Map Locations of contig_42490 (10489 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_42490

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58257 1 835 bp AK372381 Not available Available None
MLOC_58258 2 3224 bp AK367082 Available Available None





CDS Structure of MLOC_58257






CDS Structure of MLOC_58258






Contig Sequence (10489 bp)

>contig_42490 10489 assembly3_WGSMorex_rbca.fasta
TTAGGAACGGAGGGAGTAGATAATTAATCCTACTGTAGGATTAATTACAAAATCTAGTTA
CTTGCTATTTGCATAAAGTGAATGAACTGCATGTAAATGGGTCGTCGGTCGGCCCACTTG
CACCCCGACATAGGTTGGCAAGAACTCAGAGAAGACCACAGGACTATAAATGCAAGAGAT
GGAGAGCAAAGGGACGTACACTCAAGCGTATATTTGCATCCATAAGGAAATCCAAGACAT
CAGCTATAGTCTGTTGTGGGTGGGGTGCCGGCTGCAGTTTCCAACGCCATTCCAGCTTTG
TGCCTTGTTTTTCGAATGTCCATGACAACTAAATGGTTGAAAAGGGCGATATGTCAGAAA
ATAAAAGAGGAACAGGACAAGTGGATGTCCTTCCATAAGCTAAAAAGCATGAAGAACCCC
CTCTCAACATAAGTAACGATCGTATAAACCTCCATCCGATTCAAACCTATTAATCTTCGT
CATTGCCCAGGATGGCAGTATGCAAGTACCTCAATAAAAGTTCAATTTGCACATACCATG
TGAGTAAATTGAAAATAACAGTACCTCAAAGCCTCAAACAGATTGCTAAGGCATCAAGAC
AACGGTAAAAGAAGAATGTACATCACTCTTAAAGGAAGTGATGAGCAGACACTACCGAGG
CCTTTTTTAGATTAACTTTTTTTTGTTAATGAACAAGTCCTGGTTTATATGATATGTTTA
GAAAGGACTGGCGAATCATTCCAGTGTATACATAGTTAGTATAGAATATATTAGGTTAAA
CACTTGTATTGGCAACGACATACAGCTAATACCAAATCGGCATTTTTCTCAAATTCCAAC
TCATCTATATCTGTGACCGTCCTTCCCATGAAACCAAGCAAGTATAGTTTAACTTTGCAA
CTGCTTCGCAGACTAGGAAGACCGAGATCCAAAAATTGAATGAAGGTCAGTACTCAGGTG
GTGTGGGGGAGAGACAAGTCTTTTCTCATTGCCAACGGCAACATCACAAATTGCTTCCCA
AATTGGGTGCAAAAGAAGAACATCACCATCACTACTATGAAACCCAACACATGTCAACAC
TAATTACTTTTGGTTTTGGGGGTCACCGGTTAATATTCCGAATACACTACTTGGATGAGG
GATATTGTGGTACATGGGAAATACTTATATAATAGACAAAATTAGCGGTGAAGACATGTG
ACACTTCACACATGAAGCAACATGAAGTCATTACGAATTATCTTAAAAAAATTAGGAGCC
TTTTAGGATTAGCCGAACGCACCCTGCGGCCGGCGCCAGCCTCGTGGAAGGAGTAGGTGG
AGGAGGGCTGGTGGAAGGCGAGGTAGCGCTCGGCGAGGGCGAGGTACTCGGAGACGGGCT
GGTCCCACTGCTCGGCCCGGAGGCGCACCTCGGCGTCGGAGGCGTCGGCGACCCAGGCGC
