morexGenes - Barley RNA-seq Database

Contig contig_42487
Source Contig contig_42487
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42487 (8504 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_42487

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58255	1	1046 bp	AK361645	Available	Available	None
MLOC_58253	3	3066 bp	MLOC_58253.2	Available	Available	LOC_Os06g04640.1, FRAME:+3, EVALUE:5e-154, 13106.m00425 protein bromodomain domain containing protein, expressed
MLOC_58254	2	1062 bp	MLOC_58254.1	Available	Available	LOC_Os01g23590.3, FRAME:-1, EVALUE:2e-27, 13101.m02493 protein suppressor of Mek, putative, expressed
CDS Structure of MLOC_58255

CDS Structure of MLOC_58253

CDS Structure of MLOC_58254

Contig Sequence (8504 bp)

>contig_42487 8504 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCGCCGGAGCTACGCGCTCACCCCCCTCCCCCCCAGGTCCTCCACCGTGCGA
GCCTGTGCTTTCCCGCACTCTCTTCCGCGCGACCCCGCCTTCTCCTCGCCCGCTCGCCCC
CGTTCGTGAAGGCGACGACCGCCAGCAGCGGCCCGATTTGAGGGAGGGAGAGAGGAGGTT
CCTCTCAGGTGAGCTTTTCTTTCCCTCTCTCTCAAGCGTGACGCCCCATGCCTCTGGCTA
CTTCCTCGATTTGGACGATTCTAGGGTTTCATGTGTGCCGCGATCTACTAGGATCTCGGA
CGATGGAGATTTTTGTATTATTATTATTTAGCAAACAGTGTTGCTAAATCTCATTCAACA
CTAAAGATTGTAAGCATCCCTAATCTATAGAAGAAAAACATGGCATATAGGTTTTCTGTT
TATCTTGCAGCTGTAATTGGCTTTGCAACTTATTATTATTTATCTTCTCCTGTATTCAGG
CCAAAATTTGAACCAGCCCGAAAAATCTGGAAAAAAGAAATGCTGCACAAAAGCCTCATC
CATCTCCTATGGCAAAATTCTTTTGCTATTTTTTTATAGGGATATTCTGGTCTTTCCACC
CTCTCATTTATGTCATCTAGCAAAGAAACATGATCAATTGTAACGCCTGGCATTTTATCA
GTTGGCAAGGCGCTAAATGGGATATTTGATCAATTGCAGATAAAGATTGGGCAGTTTGGC
CGGGGCAGAGCAAACATGGGGCATTTTATCAATTAGCCCCCGCAACCGCAGCAGCAGTGT
CGCCGCTACTCGCACACGGCCGGCGGAGACGAACCCTTGATGGTGCCGGAGGACGGCGCG
CAACAGGCAGCGGCCGCTGCCGCCGCGGAGCACCCCGCGGTGTCGGAGGTGGACTCGTTC
CGACGCCAGGTCGACGACCTTGCCTCCAAGACCGATGTGGTAACCCCGCCCCCTCCTAGC
CCTGATACTAGTTTCCGTCTTGCCTCAGTACTGGTTTCCAAGAAGGGCTCTGCTGCCAGA
GCAGCTTTGTTCCTAAGAGTGCGCTATTTTGGTGGATTTTGGCTATTGCATGATTAGGTG
