Map Locations of contig_42491 (8273 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_42491

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58259 1 1092 bp AK353958 Available Available None





CDS Structure of MLOC_58259






Contig Sequence (8273 bp)

>contig_42491 8273 assembly3_WGSMorex_rbca.fasta
GTTCGTAAAGGAACCGGGACTAATGTGTTTTTTGAGCTGGGACGAAAGCCCTTATTTCTA
CTAGTGATGGTACTATCTCATCTTAGATGATCACGTATATGTGTGTACATCCACCCCTAT
AAACACACGCACACACCTCTTATCTCTATGAGCGCCCCCGAGATACCGAACCGGCGCAAC
ATCTTAGGTTGTTTGCCGTACCACACTTGCTTCATAGTCTTCTTCGTCGAAAAGACTGGA
ATAAATTCAGAAAAATATGACCCATCACATATTGTCATCCGTGAAAATTTTCAAGTGGAA
AATGTTTTCTATGCATGAAACTTTTCAAGTGGAAAAATTTATATGTGTGTCATGCGAAGA
AAAAATGTATTTTTTACATTATGAAAAAATAGATGGTCAGTACTAGGCTCTGATGGCCGG
CTGAATTTTTGTCCGGTCGGCACGCTAGCCGTATGATGCGCACTTCCCCGTCGCTTCTCA
CCCTGACGTGTATCTAATAAGATGAAAACACACTCCACTTCCACATCGCTTCTCATCAGC
ATGCGTCGTTTGGTGTAGTTGGTTGGCCACCATTCTAGCCATCCTTAATCGATTTGATGA
GGAAAACACACCGCAGGTTCATGGCAAACTCCCATGGCCGTTACATCAAGTAGCGTGTGT
CCACGCTCCCCCACTCGCCCTTGCCGCCAACAATTGCCGCCATGCGCGCTGTCGACAATC
GTTGTCGATACTTGCAACAACAAAAAATTGTCGAAAGCAGCTATGCGTACGGCACCCCAA
TTGGATCATTTGGAAAAGTGGTTAAAGCCATGGTCGAATTGGTCATAGCAAAAGTCGTTG
GTTCAACGACGAACACTGGCGGGAGCATTTTTGGGTGCTGGTTCCAGCAAGAAAAGGATA
TGGTTGTAGCGAAAATTCGACTTCTAGAACAAGGTAAGATGGGGAGCTGTTAACCACAAA
TTAACATTTCGCTTAACTGAAAGGAGTGTGCTTGGTGTGGTAAAAATTCAGACAACACAG
TAATGGGTCCACACAGGTTTTTGGATGAGACTGCCCCAGGTCCACACATCATAAACCAAA
CCTGCTACTCCATAACATCTGGTCATCATCATCATCATACACAGGGTTTTGCACAACCAG
TACAAGGTCCTCCTCATATACCAGGGTAACATGATGAAACCACGGTTATTTTGCACAACA
TGGTTGATTTCCTTTTCGGCAAGGAGAAACTATTACCAGGGTAACATGATGAAACCACGG
TTATTTTGCACATTTCATCCCAAGTTTTCGCTGAACAGGAGGCTGTGCGGGAACTCCGGT
GCTACGGTAAGGTCTCTTCTACCTCTAGAACGGTATCGGGGCACGTCCTGGCCATGTTTC
GATCTTCTCAAAGTACTTGACGGGGATGACGCCGTCGAAGCCCTCCGTCAGGATCACCTT
GTTTTCTGAGATGTATAGCTTCATCCCGTCTGAGAAACGGATTCAGAAATCAAATGTTAG
CCTCTATTCTAGAGAGGTAGTGAATGGGGAACCCGAATCATTTGCTGCTATTTACATGCG
GCGGTCCTACCTTGCAGTGCCTTTCTGACATTCAAATATATCAATATGTTTGCGCTAGTC
CGCATACCTGAAGAAGACAAACCGTTAGTCCATGACAAGGCATAGGTGGAAGAAACATGA
GACCGCAAGCTGGGAATAAATAATTATCGGGTGTGGGTTGATGATGCACCTAAATAATAA
AGAACAGCAATAACTGGGAGCGCACCAGATTTACATTGGAAAGATTAAAATGGATAATTT
TCAGCATGATTTTAATTGGAAGAACAGCTTTAGTCCTTCTGTTTGTTTCCATAAGAATAA