CGGCGCCGTCGGTGACGGCGAGGGAGAAGCGGGTGGGGAGCCACGTGGCCTTCACGAATA
TGCCGCCGCCGCCCGGCGCCTTGGGGTCCTCGACCGCCACCGAGAGCTTCGCGCAGCTGT
GCCTCGGCGCCGCCGCCGCGGTTGCCATGGTCGCCGAGCAAGAGGAAATCGGCGGCCCTT
GGGTCAACGCACGAGGAACCACCGACGGGCAGAGAGGAAGGGCTGACTGTGGGCTATGTT
GGTCTAGCGGGCCTGTGCCCCCTGGGCTGCTTCCTTCAAGTTTAGGGCTGGATATGCATG
CGCACCGGCAACATTTTGTGTTGAAAGCTGAAGAAAGCAAGCCCAACAACAAACACATCA
CAGACATGCTGGTGGTGTGTGTACTGGTGTCAAAATCATTAATTAAGGGGGTACCCTCTG
CAAAATAACATGTTTTTCTTAAATAAAAAAATTGTTAACGACAAGTGGGACACTGCATGT
GAGCATGTCGACACATATAAGATATAACAACATGTCAACCTAAGAATTTTATGCTTTTCT
CGTAAATTCAAAAACACACAAAAGATTAACCACCACCCCCTACCCCAGAAAACGCCTGGA
ACAAAAACAGTACTGTCATGGGTGCATCCAAAGCGTGATACGTGGCGATAGTAGGACGCA
GTGGCGCGTTGGGGCTGTTCCGTGGTGTCCGTTGCATTTCCCCGCAAAGGGGTGCCCAAG
GACTAGTAGTTGCCATGTTTGATTTGAACTAGTGGTTGCGGTCCGTCGTTGCGGACCGTT
TGAGATGGAACTGTGCACATCGTACTTTTATCTTAAAATTAAAAAAAATCTTATGTCGTG
TGAACATCACATCCATCTCAAAAAGAAAAATTAAACCTACAAAAACTTTTTCTTCAAAAA
AAACTCCATTTTAGAAAGAACTCCAAAAAAATCAAACACTTTCTCACTGCGATCAACCAG
CATGCGTCACATGACATAGCTGGTTTGCCACCATTCTAACGATGCTTGATATGTTTGTCG
TGTGAACATCACATCCATCTCAAAGAGAAAAGATTAACCTAAAAAAAAATTCTTGAAAAT
AGTCTCACTTTCGTTTTGAAAAGAACTCTAAAAAAATCAAAAACTTTCTCACTACGACCA
ACCAACATAAGCCACATGACGTAGCTGCTTGGCCACCATTCTAGCGATGCTTAATGTGTT
TGATGTATCGTGTGGTGATAACGGGCAACGACACATTGTCCCAACTTTCTGGGCCAGCCT
TAATAGAGTTTTTAAAAATTAATCCGTAATAGAGTTGACGTTACGTTCTACAAATTCTCC
AAAGAAGCACTCATGCAATTCGCGTGTATTCTTATTTAGGTATGTAGATGTATCCACATC
GTTGCCGCAACTCTTTTTCCGTCGCTGACTCGGTGAGACACCTTGATCGCTACTCTATGT
TCGGAATGAGGAGGTAGTGTTTTATTCATTGCATAAATTGTTGGTTCAGAAGTACATGCT
TAAGTTAACTAGCAACATATTATCCAAAGAAGCACTGGTACAATTTTTATGGGCTTTGGA
GACATGCCAGACCACTGATAATGTAGCAGATCGTTTTGGGCATATTTGTTCTGTCATTAA
CAAAACAAATTATGAGGTTCTCGAGTGTGCATACCTCATGGCTGGTGATTTCATTAGGCC
TATTGATCCATCTTTCTGCGAACTGCACCCAGTATTAAGAAAAAAAAGTCATGGCCTCAC
TAAAAAATGATATTGGAGCCATAGATGAAACACACATTGAAGTTATTGTGCCCAAAGAGT