TCAGGTCTAGCGGTCTCCTGTTGCGATACCGTGTTCTTTCCCCCAAAGAATCAGGGCAAA
GTTGTCTCAGACTGGAACTCGTGGTATGTGTGTTGTAGCTGGAGAGGAGGGTGAACGAGG
TGGTAGGGTTCTACGACGGCAAGAAGCATGGCAGCGCAGGGCGCAGGGCCATCGGTAGCA
GCAGGTATGCGGCGAATGGTGCAAGGGACAGCAACTGCAAAGGGATGCCCGACCTCATGC
GCCAGCTTGCCGGTATCATTCGCCAGGTGATGATCTTTCTTCAGCTGTGGTTTATCCCAT
GATTCATTGTGTTTGCTGGCTACTCATGATATATTCTTGCATCCTGGAGCATGTTTTAGA
AAGTCAGGCTGGTGCCAGGTTTGTAGTTTGCAGGTCAATTTAGAACATTAGAAGGCTTTT
CGACCCAATCGATCTATTCGACTAGACTTTTTCCATTGCTTGTATATTGCCTGCACATAC
TGCTCATGTTCTTTCCAGAAAGATAGATTTATAGTGGAATCAAAATTTCTACTACAAGTT
TCAAACAGCTCCCAAATTTATGTATGCTTCCATGAACATGGGTAAAACACACAATCTGGT
TCTTTGGGGCTGTGGTCATTTATAGACCATTTTCCACATGTGGTCTTCTGGCGCAGTGAA
TGAAATAAAATAAGCCTAAAATATATTATCTGCAGCTTTTGCTGAATGCGGTCATCTGAA
GTTCTGAACCTAACTTTCTATGGTGTAATACTCAATACAGAGTTTATCGTTCTTTAGGCA
CCTTCCAAGTTTATATTGAGCTACTGCAGTTAAAAACTCAAATGTGTGATCTCTTTGCCC
TATGAAAAGCTTTTTGCTGATCTTTTCTATATTCATTTTCTTCCAGATCACGTCTCATGA
ATGGTCAGCGCCATTTCTGCAACCGGTAGATGTTGTAGGCCTACAACTTGATGACTATTA
CAAGGTAATACTGCATATACAGTTTGTCCTGGAATTTGCTAGAGTTCTGTTCCTGAGGAA
AAGAATTTTAACCACAAGGGATACACTGGTAACTTAAATGTGAATTAGTTCTGGTAGTAC
TGTTTATAGTTTGCATGACCTGATCTTGGCAAGCCATCAGGATCTAAAAACACAAACTGA
CTTTGATTGCATATCATGTTACTCATGATCCACTACAGGTCTTCTTTTTTTCTGGTCTCC
ATTCTGCTTTCAGATGACATGCTTTTGCACTTTCTGAGAAGATTTTCAATGTCAAGGGAA
GAACATAATCCTGTATTTGCTTTGAAATCCAAATACTGTAAAATCCTCCCTTATCTAGTA
TGGAAGACATGGCTGGGTATCTTATTAGCTGTTAATTGGTTTTGTAACTATTTTTTGCCC
TCTTCCATGTACATGAAACTGAAACCCATTGCTTGGAACTCTAAAAATTGTAATCATCCC
TAATCTATAGAAGGAAAACATGGCATATTAGGTTTTCTTTTATCTTACAGCTGTAATTTG
CTTTGCCACTTATCCATGGAGTATTATTTACCTTCTATAATGCACTTCGTATTGATGGAT
CTGTTGAGTTGGTAGCTAACATGTTTTTCCATATTTAGTGTATCAATAAGATGGAGTTGC
TTTGTTGGTTTCTTTACCTGAAGCTTGTTTGTGGTGACTCGTATCTTTGGTTTCTACATT
TTGCAGATTATAACAAAACCTATGGATTTCTCGACCATCCAAAACAAAATGGAAGGGAAG
GATGGTACCAAGTATAAAAGTGTTCGAGAAATATATTCTGATGTTCGATTAATTTTTACC
AATGCAATGACATACAATGATGAACTCCACGATGTTCACATAATGGCCAAGTTATTACTC