ACTCAATAATAGTATGTTTGAAATGGAAAACCATACCACTAATAACTCCCCCATCTGATG
GTAAACCACTTGAGAAATGTACATGTAGCCTTGCCATACGTTTAAGCCCATATTTCAATA
TTGAATCAACATTTTTCCTGTAAGTTCCATGGACACAGACTGTGGATAGAAAAAATTAGC
ACAAACGCCACCCATTCAGGAGAGGGTGCAAACAAGAGTGCCAAAATCAAATACCTGAGA
TTTCATCAGCCGATAGAATTGGTTTCAACAAGCTCTCTGATGTAACAGTCTGCAGGAGGT
TTACTTGATTATTATAAAGGCAAAATTGATTCGCTAATTCCACTAAGCTGGTTACTTGCA
AATAAAATTCACTTGATGCTAGGATAAGGTAGCAGATCACATGACACAAACCATCCGAAC
ACAGAAATAGAACAGGAACTCTGCTCTCAGAAATATGCAAAAATAAGAACGAGATACATT
GGAATTATGTGTCTTCTGATTAAATTAGGGTACGAGGGTCAAAAATATGACCACAACAAC
TGTGAGCGAACATTTAATAGAGAAGACAACTCGCTAAAAGGACAAGTTGATTGCGTTCTC
TGGCTTAAGATCTTATATAATTGTGTTCTTTAACTTAAGATCAGTTATGATTTCTTTCAA
AACACGCCCTCATGTTTATAAGTTACTCCCTCTGTTTTTATTTACTCTATGTATTAGCTT
TGTCCCAAGTGGAACTTTATAAAGTTTGACAAAGTTTATAGAAAACAATATGAACATTTA
CAATAACAATATATATGATATGAAAATATATTCAGTAATGAATGTAATGATATTTTTTGG
GTATTGTAGATGTCAATAAATTTTACTATAAACTTGGTCAAAGTTTACAAAGTTTGACCT
AATAAAAGCCAATATGCAAAATATATACAAACGGAGGAACTACATTAGTATGAAGAGAGG
TCAGGGGTGTCTTAATTACTACTCCCTCCGTTCCATAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATGTATATAGACATACTTTAGAGGGTAGATTCACTCATTTT
GCTTTGTATGTAGTCCCTTAGTAAAATCGCTTAAAAGACTNNNNNNNAGGAACGGAGGGA
GTACATATTAATATAGTCCAGCAGTAACTACATAATGTTTTAAAATAAAGGGCAGGCATG
TTTAAACCCGGCTCAGCGAATTTTCTCCAAAATGAAGCAGGTGCACTACACCATCCCTCC
GAGTCATAAGATTTTTTTCAAAGAAAAAATATAAAACTTCCAAAAATTCCCATCTTTTGC
AAGGTGAATTTTTGATATGATACGTATATCGTGAGTACAAATATAAATTATAAGTGGATT
GCTCGCGAGCTCAAATGTGCCCTCACAAACAGAAAAAGAAAATATAGTTAATAAATTAAA
GAGAGTGTAAAGTATATAATTCTGATATTTTTTGTTGGCAACAAACAACGAAGAGTTGTC
TACATCCATGCAAATTTTCGTGGAGAAAAACATTCCTCATCTCCGGGCAAAAATAATAGC
GCTCCAAAAAGATATTTCTAAAGCGCTGTGTCTTTTTTTGTGCGGAGCATCAGGAATACT
TTTTCATTCATGAAAATTTACATGTATATAGACAAATATTCCGTCAATGTTTATTGCGCA
AAAATTCAAATTATTTTCAACTTTTTAAATATTTCCTGTTAATTGTTTATTGCGCAAATA
TTCAGATCCTTTTCAACTTTTTTTAATATTTTCCTAAATAAATCTTCAAGGCTGCATTTG
AGCTCGCGACCACGAAAAACACTTTGAATTACCAGTCTGCATCTGCAGTGTGCCGACCCA
GCCAGCCCCACATGAAGGAACAGTCATTCCTTTTATATTTGCCGGATGGGGAAGGAGCGC
ACGACGAGTCCATGATGAGCCAGGCCCCAGCTCGTCATTATCGCTCCATTACGAGCTACG
AAAGCCACGCTTTCCCTTTAATCATCACCCCGTAACAGTGCTCCCGCATCGATCACCCAA
GAACTGTTCCAGCATCAGCATGTATAGGTATAGCGGCGCTCACTTCTCTGTAGCCGAAGA
