morexGenes - Barley RNA-seq Database

Contig contig_42446

Source Contig contig_42446

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_42446 (6299 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_42446

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58202	1	1834 bp	MLOC_58202.1	Available	Available	LOC_Os08g09390.1, FRAME:-2, EVALUE:4e-101, 13108.m00991 protein OsFBX264 - F-box domain containing protein
MLOC_58213	7	1563 bp	MLOC_58213.2	Available	Available	LOC_Os08g10604.1, FRAME:-3, EVALUE:0.0, 13108.m01134 protein pectinesterase, putative, expressed

CDS Structure of MLOC_58202

CDS Structure of MLOC_58213

Contig Sequence (6299 bp)

>contig_42446 6299 assembly3_WGSMorex_rbca.fasta
TAGCTACTAGTACATACCCTTAGCCCGGGGTGAACTACTCCCTCTTCGTCACGGAGACCA
CTGGGATGATGGTGATGGCCTCTCGTGATGATTGCCCCCTACGGCAGGGTGCTGGAACCG
GGCTCCGGATAAGTTTTCTTAGGTATGCAGGCTTGCGGCGGTGGAGCAGAAGTTCTAGTT
TATTTCTGAGGGGTTTTGTATTTATATAATTTTGCAGCGTTGCAATCACGCTAAACGGAG
CCACGAGGTGGTCCCAAGCAATTCGGGTACGCCCAGGGGTGGTCGCACCCTCTTGTCTTA
GCACTAACAGGTGGCCCTCCTCCGATGGTTCTTTGCTCCAGTATTTCTTATTTTTTCAGA
AAAAAACATCAAAAAGTTTTGGGCGATTTTGATAACTTTTAATTTTTGCACAAAAACAAC
ACCACGATAATTTTGCCGAAAACAACGTTAGTCCGAGTTAGTTCGAATTAAATTATATAA
AGTGCAGCAAAACCATATAAAATATTGTAAATATAGGTAAATATGGCATGAATACTTCAT
AATGTATCGATACGTTGGAGACATATCATCAGTTCCTTACATCCCCTTGTCTTAGAGGGC
ATGATCTTAATTTTGGAATCATTGTGGTTCTTCATAGTAAAGATAAATTGCAGCAAGTAA
TTGACTCCCAACTGAACTTAATAAATAGAACTATGCTCCGAGACAATGACGCCAGAAAAT
AATCTTGATGACCCACAAGTATAGGGGATCGCAAAAGTCTTAGGGTAGTATTTCACCCAA
ATCATGATTTGACAGAAGGGGAGCCAACAAATATTTATAAGCCTTAGTTGTTGAGTTGTC
AATTCAACCACACCTTAGAGATAACTTCCTTGCATCAATTTATTAGTAGCACAATAATAT
GATAGCAGCGGTGAAACATTAATAGTAGCAATAGTAACAAGTTTGTAAGGCAGCAACAAG
TGCAATAGTAGTTGTTGTAACGGAAATAATAGCAGAAAATCACAGACAAGGAGTAGTGAT
GGGGTTTTCACATGAGATTCAATATGCACCGGTCATAATCTAGAGCGATACAAACTAGCT
CCAATTCATCAATCATATGTAGGCTCCATATATAGTCATACATTCTTGCGATAAAAAAAT
TCATAACATCTTTTGTCGTACCCTCTCATTGCAGCGGGGTCATGATGAAAACTAAGGGTA
ATTAAGGGGTTCCTTTAATAGAGTACCCAGAACAAAGCGTTAACACATACGAAATACATG
AACTCCTCAAATTACACTCATCCCCGTAGAGTATCCCAACTGTTGTCACTTTGTGGTCTT
GGGTTTAGAACCATAGTAGGTGCATACATAAGATTGAGAACTCAAATGTATATCCATGAA
AACATAATAGGTTTAAATCTAAAATCATGGCACTCGGGTCCTAGTCACAACCATTAAGCA
TAGAAAAGTCATAGAAACATCAATCTCAGAACGTAGTGGATACTAGGGATCAAGCCCTAA
CAAATGTAACAACGATTACATAAGAAATCTCATCCAAACCACATCTATCTCCAATATGCC
TACAATGGACTACTCACACATGTATGTGATCATCATGAAATTGTTGATGGAGAAGGGTTG
