morexGenes - Barley RNA-seq Database

Contig contig_42515
Source Contig contig_42515
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42515 (8720 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_42515

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58279	3	3860 bp	MLOC_58279.3	Available	Available	LOC_Os01g68320.2, FRAME:-2, EVALUE:0.0, 13101.m07437 protein DEAD-box ATP-dependent RNA helicase 30, putative, expressed
CDS Structure of MLOC_58279

Contig Sequence (8720 bp)

>contig_42515 8720 assembly3_WGSMorex_rbca.fasta
TAGGGCATATTTCCAACAATACTCCCTTACCCGCTTTCAACGTCGGCCTCAACGCCTAGT
ACAGCTACTCGTCGTCGGCGTACTCGTCAGCACACTCGGCCGCGCCGTCTCTGTGTTGTG
GTGTCCTTCCATTCGTGTCCACTTCGTCGCTGCAGTTTAACTACGCTGACGCCGACATGG
ACGAGATCATCACGAGCGGCTCCGTCACCGACGCGTCACACCCGGAGTTCGGCGTGCAGG
ACAAAACAATGGACACCACCGACGACAATAACGACGAGCTCGACGACGCCGGGGAGGAGG
AGGGAGAGGAAGAGTTGGTGGGGTGGAATCCGAACCAGTGCCAAAGAAGAAAGGAGGGAA
GAGAAAGCTGGCAACAAATGCCAAGCGAGCCGAACCACGCGTCAAGTGGACGTCAAAGGA
AGACGAGTGCCTTGCCAAAGTGTGGAAGACCGTCAGCATCGACCCGATCGCCGGCGCGAA
TCAGAACACCGACACGTACTGGGAGAGAATCAAAACAGCGTTCGACGAACGCAAGCTCGT
CGACCCCGGCTTCGCTAACATTCACATGGACCGCGGCAAGAAGGCCATGTCGAACCAATG
GTCGACGAGCAACAAGTGGCATGGGATCGTCGAGAAGGTCGCTGCTCGCACGAAAAGTGG
CGCCAATGTCGAGGGTCAGGTGTGGACAAAGTTCGTCGGCCCTAGTTTGTCGTGTCGCCA
TGTACTTCAGCGACATGTTTTGTATGTTCGCCGTGTATCGCACCGACAACAAAGAGTTGA
AGCTCCTTCACGTGTTCTTCACGAACGAGTCATGCGAGAAGTGAAGGAAAGTTCAACTCG
CTCTCGACAAGGCCAAGGGGACCTACAACTCGGACGCGCCTGCCCCGCGTGCGGCAGAAG
GGCGCCCAGATGGCACCAAAAGAGCCAGGGTGGCGAGAGACGGTGCGTCCGCTGCCGAAC
GGTGCAAGCTTCGATCGAGAAATGCATCGCCGACGCCAAGAGCAGCACTGCCAGGAGGGA
GGAGAAATCCGACGCGCAGTGGTCGGCGTTGATGGGGAACCAGCACGTCGAGCTCGACTT
TCTGAAGACCAACGTCGCCGCGAAGAACAGGAACACTGACCTGGCGTTCTTGATGGGGGC
AGACACGTCGACGATGAACGAGCAGGTGAAGGTATGGTATTTCATGGAGCGCGGCCTGAT
CTTAAACCAGATGTCAGTGCCGACGGCGACTACAGCGGCAACCGCGACGACCTTGACAAA
AACCACGCCGCCGACGAGCCCTGCAGCAGAGGAGCCGCACTGCGTCGAACCGACCCCGAC