TTGATCCCACACACAGGAATAGGAACAAGGTTACAAGTGAATTTTAAGATTATTCTCACA
TTTATAAGAAGCGTTTTGAATTTCAAATGTTTACAAATTTCAATAAATGATTTTAATTTT
AAAAAACGTATTTCGAGTAAATCTTGCAAATTTTAAAAAGTATTGAATTCAAAATATGTT
AAATAGTTTAAATATATATTTGATTTCATATATTAAGAACTTCTCATGAATTTGAAAAAT
ATTACAAAACTACCATTTCCCAAATTTGAACAATGTTCCCAGATTTAGAAAAATGGTCCA
ATATTTTAAAAAAATGAAGTTGAAAATGTTCTCAAATATAACAAATGTTTTGAATTACAA
AATTGCTTCAAATTAAAAAATATTCACGAATTTGGAAATGCACAACCAAAAAATGATTAT
TTTTTTGAAAAGTCATGAAGAAAAACAAGTTTAGAAAAGATTATAGAACCTTACCAAAAT
AAGTGGGAGCAAGTGTAAATGGGTAGGCCCAATTCTTTGTTAGTCTGCACGAGTGCGTAG
TATTCACTGTATACGCTGGGTGTAGGATTGATGCGCCTGATAAGAGAGTAACTAATCAAC
GAGTACCCCGCAAGGGTCGGTTTGGGAGGATAGAAAGCATGTCATTTGAGGCGCTCTCAG
CTGGTACCATGTATCGCGTGTTGGACGCTTCGTTTGGATTTTTATTTTATTTTTACTGTA
TGCGTTTTTGGCTTTTAGATTATGTTTTCTGTTTTGTTTTGTTTTTGACTTATTCGTTTT
TCGACTGTTTTTCTTAGGTTGTGTAAAAGAAATTGATTTCTTTTTGAAAAAACATATTTT
TTTTTCTTATGGAAGGCACATATTTTACTTTTCATCGAGGCAACACTTTGCTTACAAGAG
AGGCACGCCTCTCGAAAAAGAAAAAGAAAACATGTTTTCTCTTTTTCCTCTCAAAAAAGA
AATCAAACATTTTTTTTGTGAAAGGCACAAATTTCTTTTTTCGTGGAGCCATGGATTAGC
TGCACATCCATGCCTCTTGAAAAAAGAAAAAAAATATGTTTTTTTTGCGAGAGATACATA
TTTACTTCTTGGGAAGGCATAGACTAGATTTCGTGAGAGGCACAGTCATGCCTCATGAAA
AAAAACATGGTTTCACAAGAGGGAAATTTGTGCTTCTCACGAAAAAAATTTAAGAGGCAC
GAGCCTCTCGCGAAAGAAGATCCGTGTCTCCATGAGACATAAATCCGTGTCTCTTGTGTA
ATCAAATTCATGTCTTCATGAGAAATAAATCCGTGCCTCTCGTGTTTTTTTTCCTTTTCA
AGCACGATCATAACTTTTACTGAATCAAATCTGTGCCTTCAAGAGTAGTAAATCCATGCA
TCTGGTGATAGGAAAAAAGAAAACATATTTTTTGTCCTTTTGCGAAAGGAAAAGAAAAGG
TAATCATTTTTTCAATTAATTTTAAATTTTAAATTCCAAAACCTATAAAAGTATCTTCAA
CAACAGCGCTAAAAAACGCGCGCGCGCGGGAATCGTGGATTTTAACGCGCGCGGAGAGGT
TTCACGCGCTCTAGCGGGCCTGGGAGATTTTGGCGCGCGGGAAAAGATCGCGCGCGTGCG
AAAAATCGGCCCGGCGTGCGCTAGCTTTGGCGCGTGGCGTTCGGCACACTTTATAAATCC
AACGCCCCTCCACGCGCCCTTCTCACCGATGTGTGCCTCACCACGCGTCCTCCCACCGCT
CTTTCTCGTCTCTTCTCGCCTCGTCGCCGCTGCACCACCATGCTGTCGCGCCGTCGGGGT