GTGACGACGATGGTGACGAATCCTTCTCCGTGAAGCCAGAAATGGGCTCTAGATTAGGGC
TCTCATGCAAAGAACGGGAGGTGGCGAAGACTATTACTGTAAAACGTGATGAAACTTTTC
TATGATATTTTTCAAGGCGGATGTGAATTTAAAGTGTCAGAATCAGGCCAAGGCTGTGGT
CAAGGGGGCACATGGACATGTGGCGTGACCTAGGGGTGATCGCGCCCCTGTCCATGTGGC
CCCATGGTGGCTCCTCTACGGTACTTCTTCGTTCGAGTATTTTTATATATTCTTAAATCT
CCAAAAAGATCCATATAATGTCGAACACTTTTATTTCTGCACAGAAACAACATCATGGCA
GTTCTGCTTAATACAACATTGGTCCTGATTAGTTTCACTCAAACCATGCAAATTAGAGGC
CAAAACAAGAGCAAAAATATTTGAAAACGTAGATATGTTGGAGAAGTATCAGAGGGATTT
GGGGTCGGTGATGGCAACACTATGGGTTGGGGACGACAAAGGAGCTACGGTTGCGAAAGA
GCTAGGGAAGGGGCGGCGCAAACGTGGAAGAAGAGAGAAAGGAAAAGGCTGGTCAGGCTA
GGTTGGGGATGATTTAGGATGGGTCCGGCCCATCGGATCCGACGTGATGGACGCGTCTCG
GTGTCCTCATATCCGGTCCACATATGAGTTGGGTTTGAGGGCTGCCGAACAACCCCGAAT
GTTTGGTCTAGCTTTGGGGGCTCCAGTTGGGTGGCAATTTTCGGTCTGGACGATGATCGG
GCTATCCATCCGAACGTTTGGGGAGGGCTTGAGGAGTCCAGTTGTATATGCTCTGCCTTT
TCTTTTCCCCTTGTCTGAATTTGTGCTTTGTTTCTTGGGTTTAGAATTCACAATGTTAAT
TAACTGAATATAAGTTCAGCTAGGGCAAATGATCACCGAACATAAAAATATACGAAGTTC
CACATGATAAAATTCGACTATTTCCCTCATATTTCTTTCTTGCATGTATGCTGCGTATTA
ATGATTCCATTAAATGAAAAGAAAAATTGACTTGTAAAGTACTCCCTTTATACCAAAATA
ATTGTAGTTGGAGAGAACTCGTATTAATGATCCCGCTAAACGAAAAGAAAAATTGACTTG
AAAAGTACTCCCTTTGACGAACTAGTCCTAGTTCTTCGCGACTACAATTATTTTGATACG
GAGGGAGTACGTGTAATTTGATTGTGTGGCCTTGTATAAGGGAATGGAGGGAGTGACTCA
AAATGTCTTGTCTAATAGCAAAACGATACTGTATGGCTAATATACTTATAAACATGTAAA
AAATATGAAATATGAGGTTACCTAACAAAGTTCCATCGAAATGCATGACCATTTGCGCCG
TGTGTATTCTGTGTAGGATAAAAGATTGTCATGTTTTTCTTTATAAAATGTACTTTTAGA
ATGTCCCACTCCCATAAGTTGTTCTTATATTTGTTAAAACTTCAGCGCACAAGTAATAAG
CTGAGTAAAGGTTCAAACAATTAACGTGAGAATACAGCTGCGTACTACTAGACACTTGAA
AGCAGTCCGTCCAACCATTTACACAAACTAGTAAAACACACACTACGAGGCAGATGATTC
AAAAGCACCATCGGCTTGTTTCTACATCAAAAGCCTTACTGCAGGGATATACACAAAATA
TTCAGGATCCAAAACACCAAGACAGTGACTTGAACTACTGAACATGGCACAGCTGCATCT
GTTACAGCTCCCAGTAGTATCTGGGATCGTCCATGGAGTAGGTCGGCACAGGCGAGTCAG
GGGACGACGGGAGCGAGTAGTCCTCCCAGTAGTTCTCACCGTAGTCATCATTGTCCATCG
CTACATTGTCCATCGCTGCCCCGTTGCGGAGAGCCTGAGCCTCCAATTCATAGAGATCAG
GTAGCTCGGTCACTTCACCTTCGTCCTCTTCAATGATATCAAGTTCTGGGCAATGAACAT
GAGGCCATCCTCCTGGCAGCCGGACATGTTTGATTTTAGCACAGCGAGCTTGGAGTTCAG
CATTAACTTGGAGGTGACCGCATTCTCTAAGGTCGAGGAACTCGAGGGGGCAGCCTTCAA
GGATGGCGTACACCCCTTTTTTAGTCAGGCCGTAGCCTGCCATCTGAAGGAGCCGCAGCT
CGTGCAAGCTCTCTGCTATGGCAAAGGCCTCCTCATTGTGTCTCGCCTCCCAGACCTCAT
AAGGCTCCTCCTCCTCCTCCTCTTCCTCCTCGTCGCTTTGCTGTTGTTCCATCCTTATCT
CATGCTCTATTGAATCTGAATCGTACCACGGCAAACAGACTCTTAGACGCTTCAGCCCTG