AGAAACCACGCCGCCGACGAGCCCGACTATCATTTCTTTTTTTATCACCAAACTATTGAG
TGTGTTGATCGCCGAATTATGACATGCTGGCAGGCCAAAACCTGGGTGCGCGGCTAAAAC
CTCGCTTGCCCTAAGGAGAAAAAAAAAAAGCACCAGCGCAACAGCAAAAAGGCTTTCGCC
AGCCAAACGGGTAGAGATGCTCTAAGAGGGCGTACAAAGCAAAGAGCAAAGGGGGAGGGA
CAGGCCAAGAGTCCTAACATTGACGCATCCTTAATTCAGACGCATGGAACCTCGACTTCG
GTTGGATATGGGAGAGCCCTTCAGATACAGAGAGATACAGAAGCAAACACAGGGACGACT
AATGTAGAAGCAACACAAAGGGCATCTCCGACAATTAGACACAAAATACATGCTTAGTTC
ACTGTTTCGATTGGACTATCGTAATCTATAGTCGCTGATACATGAGTTCCTTTTCATATG
AGCCCCAGTACAAAAATATTAAGAACTTTGTTTCGATCTTCTACCAGTTGCAGGATTTCA
AAGAAATTCCCCCAAAAAATGTATTTAATTTAATGCCTAAATGTATGCAGATAAAACTTC
ATCTTTCTGTCTTCTCCAGCATGAGAATGGATCTTCTTTCTTAGTATCTTCTACGTACTG
GAATGGAATTCGATCCAGAACGGTTACCACCATACCCACCACCACCAAACCCACCTCGGC
CCCTTGACCGGAAATTACTTCCTGGATACAGAACAAGAACAAATTAGCAAAAGAGAATCA
AACAAGGCAAATTACGCAACAATTTACTTGAGAACATTTGGGTTGGTACCTCCTCCCATG
GAACCAGCTGACTTGGACATAGCTTCTAGCGCTGGATTCACAACCTGTCCAGCTTCACGC
AAGATCTTAACGAGATTCCTTGAATATTTTGAATTGGAATGGGTGAAGAACGTGAAGGCC
ATTCCAGTAGCACCAGCACGGCCAGTTCGACCTATCCTGTGAATATAATCTTCGATAGTT
GTCGGGAAATCAAAATTAATCACGCACTTAATATCCTTCACATCTGCAAAATCAACAAGA
CCATCATCAGTATAAAACAAGATAAAAGCGTCGCCCTGATTCCTGAATACCAGTGCGGAC
CACACTGGGCATCAACATTGTCGATCTCCACAGAAAGGTAGCACATGGCTTAGACAAGAT
CCAAAGAACACTGCACAAGGCTTCACTCTCAACATCTACAACTAACACAAGTCGAAGGGG
CTGCAGAACTGAACTGGGTATCAATCACTGCTGGATGTGGAATTGATGGTGCTTAAACTC
TCCGCCTTTTTTACAGAGCGTGACTTTTATACAATAATGTACCAACACCATATATCCGTG
TGAACCAGAACAAATCTGTCACCCACAACAATCCAACACAGGCCGCAATGCTTAGGTGCT
TCATCAGAGGTCAACTTGAGGATTTCAATGACAATACTACAAACCATCTTTAGACCAATT
GGCAGTGATACCGACAGTCAAGGCACTTATAATAAGCAGACAATAAGTCTGAGGGGGAGG
GGGGCAGGGAGATCCTTACAGTTCTATAAGAATGAACAAATTATCCTGATTACCTATGCA
AGTCATACTGTGTGAGCACTTTTATTGCTTCACTCCAATAAGGGCAGTCACAGTGCTCCA
TGGTGTGTAGCCAAAAAACTGATTTGGCACTTTTCATGCGGAAAGAGAAATTTAACCTAT
CTTAATCTACATATAGCTCGTAGCACCGAAACTACACCAACTAACACTTTTCTCTAACAA
AACATATTAAATGAGAGCACTTCTAGATACAACACTAAGATATAAGCCATTAGAGAAGTT
