTTTGATACAATGCAAAAGGTTGAATCTCGGTT
TGAAAACCGCATAAGATCAAACAAGGTTTTCTCGACACAAAAACCCAACAGAAGTGCAAA
ATGATGCTGTAAAAGAAAGAGAGGATAAAAATAGCAGGAGAAGAGCTGGGTTCTTGGGAG
GGGAGGGGCGCACCTCTTCTGAGCATCAACGCCCCAGACACGGATCTGGCGGTCATAGAG
AGCTGTCTCCTGTGCTGTCAACTCCTCCTCTGTGCCTCCGCCGCCACCCATCGCACGGAA
CACCTGGATCCTGAGCCTGAGACGCGAATCCAGTTAGCAGCCAAAGAAGGGGGAAAGTCG
CAAGGGTTTTCGAGCTATCAGAGAAAGTGAGTTTTTTTTCTCTCTATCTCTCTTGCCCAG
AAGCATATCCTACAGGTTCACGGGCAGCCGTCCATCCGCCCTGGATGAAGGGACAAAATT
TCGACCAATGCAATTTAGTACCCATACTACTAGCAGAAGATGATCCAAGTCATGCTTTGG
TTTGGGAACATCAAATCAAACTAACAGTAAGGTTCACCATCATCGTCTAAAAAGGGAATC
GGGCATATACGTTTGACAGTGGAGTTAGTAATCCGTCCACATACCTACGGAAGAAGGATA
TCAGATAGGTCACATACTTGGACAGATCCATCACGCAATAACAAGCGAAACGAAACGAAA
CGAGAGAGAGGGAGAAAGAGCAGTGGCTCCGGCCTCTATCTATACATATGCTGCTCCCCG
TTGGTGTGCAACAAATTACTCCTGGATCACACCAAGAGACATGCTAGGAGCTGAGCTAGT
TAAAGCGCGCCCCTTGATGTTCCCCTGGGCAGTAAATTTTGTTGCGGGTGCTCCTGGAAA
TCGAAAAGGCAGGCTGACAAACAGGCTTCTCAGGTTTCCCCTTGCACTAAAGCCTAGCCT
CGAGGTGGGTTTGGCCCTCCTTCCGGTGTAAGCGGCCATTGCCTGCCTACTATGTATGCT
GGTGACGTGGCGCTGGCCAGCGTGCGGGCCGCGGTGCGAGCTCCGGAAGGGGTTAGAGAG
GAGATGGAGAACGGAACCTGGTGGCCGGCTCCGCTGCTTGCCTGCCTGCCTGCCGCCGGC
TCCGTTCGTCGCCGCCGGCTCGCCGCGCTAGATAGGAGGGGATTGGGGGACGAAGCGAGC
GAGGTTTGGTTCCGGGGGAAGGGAACGGAACGAAACGAGTGTGCCTGTGGGCTGTGGGCT
CAGTTGTGGGCTTGTGGGCCGCTAGATTTATCAAAGGCCTGTGTATCTGCCATAGAACAG
CAAGCATCTTCCTTCTTGAAACACCCCTCAAAAATAAAAATAAAAAATCTTCCTTCTTGA
AACATGCCTCAAAAAGATATATCTTCCTTCTTGAAACTGATTTGGCCGATGAACGACAGC
AGATCAAGGGGCCGAAAGGGGACTCCAGATACATTTCAAATATTGCTTATTTCATTCGTT
CCCTCAAAAAGAAACATATTGCTTATTTCAAATTTCAGATTCGGGGTGATTTTACTGCCG
CGACACTCTTTTATGAAGATGCACTGCTTCTGTCATCTACTCCCTCCGTCCCATAATATA
AGAGCGTTTCCGTCTCATAATATAAAAGCGTTTTTTAGTATAAAAAACACTCTCTTATAT
TATGGGACGGAGGGAGTACCTCTGGAAAAATCATTACTACTGTATTATATTTTGTCCAGT
AACCTGCTGGTATAAATTTCCAGAAGATCTTTCAAGTCAAGGAGACCATATAACCTCAGT
GGCTAGACAGAAGGAAGATGATACAATACAAGGTCGTAGTTGGCAACTGTTTTCATCTAT
GCTGACAGGTTACAAATGTTGCATCTTTCGCATCACAAGATGTCCCTCTAAGAAACTTTG