AGTTCAGGCTTCTGCGGTGTCCGCGAGCGCCCCTCCTTTACCTTCTACACTGAGATCCGC
TCCGACGGCATGCGCCTCGGCCTCGACACAGCCGACGAGGCCGCCCACGCGTACGATGCG
GCGGCATGGCGCCTCGGTCGGCCTCGTAGGGACATGAATTCCCCGAGATGATGACGCGGG
GGTAGGCGCAGGGGCTCGCGCCTCCCCCGCGAGTTGTCACCGAAGAGGACCGTTGCCAGA
ACCGGAGGCGGTAGCACCGCCTCGGCATCTGAGATGGACAAACATGCCATGACGCAATTC
CCGCAAAACGTCCTTGACGAGCGCGCATTCTTCGCGCAAAGGAGGGCGGAGCGAGCCGTC
TATCGTAAGGATAGGCGTATGCGAAAGCAAGCCGCACTCTTCAACATGAAGCTCAAGGGA
GCGTCGAATTAGGACTCCGGCGATGAACGGTGTATTGACGCCTTCATCACGACGGAGGAG
TCAGACACCAGAGCGTCGGAGGAAGACGACGAGGAGTAATTTTTATAGTTTTTTATTATG
TATGTTTTTATCTTTGATGAACTATCGACGAGGAGTAGCTTCTATCTATGAACTATCTAT
ACCATCCTTTTTCGTTTTTTATTATGCCTATCATCTTGTTTTCACGTAGAATGTGTGTCG
CGCGCTTTAAATTTTAACGTTTCTGCTGGAGCGGCGGTAGCCAGCGTTTTGTAGCATGCA
AAAAATTGATATTCTCACGTTGTAAACTTATTTTAGCGCGCCGCGCGTTTGTGCGTCTGT
TGGAGATGCTCTAAACAACCAACGAAAAACCAAAAATACATTTAAAAGACAAAATGAGTG
CATGAGAAAAAATCTGGAGGGAGCATGCAGAGCGCGACATGTGTGTCGACGAGCGCGTCT
GCTCCCTCTTCTTGTGCTGCTTTAGAACAAGTACAATAAGGTACAGTCAGCAGACTGTAA
TGATTAAAATACTATAATTTTACTGAGTTGGATGAGAGAGAAGGAAAGCGGGCTCTTCGT
GAAGAGACAGCTCTAGCACGTGCTCCTATGTGCTTTGTGAGAATGAAAGGTGGGCCATAT
ATGATAAANNNNNNACTCTTTTATAGCTAACTATTATACAAGTTAGCTATAAGATGTGCT
ATAAGACTGCTTATAGCCAGCANNNNNCTATACTATTAACCATGCTCTTAGTGAGCTTTC
GCACGGTTCTAAAGGCTTCCATTTGTTTTGTTTTCTTACTGGTTTTATTGGCTTTCTTGT
TTTCTGTATTTTTCCCTCTTTTCCTGTTTGTTTTCTTCTCTCCATTTCCCCATTTTTTAA
TTCATGACCACTTTATCCAAAAATCACAAATGCTTTGTAAAATCAGCATACTTTTTACAA
TTTATCAACATTTTTAAAAACTGTTGGCAAATTTCAAAAAACACGAATAGGAAAAAAGTT
GGTGAATTCGAAAAATGTTCGCAATTTTTTTTCTCAGTTTCTAATAATGTTTGCAAATTT
TAAAAATGTTGGCGAATTCAAAAAATGACAAGTTTACAGTCAGGAGCATAATAAGTAAGT
TTGAATATTCCGATGAGTACTAGGTTGATTCACTTTAGCAACTGTTGTGATTTGAAACAA
AGAACAAGCGACCCTTCGTTTTGGGCTATCTCAGCCTCGTCTCAGGTCATGTTCTGATTC
TGGAAGAAAGGATCGAAATATATACAACCATAACCAAAGCTTTTTCTCGAACTTGCTAAA
AATTATAAATGTGCTTCCCTATACATTAGTATATGAAACATAAAAAACTTAACCAGACAG