GTATCTAAACACATAATTTAATGTACATGATTGAACTTAAGATATGATGCGTTGAGAGTG
CCCTAATCATAATAACTTGGCATGTTGGTATATGCTCATTCTGAATTATTACCAACATTA
TATCAAGAGATCAATGAAATGAAAGTTGGAAGGCTATTAAGATGCAAAAAATAGACTACT
ACTAGTTAGCCAAGATGGTACAGTTTGTAAGATATGTAAAGGATGGCACTTACCGTAAAA
GACAGCAAAAAATATTTATAGCAATGCTTACAGGAAGATGTCTTCCAGGAATAGTTAGAA
ACCGATTAAGATGCATATTAAATAATAGTAGATGCTGAAGTGAAGATGCTAAAAAAATCA
ACTAACAGAAGCAAAATACTCGAGACAGTAGGATATTGCCCTATTTAAAACTAAGTTAAG
GATCTCCCTCAAATGCAAAGCCCACAGGTCTAACAGGTCTCTAAACCGTAGACAACTTGG
TCACCATGATAGACGGAAACTGAAGTCCCTGGTAACACTGCCAATTGCTTACGCTCAAGT
GAGGCAAACGGAGGGAAAAGATGATCTACCTCTGACTTGATAGCACCTCGCATACACCAC
CAACCCACAAGTTCAGTTCACTCAACCAAAAGCAGCTGAACAGCCCTCCGACTTATCATC
CCTGAGCACTTGGAACTATAACATAATCCTAATATTCAAACAAGTCACCATACCAAGACC
ACGTGCCGCTACATCTGTGGCAGCCATTATAGGACTCTTCCCATTCTTAAACTCTGCCAG
AACATAGTCCCTTTCAGACTGAGCTTTATCACCATGTATAGATAATGCTGGCCATCCGTC
CATTCTAAGTTGCCGAGTGACCTTGTCACATTCCTTTTTTGTTTGAAAAAATATTAAGAT
TCGGCTCCCGTCCATCAAATCAGATAGAAGCTTACTTAGCCTGTGAGAAAAGAAGTGGAA
ACAAATACACATATTGTCATGTCAGTTCAGTAATTATTAGACTGAATTGCAGTTAGTGTA
CTATAGATAGGATGTGAGTAGTACAGACCTGGGATACTTTTCATGATCCGAGATAACTTC
AACAATTTGTTGTATGGAATGGTTAGCTTTAAGTTCAGCTGTTCCTATCATTACCTGCAT
AGCATAGCATAGATTTAAATGCAAAATGTTAAACAGCAGGATAAACGAAATTGTCTAGCC
AACGTTCCAAATTCACCCGTCAACGTAGCACTCCAGTACAAGGTTTGGCCTTATTGGCGC
TTTTTGAATTATTAAAGATCACAGAAGGATTGTAAATAACAACAACAGCAGAAACCATGA
TCACCTTGTAAGGGTTCTGCAGAAATTGTCTAGCCAACGTTTCAACTTCTCTCGGCCATG
TAGCGCTCCAGTACAAGGTTTGCCTGTCTGGACGGATCTATCAACAGCAAAAGCATGCAA
TACCATAAGCATAAATGGAAACAGGACTAAATCAAAAGATTTGGTAGTCAGTTCTGGTAG
TACTTACTTGTGCTAATATTTTCCGAATCTGAGGTTCAAAACCCATATCAAGCATACGGT
CTGCCTCATCCAGCACAAGGTATGTAACCCGACGTAGGTTTGTGTGACCAGCTTCCAGCA
TATCAATCAACCGACCTGGTGTTGCAATGACGATTTCAACTCCTAGCAATAGAGATCACA
GACAACAGAGTTAGATTCGAAATCATTATATTCTCAAAATGAAGTATGTAGAGGTACTAA
ATACCTCTCCTGAGGTCACGTATTTGTGGTCCCTTAGGTGCTCCACCGTAGATACATGTG
CTTCTAGTTCTCGAGTATGATCCAAACTTTGTAGCTTCTGCCTGTATTTGAACAGCCAGT