GACAGGATCGCGTCTGTGCATCATCCGTTGCCCATCACACATCTGTCACTGCTGCATCTA
CTATATATGATCCATTCCATCTGTCTCTCGCAGCCGAATTAACTGGCGTCGACGTCCGTC
CATGTCGGTCGACCCATCGGCATCAACGTCGCCTGGCTCGGCTTTCTATCTGCGCTGCGC
GTGCCGTCGGCAGGGCTCCGGCGGCTCTTTCTCTCTGGCGTGCAAGCCACTGTTTCGTTG
ACGTGGTGAGCTAAAATTGACGAACCTGGCCCTTTTCTGCCGGCCTTCCGGCGGAGGACC
AACGTCGCAGTCGCACTCGCACTCGCGCGCACGGTGGCGGCTAGCTCCAGTTTGACAACT
CGTATGTATTGTACAGGTTTTACAAGAATTTCTTGGGCGCCAGAAGTAGGAGGAGTGTTC
TTCGGAAACCACCGAGCGTACGCGGCGAACTTTCGTAACGTGTGTGTTGGTCTTGGTCGT
GAACGGACATCTGCCTAGCGGATGCGAACAGCGCGTCGAATATACGTGCGGTCAGATCCG
TGGGAAGACGAGGACGTGCAGGTTCTCTCTCCGTGGTACGTGCAGGCGTGCAGCAGGCTA
CAGTAGTACGGAGGTGTAGCCCGTCGCACAACGCACGTCAAGTAAAAATCACACGGCAAC
TCGCGCGTGCGTGCGTGCATCGGTGCATGCATGCGTCAACTTTCGGGCGCACTTTACCCC
CCTAGCGCGACAAAAAGACCGTCCCACTTTACCATAGCGTGCCAACCTGTTTTAGGCCTG
CACCTTTTTTTTGTGTGCTTATGTACTGGTTTTTCGGTTTAGTTTGATTTTTTATTTTAC
TTTTCAATTATATATATATTTTAATTTTTTTTTTCAAGTTTTTTTATTCAAAAAAAAACT
CAGTTTCTAAAAACTGTTTGTGTTTTTTATTAAAATATCTGAAGTATCCAAAAATATTCG
TGTTATTCCAATTATGATTAAGAATGTGAAAAATGTTCCCATTTTCAAGTTTTCCTCATG
AACTCCAAAAATTATTGCGCTTTTCAAAAGATGTTCAAAATTTCAAACAATATTTCCACT
ATAAGAATAAAAAAATGCATTTTTGCAAAATTGATGTAGAATTTCCTTAAAAATCATGTT
CTTCAAAAAATGTTTATGTGTTTCAAAATATATCCTTCTTTGCTAAAAAATATATTTTTA
AGGGGTCAATGACAGTAGGGGGGGCTCCCTACCGCCTTAAATTAAATGTAAATAAGAACA
AAAGTACAGGGGATAATTACATCAGGAACTGAAGGAGGGGGTGGGGGGGGGGGGTAAAAA
TTAAACTCAGGACCTCTCGCACCCTAAGCAAGATTCATACCACCAGACCAAATGTCCTTT
GGTTGCAAAAAAATATTCACTTTAAAAAATAAAAAAAATCATGTTTGTAATATTAGAAAA
TGTTCATATATGTCACTGCTGATAGTTCTTATACACTGCACTCACTATCTAGACACTGAA
GGGTTCAATCCCTCACACACGCTTCCCTTTTTTTGGCAAAGTTTTCATTGTGTGCATGTT
ATTGGCCCGGCCTAGTCGGAGGAGCCTCCTGTGCGGCACACGCCTATTGGATGCATTGCG
CGACATATAGGACGTCCTGGAGAGAAGCCCCTGATATATCTAATCTGCTAAGCCAATTCA
CAAAATGTAGAGGCTGTGAAAAAAATCTTGAATTCTCATCGTGTTGCCTCGAGGCAAATG
GTGAGTGTTAAAAAATCCAGCATGTCTTGTAACACCAGTTGAAGAATCTTCTGTGACTGA
AACACCACTTCATGTGTGGGGTGAAAACATTTGTTCTTACCTTTATTGCCCGGGCTCAAC
AATGTTGTACTTGCATTGTTACCTTATTGAAGGCGTCATCACTTAGTTATGTGCTGGCCT
TCAGTGGTTGATCTCGGTATACAGGTTGAAAATCCTCGTCCTGATCATCTTCGCCCAGGC
GGGACGATGGCGGTGTGAGGACGTTTGTCCCTTTTTGTAGATGTTTTTGTGAAGGAAGTA
GACTTAGTCATAGGTCTTCCTGTGTGTGTATCCATTGTTGTTATCCTTCTGGTTGAATGA
AGATGCATATCTTGTACTTTGTGATGCTTTGCCTGCTTCTGTAGTGAGGAGCATGCACTT