AGGGATGGCTACACGTAACTTAAGAGAATCTCCGTTTTGAAATGAAAAAAAAATAGAGAA
TTATTTCTAACCAATTTGTGTCGATTTCTCAAAAGCTTCAGCGCACCCGTTCATCCATGT
ATAGAGGAATTTGTGTTAATAATCAAGGGAATGGCCTAAAAGGATATTGGCACGGGAAAG
AACTGACATTTAGTCATATCATATTTCTCAGTACAGCAGAACAAAGGAAAGGTGATTCAT
CTACCAAACAGTAGAGATGGCATATCATGTCCATGAATTTTGTGTAACTGAATATGCAAG
GCTTGCAAGTTGCAACAATAAAGAATACTGTAATGGAATTAAGTTGTGGCGCGTCCTTAA
TAAGTACATGTCCCGTTAGGACCACTGAAGAAGAAAAACCATGCACTTTTGGATTAAGTA
CAGTACAACAAAATTTGTCTTGAAAATTGCTACTAGCTGGTAAACAAAAATTATTTCGGC
TACAGCGGTCATCACTATAGACATTTGTCCACAAAGACAGATGTACTGACACCCCCAGAA
GTTGGATGTTTCAAAATTTATTTCACCGGTTCACCAAGACAAAGACAAAAGGAAGGGACT
CACTCAAGTAATAGTTGCAAACCATAACTATAATTTAGCTCCTAATGAGAAGTGTGTGCA
TTGCCTGGAATGATAAAAAATAAATTACTATGCTTAATCCAATTTGTGCAGCAGACTCGA
GACCCAGATGAGCAGACATTTTGGTTTGGTTTGAAGGAACCACCAGTGAATCAATACCTT
AATGTGTGGATGCAGCAGACTAGGACGGGTAGGGCGTGTAAACGTTGCTTATTGTTCTGC
ATCATCTGCTAGCATCTCCCGTTCACGGAACTTATGTAATGTCGGTGTCGGATTGTTGGG
AAGCATACTGACAGAAACCAGAATAGCAGCCTCCAATGCCTCGACCTCCTCTACTCTCGC
ACACTCACAGTAGATCTTGACAACAAGGCTCTTGAGGGCAGAGAGGTGGCGGATGCCAAG
ATCAGCAGGAGAACCAAGTCCACATGCAGCTCTCACTATATGCACAACAATCTGAAACTC
GAGCGCTTCAAGCATCGGCATCGCTCCTTCCAAGAACATCAGGTTCGTCCAGCCGACAAA
GTTGAGTTTCTTCAGACATCGGAACCCACCGTTGCTGACAACGAGACATCTTTCTTGGGG
GTCTGGTGCATTTGAGTATGACTTGAGAAACTGCAAGACAGGGAAGGACGCAAGCATCTC
GACAGTTTCCTGTACAACGTCAATGTCGATGTCTAGGTAGGTGAGGTTGGCCAGTGAGGC
CATCCACACTGGGATCTTCCTGAGGCACCAGCCTTTGATTGACAATTCCTGAAGGTGGTG
AGGAGGAGGGGACCAGGACTCCAACAAGAAGTCCAATGACCATGGGCTTATGAGCGTCAA
ACATCGAAGGTTAGAGGCCCCTAGTTTGCCAAGCGATGAAACAAGACTATCTGCGTATGT
CATTCTACCCTTGTGTGCATTACTGATGCGCCAATCCAATCCAAGGCTTCTTAGTTTGGT
CAAGCTGCCAACTTCTTGTAGCGCGGTTACCGGGGTAGTGTAGTCCACAACCACAAGTGA
CAGCGACTCTAGAGCTTGCATGTTGCCTACTCCATTCGGCAATGTCACGCGATGAGCCAT
TAGCCATTTCAAATTCAAAAGCTTAGCAATGCTTGCAGGCAATTCGCTTGTACCGTAGCA
GTTAAGAAGGTCCAATATCATCAATAGCTGCAGCTCTCCTATTTGTTCCGGAAGTGTAAT
GTTGTTACTTGCTCGAATCCTTAGGTATCTCAACTGAAACAATTTCCCTATATCTTCAAG