GGCACAGTGTTTTTGTAATACTGGCCGCTACATCAAAGACTAGAAGTACAGTGTGTCAAA
GTGCATAGTTTCAGATTTAGAGAAGACCTCTCTGTTGTCGGTATCAGGGTTTTTGTAATA
CTGGCCGCTACATCAAAGGATCAAAATATTCTGCGGGGAAGCTTCACATTGCCTTGCCCG
ATTCTTTACTGTCCGCCTTGTCCTTTTTATCGACATAGGGGTACTCGGCAGGCGAACTCC
ATAGGCCGAACAAGATGACGAGGTGGACGAAGAACAGAAGTAGTGACGAATAGGCGGTAG
AAGGATAAACGTTCCAGCAGAGCTCCACGGCAACAAACAAAATGATCCTGGAACAATGAA
GGATATGACATGACAGAAGAAACCAAGGATGAGGATTACACATATAATCTTCAAAAGCAA
TGAACAAAAGAACTTCCACTGACATTTAACATAACTATGAGTGATTTTTTCAAACAGCTA
CCGGCGGAAAAAGGTGGAAAAAGGATGTAAACATGCTGGTGCATGATTATTATATAAAAA
TTAAGGTGGAAAAAGGATGTAAACATGCTGGTGCCTCACGGAACAGAAGCAATCTATAAA
CATGACCACGGGTGATTTGTTCAAGCAGTTACTTGTTCGCTCATTTGAGGTGGAAATAGG
ATTTAGATGAGTGTGTTGCCTTACCTTACTACTGTTGGAAACTGTGTTCTCCACAATAGA
AAAGGCAATGAATAGAAGTACCTGCAAACAAAAGAGTGAACTTCATTTCCAGCATTTGTA
CGTAACAGGCATGGTAGTTGTGGTGGTGGCGGGGTACTTACCAAGAATAAAACTGATAAT
GTAATGATCGGGCACACACAATGCCAATGAAGTTTCCAACAAACATCACAGTCACAATAT
CTGGATTCAAGTTGTTATTATCTCGTTAGTCTCGTAAAAAAAAGTTCCAAATGCTGTGAA
TACAAAATTCAAGCTTCAGAGTCAACATACGTTCTTTACTGAGAATGGACTGTCTGGGCT
TGCACGAAATAAGCTGCTGAATTGATGCGGCATCTCTAAATCTGGAATGCATAAAATGGA
ACAAACCACCTTCATGCCTGTGAAGAAGTGCAAGAATGGTAAGTATCGGGAAGAACCATA
CAGTTTAGGGAACAACTATGGTGAAAGTTTTACATGCATATCTTCACCACAATTCTAGCA
TGTAACAACTGACTAGACCCAATATAAGTATACTCACTTAAACCACTTGTAGTGTGCAAA
TACCATAAGAGTAGTGAGGTGAAAAATCAATAGCCCAATAGCAAGCTCTTTCGATACAAA
ATACTTCTCAGGAACAAACTTAAAGTTGACAGACCTGAAAAGCATAAAACAGGTAAGATT
GTATCACAGCTGCATATATGCAATAATAAATCTATGAAGCGACAGCTGGGGACGTGATAT
AATGGGTATAATTGCAGTGCTGAAATGCTTTGAAATTCCAGAAGTATTGTATAAGCACCA
GAAATGGATGAACACACGCCCAAGATTGAAAGCTCTTGAGATGTACTCAACAGGATGTGA
CAACAAGAATGGGATACCCAACAAAATCTACAGAATAGAAATGCAAAGCGTTAGAGACAA
AATGAGATACTTCTTATCCATCTGGCCATCTAGCCACTTCCCAAGCATTATAGAGCACAG
CACTACAGTAAGTTCATGTTTTTCTGAGGCCAATTTTTATATCAATAATCACTGGCTTTT
CCATGTAAAATGGCAATATCTCGATACATAGTCTCATATACTAGAACTGCTGCATAATGA
ATTCACATTTAGTAGAAAATTATAAAAAACCATACTGTCCAAATGAGGGTGAATTTAACC