TCTCTTGTTGGAGCAAGGATCAAGACAATTGGGCCATCACCTTGTTCTGCATCCATTGCA
ATCATTAATCAACAAGATGGATCACATCTATCAACAATTTAGCATACATAATGCAACAAC
AGGAACATACCGAGTCGAGGTTGTGCACCAACATGAACCAAACCAGGTAGAATGTAAGAT
AGTGTTTTCCCAGATCCAGTTTCTGCAATACCAATCACGTCCCTGCCCTTCAAAGCCATC
GGCCAACCCTGAGCTTGGATAGGCGTTGGTTCCACAAATCCGGACTTGGCGATCGCTTGC
ATGCAGTAATCTGTTCAAACATAGTGAAAAGGGCACACAAGCATGTTCATCTCCATCCAA
GGCATGCTGCAGCACTCCCAGCTTAAGCAGCAGGCAGCTAGAATAACACCATGCTTCGAA
TTAGTACTGCATACCTGGAAAGTTGGCTTCGTGAAAGAAGCGGATAGGCTTGGGCACCTC
CCGGCCCTCCACGGTGATATCCCGGAGCTGACGGTACTGCGCCACCTCCGTCTCCGACAT
GGCCTGCACGGCGGGGCATTCCACGTAGAAGCTCTTCTCGAACGGTATAAGGCCCCGAAA
GTCCGGCTTGGGCAGGGAGAGCGAGTCGAGCCCGTCCCTCCCGTTGCTGCCACCTCTCCC
ACCGCCGCCACGGAAGCCGCCTGGTCCACCGCCACCGCCGCCTCTGCCCCTACCGCCGTA
TCCCATGCCTCCACCATAGCCTCCGCCGCCCTGGCCGTAGCCACCGACGGGGGCGGCCAT
GGGCGTGTACGGGGCGGCATAGGGGTTCTGCGCGGCGACCACGGGGACCGGCGGGGCGAG
TATGGGAGCCGCGGCCAGGTCGCTGCACGGGGAAATCAACCGCGTCAGATCAGATCCGCG
AGCAACACGCGGGCTAGGGTTGGGTAAGGGGGGTCACGTACCTGCGCCTGTCGCGGTAGG
AGGAGGGGTCGGCGTAGCGGTTGTCGGCGTAGGGATTCATGGCGGCCGCGCGGGGGATTG
GGCTGGCCGGAGATCGACGCCGAGGACGAGCGCTCGCGGAGGGTGGATTTGGAGGAGTGG
ATCTGTCGGGCACGAGGCGGCGGGTGGAGGCGTGCGTTTGCGCTTGCGGGCGGTGGGTTT
GCTTTTGATGGTGGGTGCGGCAACGTGTGGGGACGGGACGGGACGGGATGGGGGGCTTTT
AGGTTTTCGTGGCCGACGTATCAGAAATCAGAATCGTCTGCCGACTGCGGGTCCCGGTCC
GAGCACAACAAGTCCCTCACGCAACTCGCCGCGCGTGGACGGGCCGGGTGGTGCTATTGC
GTTTTGACGTCGCGGGCTTGGGCAAACTCTCAGCCTGCCTCGACGGAAATATCTTGGGCT
TTGCGTGGCATGGACCAGGTATGGTAGGCACACTCGCGCGCGGCTAAGCGTGACGTGAGC
CTGAGCCATAACTATTTTTTCCCTTTCGTTAGGGTTTGTGGTTCTCTCGGGGGCGATTTG
CCGCCGTTGAGTGGTTCTGGCTGTCCCTGCCGTCAACCTCTGCCCTGGTGATCTTCGTCG
CTAGGGTTTTGGGGGTTCTTTTAGGTGGAAGAGGTGGAGGGTTTAGGGTTAAATCTTCAA
GTCTCGATCAAATCTCATCGGGCAAGAAACGTAACATGGCTTTTGGCGGTGCTTCTGGCT
CCAGGGAGGGCGACGAGATTGAGAAGATGATGCAAGAGCTTGGACTGAGGGAGGAGGATC
TGGACGACGTCATCTTTGACGAGAAGGAAGCGTCAAAGGAGGCAGCTCGATGGGTGGTAC