GAGAAATTTGAGGAGAAATGGCTCCAGCTTCTCCCTAAAGTCGAGAACGAGGTGGATATT
TGTAGTCTCATATGTTACCATTTTTATTTTGATATAGGTATGTGTTATTTAGCATTTGAC
AACAATAAGTTGGATCCTATTGTTTTAGGAAAGGAAACAACAGATGGAAACAAACGATGC
TCCAACCACAGACACTTCTCCGGAAGATGCTATTGCGCAATTGGCAAAAGATACTGATGA
TGAGGTCGGCCCTCTCATCGACTTCTATTCTTTTTACTGTTGTGTCGGTATTGATTGAAG
CACATATACTGACTTTGACTCATGTTTAGAAAAAAATGGCCGCAGACTTTTATTAACATG
TTTCTGTTATCATTTCGCTTTTTGTCTATTGATGTATCGATGTGAAAACCTTTCTTGGCC
AGCATGAGCATGCTTCTGTATCCTTGTCAAACATATGCCTTGCATATTCACTGCAACCCG
TACTGTGTTCCCTTGTTTTGTTATAGATATTCAAGTACCTTTTATTTCTCGTGTTTCAGC
TGAATGAGATTAATAAGCAGCTGGAGGAGCTCCGGAACATGGTGGTTCAGAGATGCAAGT
ACGTCTTATAGACATTAATCTCGTGCCTATAAATTTGCCGAGCCTAAAAACACAGTACAT
TTACTATTTTTTTCTTGATATTGTAGGAAAATGACAACAGATGAGAAGAGAAAACTCGGT
GCCGGCCTTTGCCACCTGACTCCGGAAGATTTTAGCAAGGCGCTAGAGCTGGTCGCACAA
GATAATCCTGACTTCCAGACTACAGCAGAAGAACTGGACCTTGACATGGATGCTCAGGTA
AAGCTCATCTATTCTAAAACCCTAACCGCACTCCATCTGCCACATTGTTTATACAATGTT
AACCATGCTTCCTGCACCGGTGCAGAGCGAGACGACGCTCTGGAGGCTGAAGTTCTTTGT
GAGGGAAGCGTTGGAGCGACAGGCCAACCCAGCCGCGGCCCCTGGCAAGACCGACGAAAA
CGCGAAGAGGAAGCGCGACATCTACAATGCTCTAGCCAAGACCGCTTCAAAACGGATCAG
GAGATAGGATGTTTCTGTAGAAGTAGCTGTCATGGGACAATTTTCTCTCTTGTGTGTGTA
AGACATGTGTGCCAGCGTATATATGAACATGAATCTGCACTAGGCAGTCACACCTGACCT
GGTCTCATGTGTAGCAATGTTATTGTCACCTATGTTAAATATAGAGCAATGTTGATGCAG
CTCTAAAAAACCATAATCACAAGAATAATTCCTCGAAAAAAGATATACCATTAAACATGA
CAAACTGCTGTTTAGCTATTCTTATTGCAGGAAATTAATGGCACTGCAAAAGATGACATC
CTAATTCTCTAGAAATTCTGGAGAAAAAAAACAGAGGTGGTTGATTGGTTTCAGATCTCG
AGCCTCATGTCTGGTATTTTACTCTGCTTCACTCCATAGGCTAAATTTCCCAACTCATGA
GCTTGCTTCAAGGAAAAACTTTTCTTGAGCTGCACAAAACAAAGAAAGATGTATGCTGAG
CATTCTTGTCTGTGCCATCAAAGTGGTTCTTTTGTATGGTCACCTACCATGGGTAACTAT
CAACTATCAGGCCTCAGTTTCCTCTGCACTTGGCAGATTGTGTCCCTGCAAGATACAGAG
TTCATCATCATCATCATGCCTGAAATATAACGAAACAACTTTAGTATCTTCATTGCGATG
GTAACATACCATACATCGGAGCACGCTGCCGCGTCTCGGAAGCTCAAGGAGAGGGTCATG
CCGGACACAGGATCGCTCCAGGAGATGAGCGTCCCTGCGAGAGAGAGAATTACATAATCA