GGCGTGCTGCACCAATCCCCTTGAAAAAGTCCCATGTCAGCTTCTGACCAGAGTACTCTA
TCTCTTCTAGCATTGGACATTTAGCTGCAAGCTTAATTACTACGTCCTCATCATCCCAAA
AGTAACAGGCGCCGATGAGCCGAATGCTCTTCAATGAGTTGCATCTGCAGAGACAAGTAT
GAAAGTAGACAGGATATCACATGAACCGAGCAAAATCAGACAAGTACAGTAAGACTACAT
AACAAGTTTAAACAGTAAACATATTTTCCCCTTAAAGGGGAGTGGTTTGGAGACATCTAC
CGTATGATAAATATCAAATGAGTTTCACATTTGGCAAAAGTGACCTGTCGTAAATAACAT
ATAACGATGTACCATAAATATCTAACAAGAGTCAGTACCTCAAGACAAATTATTTAGCCA
TAAGCGACCTGTCCTAAATATGTTTTCCCTAATTGTTGACAAAATATAACCATACAGAAA
GCATTCGGTCTGTCCTTTGAACTCCATGAATACAGAGTAAGAGACCAAATGCTGAAATTC
AAGAATGGGAATTTAGGACACAAAGAACAAGTACCTGCTTGCAATGTAATTCAGGAGTTC
ACTAGCGACAAACTTCTGAACCAAGAACGATTCCATCCGTCCATCAGAGCGGTCTATAGC
CACCTTTGCCATTTGGCACATGACGTTTTCCGGCTTGGAAAAAACCAACTTGTGGCGTGT
CATGTCCACGAAACGCCACAGCTCAGGGGACTTGGCTGCCACCAACCATGAGTGGCACAC
AAGTCCGGCGCCCATCAGGATCTCAATGGTCCCAAGCTTCATGAAGATTGCAGAAAGCGC
ATCGAGTGGGAGCTCAGACCAATCCCTGACATCAGACACAGGCAAGGGTTTTGGCTCCAC
CTTCATCGTGCAAGGTAGCTCCTAAAAAACAAGGTGTCATTGCAGAGATCACAAGGATGC
CTAACGTGAGCTTGAAATTTGCAAGATGAGACAGCTTTAACACAAGATAGACAAGGTTAA
GATCCACAAGGAAACCTATGGCCGATCAAATGGCTTAGACTGAAGCAACAATCAGATAAT
TATCTGAGTACGAAATGCTATTTAAAAAATTTATTTGGGGAGGGTGTAGCGAAGCAAAGC
TCGGCTTGTTTAGGGGGCAAGAAAGTTCTGCAGAACAACCACCCAATTTGGTGCCAAAAG
CAGTGCCTCAAGGTGAACTCTTATTTAAGCTTTGCAATCGATGATAAGCCAATCAGACCA
AGTTAGCAAATCAATCTACCATTATCATCTCAGAATCCACCTAATTATGATTTACCCAAA
CATCCATCAAACCAGTATACGCACCACTCTGTTCTTGTGGGGGTAGGCCTGAAACCCCTG
CTTCGCCATTTCGGTCAGCAGGTCGTCGCCGGCCATGGCCTCCCGCTTCGCCCTCTTGGA
TCTGTCGCCCCTCGCCCTGCAAAGCACCGACCCGTCAGCCGCCGAAACCAAAGGGCAAAG
GCCGTTCAAGCCAAACGGAGATCTAAGGGCTGCGGGGACAAACTCGGAGACTAGCTCCTG
AACGGCCTCCTCGTCGATCTCCCCGTTGGGCGGGGTAGCCTTCCTCGTGATGCGCCTGAT
ATCGGCGACGGGCAGGAACGCGCCCCGCTCCTCCCTGCTGCCGCCGGCCGTGGGGCTGCC
GCTAATGCGGCGCCCCCCGTCGCCGGAGGGGCTCGACATGCCCTCACGCCGCCTCCGCAA
GGGAACTATAGGTCAACCAGATCGGAACCCCAAACCCTTGGAACGAGAAGCGAGCGTAGG
TGATACCTTGGGAGTCGAGAGACGGAGAGCAGTTTGAAACTAGAACTAGAAGTTGGCGTT
CGCCCGAGGGAAGAGCGAGGTGGCCAAAAGGAGCGGAGGCGGCCCATACCTGACCAAACG
GGCCGGCCCGGCAGAATCGTGTCTGGCACGGCACGGCACGCCTAGGCCTGATTACTAAAC
GGATGTGTCATGCCGGTCCGCGTGTCAGGCTATCAGGCCCAAGCACGGCACGCTGCCTAA
ACGAGCCGGCCCGCGGTACGCTAGGCCCACGGAACGCCGGCCGATTTGATTGAAAAAAAA
ACGTCTGTTCCCGCCCCTCTCCCTCCCAGATCCCGTCCAGATCCCGCCCTTTCCCCGTTT
CCCGCCCGGAGCCCCCGCTCCCACCGTCCCCACAGTCCCACGTGTCGTGCCGCACGCCCC
GACGCCCGCACGGCCGCTCCCCCTGCTCCCCCATCGCTCCCCAATCGTGCTGGGCCGTGC
CAGCACGCCAGCTCGGGGTGGCAGCCCGAGCAACGCCCCCCGCACCCCACCACGCGCCA