TAGCCAGGGTTCACACTAAGAAGACTTACAGTCAAACTTGGTTTTACAAGAACATGAGAT
CGGCTTGGGACCTAACTCAAGAAGCGAAATTCAGACCGCTGGAAGACAATCTCTACACGA
TTCAATTCTCATGTCTTGGGCATTGGGAGAGAATTATAGAGGATGGTCCATGGCACTTTT
GTGGTGATGCGGTGATTCTCAAACCGTATGATGGAGTGACAAAACCATTGATGATCAGAC
CTGACATGATCGATATCTGGATTCAAATACATGATGTGCCTGATCTTTTATGCCCATCTA
GTCTCAGCTCTCACTTCCAAGGTAGGCGTGATAGTGTTTGTCAAGTCTCCTTCACAAGAC
TTCCCGGGCAACTTCTACTGTGTATGGGTTAGCATCAATGTCACGAAGCCGTTGAAGAAT
GCTATGTCAATGGTCTGTGATGGTAAGCGCCATATCTATAGAGTAAAGTATGAAAAATTA
CCATATTGGTGTGTTGTTTGTGGGATGCTAGGTCATCTCTTTAAAGAACACAACAGCGGA
ATTCACCCTCTGTCGGCACTGGTCTTCAATGACCCGAGGACTTCCTGATTCATGAGAATG
GGTGTGGCCCTGGTTGAGGCCGAGGACGGCGTGGTGGACGCCAGGGAGGCCCGTGAGGTG
GCCAGGGGTCGTACCCTGGTGGAAGGCGTGATCTGGATGTGGATGAAGACCCATCTCAGT
GGGCAAGAGAAAGCATGGATATTGACCCGAAGGGGAAGCCAAATGATGCTCTAGACACAA
CTATGGTCGAAGCGGACATGAATAGGAAAAGAGGCGCTGGCCTTGCAAAAAATTAGGTTG
TTGTTAACCATGGCTCTACAAGCGCATCAAAGACTGTCTTAGCTATCATGCCTTTGGAGG
TCCCTCCAAGCCCGTCTTCAATCAAGGAACCCAAGAAGGCAAGAACAGCAGTCTGAGAAA
GAAACAATGGAAGGAAGGGTCTGGCTCTTGATAAGAACAATGATGCGATATCGGCGACCT
CCCGCGTGGAGGATCGCCAGACGCATTGAATATCCTATGTTGGAATTCTCGTGCTGCGGA
CAAAGCCGCGACAATTCGAGAGCTTCGCGATCTTGCGAAGCAATTTGCCCCGGTCGTGCT
TTGTATTGTTGAAACGCAAATTTCAAAGGCGCGTGTCGAAAGTTTAGCTAGCACTCTTGG
CTTTGATAATGCATATGCAATTAGTAGCTCCGGTCGAAGCGGCGGGCTAGGTATGTTTTG
TAATAATGGTATAAATATTGCAGTTTTAGGCTACTCTGAGTACCATATAGATGCTACCGT
GTCATCTCTGGATTATGCTGATTGGAGGCTTACATGTGTGTATGGTGAGGCCCAGGTTAG
TGAGCGTTATAGAACATGGGATCTCCTCAAATCCCTAGCATCGGTAAGCCCGCTGCCATG
GATGTGCATCAGAGACTTTAATGAGGTTCTGCATGCCCACAAACATGTGGGTTTGGGACA
GAGACGGAGCTCTCAAATTGCAAGCTGCACAGAAGCTACGAACGTTTGTGAACTCACAGA
CATCGGCTACCAAGGACGATCATGGACCTTTGAAAAGAAAACAACAGGAGGGGTGTATTG
TCATGTATGGCTGGACCAAGCTCTTGCAAACAATGACTCGAACGTGATGTTCCCGATGGC
AAAACTTCATCATGAGACTAGTGCTTCCTCGGATCACTGCCCTATTCGGTTGCAGCTTAC
AGAACCACCGACAACCTCTTTCAAACAAAAATTGTTCCGATATGAAATGTATTGGGAGCA
ACATACCGATTTTAGAAGCAATCTCGAGCAAGAATGGAGAGGTGCCCAACAGGCATAGTG
AAAGGACCGATATGGTTGAC