TGGCGCCACTGAACAGAGGAGAACAAAGAAAATAACAGAGGCACCATTAGAAACAAACTA
AATAAAACCTTCATCCTTTGTTGCGACGAATTTCTGCCTGAGACTCGAATGTTGAAGAAA
GAAGAGAAAGAAACCGAAAGGGGGGAAAGCAGGGGAAGCAAGAGAGGGCTCCTCACCTCG
GTGCCTCCTGTAAATGTCGTCCGGGGTGATGCGATGCAAAAGCATCGCCTCCTTGTCCTC
CGCGTCTATGACCGCCAGGACGGCTTCGTGGGCCGATGCCAATCCCTGCGACACACACAC
ACACGCACGGGAACGAAGAAGGCCATGAGCGACAACCTAGATCAGCGAATTCCCAAATGT
ACCATGAAGGGGCATGCATGATTACCATGTAAAAAAATCTGTTGTGCCACTCCCTCACCC
TTCGTCGTCCCCATATATATATATTGGTTGTAATAACATCTTATATTGTGTTGGAAGGAA
GGAAGGAAGGAAGGAAGCAGTGCGAACAAACCTCGAGGTAGTCGACGGTGACAAGGCCGG
CTCCGTAGTCGTCCCACCCGCCGCCATCGTTCAACCTAAACACCTTGGCGCGCTGCAAAA
GGAATCTCCACAAGATTGATTATTGCTCCCATGGTTGGTTCCTCAGTCCATCAATTCATC
AGTAGTGCTTAATTCCTCCGGAGCACAGGCAAAATAAAAAGATGTTGATTTTCGAGGAGG
AGGGGCCGCCGGCCGGGGAGCTCGCTCGATGGCTTACCGGCGGGGGGGGGAGCTGGGGCG
GGAAGGCGGCGGTCGCCGGCGCCGGCTCCGGCTCCGCGTTCTTCTTGCCGGGCATCGCGG
TGGCCGCCGGCGAGTGGTCAGCGGCGCGCGGATCGCCGAACCCTAGCACACTCTTTCCTG
TTTTGACCTGAGTCCTGCTACGCCCGGAGACAGGGAAGGTGAGTGCCAATTTATTGCGCC
CGGGCTCCAGGTAGTCCTTTAATTTAATTTGATTTGAAAATTCGGAAAAGATATATACAA
AACGTGAAAACTTGTACATGTCCGCGACGGATATATGAAGTTTTCGTTCAGAAACATTAT
GATTTCTAAGCTACACACACAAAAAAAGAAAATGTTTGCCGAACCCTGGTACACTATTTT
TTCTTGTATAATGTATACTGCATTTGGTTCTTTTTTTGTGTGTACACCACATATGAAAAT
ATATTGTTATAAAAATTTTAACTGAGCGTGTCATACATGTATTTTTTATATACACAAATG
TTTTGAACTTATTTTGCATCGTAGAGATATAGTACTCCCTTCGTTCCAAAATAAGTGTCT
TAAGCTTAGTACAATTTTATACTAGCACTAGTACAAAGTTGAGACAGTTATTTTAAAACG
GAAGGAGTATTTTAAATACTGGGCTCTCTGGAGCCCGGACTGCATTGGGCATTTCCAAGG
TGATACTCCGGTATTATGTGCGTGTTCGCGTTTATTAGTCGGGGATAGCACAAAACCAAG
GATGCCGTTCAAATTTTAATAGCAAAAGTAACCTCGATGGAATAATCAGCAGAAACAAAA
ATGAGAATTATTATGCACTGTAAAAGATGTTGTAGTGGTGCTATCTACATCTGTAAATAA
TATGTATTTATTTTTAGAACGGAGGCAAAAGATTTGCCTTTTCAATTAAATAAGGGAGAG
GAAAGTTTAGAGTTTTACAACACGCTCACAAATAATATTCATTTCTTATATTACAGACTG
CAATAAGATATTCACGGCTGGCTTATTCGATACACAAGAACTTCACACAAAATTTACTAC
AAGAATTCCATTTAATTCCCACGGCAACCAGCCTGGGGCCTGGGGCCAGCTCACCAGTTC