CCTTACCATGCACATTGGCAGACGTCAGTACAACTTAAAAAAAAGGAAGACCTGGAAATA
TTTATTATTAGCCCTACATAGCATTTGTGAAATATGAATAACTCATGTTGGCATGCTAGA
AGGAACTATCAAGTATCAAGCATAACGTAGCCTAAATGTGGTACACATGGTGATCAGAAA
ACCATTCAAGAAAACTTGTAACAATGAAACTAAGATGAAAAGTATGAATAAAGTAAAGCA
CAACACACCTGTACTCCTGCAGCTCCCAACAAAGCAAGAAAAACTCCTTTGATACTCATG
GCCTTTAGTGAGAAGTTGGTAAGATAAAAGTTTGTACCATAAGATGTAAGGAACAGAGCA
TGGTCATATAATACTATACCTTCAACATTAGTAGAAACAAAGATGGAGCAAAAAGGAGCA
CGTTCATCTTAACTGAAACAGCTCCACTGCAGCAAAAGTGGTTGCAACTAAATGTGAGCA
AAAAGTGTGTACTAATGGTATGGTATGTTAGTACTCGCTCAGTAAAGAAATATAAGAGCG
TTTAGATTACTAAAGTGGTGATCTAAACGCCCTTATAGTGATCTAAACGCTCTTATATTT
CTTTACAGAGGGAGTACTTTGTAAGAAACAAGCATGGATGAAACGATAAATCAATGTCAT
ATTCACACAGTTTGTAATCACCTGAAAATAATTAGGCCGAGGTACCACTTGTGATAGACA
ATCAAGACCATGGCAGCATGGAGCAATGTCATAGCAACGCAATCGTTGAAAAGACGGAGC
ACAAAGATGGAGTGAACTCGCTTTGATAAGCAAAGCAAACCTAAAGCCCACCAAGGAAGC
TGGTTGTCATGATCAAGAAACAGGGAGGCATCAGAAACAACTTTAGGTAAACAGCTCTAT
GAAGTGCTGCCCTTGGAAGCTTGGTCGCACAGATTTGTTACAGAAATTCTTACAGGTAAA
AAAACAGTTGAACAGTTTGGGTGTCCATTGTAAAATTGTACTCCCTCCATTCGGAAATAA
GTGACGCTGTTTTAGTTCAAATTTAAACCGATACAGCGTCATTTATTTCCGAACGGAGAT
AATTTACAGTTATCCTTGTTGAACTAAGCTTTAGACTGTTCTGAGTTCAGAACTGTGAAA
CTAACACGGAATTATGTGAAACACATCATCAATTTCACATTCATACCACTTCAGTCTTGA
CGTAGAGCAGCAGAACAAGGCTCAGGTTGACAAGGTACAAAACGCCGAACAGAATCTGCA
GACACAACACAAAAGCGCATTGCCTAAGCACAGCTACCAGCATGACTGATACGGCAACAC
AAGCAAACAAGACGATGCTGACAAACAAATTTAGCACCGAAAAGGTGACCTGAGCAGCGA
ACACTTGGCCGGCGGTGAGGAACTTGATGGCGGAGTAGACGTAGAGGAAGCCGGCAGGGT
AGACCAGCGGCCCGGTGTCGCCCTCGATCTTGGTGTAGTCCGTCTCCCCATCCCGAAAAG
CATCCACCTTCCACGCGGAATCATCACCCGGAAGTCAGAACCTCTGGTTAGACCCGAATT
CGAGATTCTCCGACCAAAAGAGGAGAAAAAAAACGAGCTTGGTGCTCGATCGCAGGTACC
TGAGACATGTAGGCGTCCCAGTCGATCTTGGTATCTGCACACGGGAGCAACGACGCGGAG
GTTAGCTGCGAGCAGGAGATGACTGGGAGGGAAATAGGGAGCGGGGGCAGGGCGCGGACA
GGGGACGAAGGCGACGATGAGGGCGACGAGCGCGGCGTCGGCGAGCAGCAGGAAGGCGGC
GAAGCGGAGCGGCCGCCTCCGGTCTGCTGGCTTCCCCGGCGGGCTCGCGGGGCGCTCCCT
CGCCAGGCGCGCCCGGCGCACGGCTGCTCGCTCAGCGGCGAC