GTAGGAGCTTTCCAAATTCTCATTACCATCCAGATCTAGCACTCTTAGAGCCCGAAAGTT
CAAAAGAGGAGGCATTTGTTCAGAGTACCTGAATATGTTGAGGGATCGAACATGAGCAAC
AGCCATGGAAGAACGTGTTAACATGTTCTCTACATTGGTGCAGTCAGATGAGAGTCGATG
AACTTTGCCTTGCATGCGCGGTACTTGTCTTTTGTCTGTAACTATAGTGACAAAATTATC
TTCGACTGCCTTGGATACAATAAGATCGAGAATCAAATCATGCACCCGGCATGCATATAC
CCTACCGTCGTATTGAAAATCCACCACTTGGATCAGGTTTCTGTTTATGAGTTCATTAAA
ATAGCATTCCCCCTCCTCCTCCAGGTTCCTGCCTCCATAAACCTTGATGAATCCTTCTGC
TATCCACCTTCTCACCAAATAATCCCTCTTGATCACGTAATCTTCAGGAAACATACTCAT
ATACAATAAACATGTCCTTAAATGACGAGGAAGATCATTATAGCTCAAAGATAGTATCAT
GTTCATTTCCTCCACATCGGAGTTTTTCTCGAGTCCAAAACCAATCGAACCACAAACCTT
CATCCACTCTTCTCTTGTGTCTGACTTGGTGGTTAACAGACTAGCCATGGTAATGATTGC
CAAAGGTAAACCACCACATTTCTTCACAATTTCAACTGAAACCTCCTCGAGTTGGTGTGG
ACATTTATCTTCAGAGCCGAAAATTCTTCTGAAGAACAACATCTTCGAGTGATCCTCGCT
CAGCGCCTTCAGTTCGTATACAAGATCACAATCAGGGGAGGAGCATGATTTCGCAACGGT
GCCGATTCTTGTTGTCACGATGATTCTACTACCACAAGTATTCTCGCTGAAAGCACATTT
GATAATCTTCCAGGCTTGGGTACTCCATATGTCGTCGATTACGATCAAATATCTAACACA
TGATAGAGAATTATGATTAAATAAACAGAAACACAAGCATGCTATCTCTCCGTATTTCAT
CAACACAATCAAAATGTTCATGAGAAGACAGCTCATTTAGATACCTCTTATCCTGCAGGA
AATCCCTCAATTCATTGATGAGCTGCTCCAAATCACCTGATCCAGTGAGCTCACATTCAT
CCTTTTTGACTTGAGAAATCATTGTTCGAAAGATCATCCCAATGTCTGGATTTTGCGACA
GGGAAACAAAGGATTTGCAATCGAACCGGTCTCCGATGTTTCGGTACACCTGATTAGCAA
GAGTGGTCTTGCCCAATCCTCCAGCCCCCACAACCGACACAACCTTGATCCTCTCTTCTC
CATCGCCCAGCAACCTGACGAGCTCGTCTCTCGGACCGTGGACGCCGACAAGGCCCCCCA
ACTCCGCGTAGAGCGCCGGCAGCCGGCGGTCGACCGGCACCACGCCGGCGCCACTAGGGC
TAGCCGCCGCCGCATCGATCTTGTACCTCTTCCGCCGGTGGCCGGCCTCGACGACGCGGG
CCCTGAGCTCCTGGATCTGCTCCGCGATCCCGCAGCGCGACACCATCTCCCTCACCCTGC
CCACGTAGCTGAGGACGAGCCCCACCACACCGCCGCCCCCGCCTCCGGATCGGCGGCGGA
GCTGGCCCATGTACTCGTCGACGCAGTCCTCGATGTCGTAGCTCATCTCCCGCACCTGGT
CCCTCCACTCCCTCGTCTGCGGGTCGAGCGGCGCCGCGGCGTCGGCGTCGGCCAGCCGCT
CGAGGAGCGCGTTCATGCTGCCCAGCTCGTCCCGCAGGAAGGCCACCTC