GTTTTGTGAAGAAGAATGCATCTATATATTTTCACAACTCATACTCAACCAAAAGCTACA
TCGTACAACTTCACCACATGTCCAGCAAGCCCAGAACAAGATACACAGGGAGTACACCAG
ACGTACGGAGAAAAACTCCAAAACGACAGATGATTGATGCTACCTATAACCGCGGTAATG
AATCGCCGTGACCAAGTGAACAATGAATCGCTGCAATCTGGTTCCTGTCAGCAGGCTGCT
GAAACATCCCTACGAAGCTTTCCGGCAAAATCATGCAAAACTCTCCCGTTTCTATGTTGG
ATTACAGTTTGATGAGAACCGGGACCAGAACGAGCTAAATGTCCCGTAGGATGGGCCATC
CTTTCTTGGCAATCTCATCAATCTTGGAGCTTATCCTCTTCTGGGTCTTCGGAGGGCAGA
GCTCGGCTGCATATGCATTCAGCTTCGCGGCCAGTGTTGATGACAGGAGCTCCTCTTCTG
GCAGGTTCCCGATCAGTTGCACCAGGAAAGGCTTGCGCTTCAGCTCGAATTTCTAGCATT
GAAACCAATTCATGGAAGAGCACACCATACATAAGAGGATTTATTTTTTCAAGAATGTCA
TTTGCATCCCAAGTCTTGCACGGAAGTAAAATGACATAGCTACCTGATGCTCTGGTTCAG
CTGGATAAAATGCCCCCAGTGGTTGGATCTTTGTGGTAATAACACTGCTGCGATCCTTGA
CTTGTTCCCTTTCTTTCATAAGAGCAGCCAATCTAGCCTCGAGGGTTCCATTTGTGAAAA
TGACGGATCTGTGGCCACACAAATGAGTATTTGCTGACAACATGTACCATCATATTGTGC
TATACTACTGCTATGCACAGAGGATCTTGTTTGAGCTAGTGAGGCAAGCGTGTTACACAG
CCGCGTGACATTGTAATCAAGATCAGTTCCTCTAAGCATGCAACCAAGGGGGAAATGTTG
GCAGTATAGTGAGCATGCCATATGCTAAAATACCATGAAAATGTAGCATATGGAAACAGA
TGATCATCACATCCTCAAAGGAGTCAATTTACTGACAGAAAAGAAGTCAGAAAAAAAAGT
CAATCACCTATATTGGTTGCCAACATCCGGTCCTTGTCCGAAGACCTCCCGAGGATCATG
GCTTGCCCAGAACACATCCAAAAGCTGCTTGTACTGAATCTGCCGGGGATCATATTCAAC
CTATAAACGGTTCAAGGGCAAAACAGGAGTCAAAGTCAGTCATGGTAGCTTGGAAATTAC
TCAATCTCTGATTAGCACCTCACAACTTGTAAATTTTTATAATGGGCAGAAACGCAGGAA
GATCACGCGCACAAAGACCAAAACACGCCCAATTTCTTCTAAATAAAACACGCCCAATTG
CTTCAAGCACACGCCACATCAAGCAAATCAGGCATGTTAAGTAGGTCCAAAGCATTCAAT
CCATGTACTAGGTCATAAAACATTCCTTCATCCAATCACTGCTAGTTTTACTTGCACACA
TAAAAAATGTTTTGGTTTAATAACCAAGTACAGAGAACAGGCTATATCACTAGCAATGGC
AGCGACGAAACGAACATTATCAAGGAGCTGGCAGAAGGGAGGGGGGCCGGGAGGAGAGCT
CTGCCGGTAACTACCTTGACGCACTCGGCGTGGTCGGCGAGGTTGCGGTACTCGGGGTTG
GGCTTGGAGCCGCCGGCGTAGCCGACGGAGGTGCGGAGCACGCCGTGGAGGCACCCGAAC
GCCGCCTCGGACCGCCAGAAGCTGCCCAGCGCGAACACCGCGGTGGCCGACGCGCCCCCG
CCGGCGCGGACGGTGAGGCCCGTGCCCCCGGCCCGGACCGCGGG