GTCTTCTATGTAACATCTGTGTATACTTTGTATCTCTGAAGGCCATGTATTTTCAGTTTT
TATCTTTTTATACATGATTATTGGTCCGATGCTTTCTTTGTCCCTCCTCTAACATTGTAT
TCACACCTGCATTTCTTTTATAGCATTCAAGATTCTAGCTTTTGATAATAACCTACATTG
TCCGGAGTATTTTTGCTTCCAACCAAATTTATTGTCATTCCTTGCTTTCCAAGATGAACC
ATAAGAAAGTCATAATGTTTGTGATAGTAGTTTGCAGGTGACTAGAACTTATAATGGACA
CAATGATGTGAGGATTAAGAATGAAAGCATCGTTTTAAAATTTGGAACATCATTATCCGA
TCTCATCTTGAAGGCTGAAACTATGTTCAAAGTATCGAGATTTCATATTCAGAGTAATGT
TCGACCGATTAATCCCTCAAGACGACCTTGTATGAGAAAATATTCAACACGGGTTGTCTT
TGTCTCGTCAAAATGATTGATTGTGATATAAAAATCATCTCAACCAAAGATTATATGCAA
AAGTTAGAGCCATCAGAGTGTGGCCCTACGACAAGCCATAAATTGGTGCGCCCAATCACA
CATATGTCTAATAGGTAGCGTCCCGATTTCTTCTTTTGCACGAGCGTTTCCGCCCACAAG
ACTGCGTCGAATTGAAAAATGTTCAACACAAAAGTCGCTTGCCTCGTGAAACAGTTAAAT
TTGTATTTAGGCTCATCTTCATACGAGATTGTTTTCGGCCTATGAGACCCCAAAAACGAA
CCCACTGTCTTAGATTTACCTAAATCCGAGTTCGGTTAATTTTGAAAAGATTTGGACGGG
ATTTGAAGTCCTTTTCTTATACGGGAGTCCAGCCGTCTCACAAATAGATGAGAGATAATG
GCCAATTGAACAACACCAATCGAACAAATCAATCTATACTACTTTTTTGTATTCATCTAT
TTTTTATCCCTCTCCCTTGTATCTTCTTCTCGTTCTTCGTCGTTCTTCAAGATTAGAGGA
CAACAAATCCACGTGGTCCTAGGGGTGGCCTGGCCGACCTAGCGCAGCCTGCCGCCACGC
GTCCTGACGGGGTCCCTTCCGGGCGTGTGGTGTTTTGGGTCCTCAAAAGCACCTGTTGGA
TTGCTTGCGTACCGCGCTTTGAGACGGATCTTTTTCGACGTAAGCTACGGTGCATCACCC
TATTGTTGAGCATACCTGGTGACGTGTTTGTGTGCGAAGAAGATGGTTAATTGTAGTAGA
TGAAAATTCGTCGTGTGTGTGAGTGTGTTGAGCCATGAGCGGACAGGTGCATGTGCGATT
GCGCAGGGTGAGCAGTAGGTGCGTCCGCGCATGTAATCAACGGCCATGTCGAGGAAGAAA
ACGACGAACGGTGCATTATACGGGCGTCGAAAAGTGTGACTACGCGTCTCCAACGTCCAC
CACCGCGAGGGCCTCTTCCGCCTCCCGCACCCTCTGTCTGGCATGACGGACACGCCGCGC
CATGTTAGCGCCCGAAGACGCCCATGGCGCGTCCTTGGTGCGCCAACGGAGTGGTTGCGC
GTCCGCCACGACGTTCAGACACTAGACGAACCGCACCGCCTCCGGTGAGGCAGCGACGCC
GGATCGAAGCATTGACTGTGCCGATGCAATGGATTCATGACACTGCGAGTCAAAGTGCTG
TTGGAGGGCGGCCGCCTCCGGAGGTGAGCTTGGGTGACGGATGGGTGTGGAGGAGAATGG
AGTGAAGTGGCTAGGGCTTGGTCCGGCGAGCGGATGGGAACGAATATATGTAGGTACATG
CGGGTCAGTGCGGGCCAGGCGGGCATGCCCGGGCGTGCTCGGGCTCCTCCATATCCGTCC
CATATTTGGCGTGAATATGCAGGATACGAGTCAATCCGGAATTTGGAAACCCATTTAAAA
CATCAAAGTCATTTTTTTGACATGTGCATGGTCTCTCGGAGCGGATCCCATACACACACG
GCATGTTTGTTTACACAGACTAGTCTAAAAAAATCTCCTTTAGTCCCTATCTCCACTAAT
AAAAGCACGAGAGGGCAGATCTAAATCACCATCTCAGCCGTCCAATCACTTAATCAACGG
CCTGGATACTTCGTTAATGAAACTAATCAGTTTTTGTTAGCGCTAATCAATCC