morexGenes - Barley RNA-seq Database

Contig contig_42410
Source Contig contig_42410
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42410 (7711 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42410

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58165	2	1826 bp	AK363683	Available	Available	None
MLOC_58166	3	1752 bp	MLOC_58166.2	Available	Available	LOC_Os09g20430.1, FRAME:-3, EVALUE:3e-138, 13109.m01936 protein SCO1 protein homolog, mitochondrial precursor, putative, expressed
CDS Structure of MLOC_58165

CDS Structure of MLOC_58166

Contig Sequence (7711 bp)

>contig_42410 7711 assembly3_WGSMorex_rbca.fasta
AAGGGATTTAGAAACCAGTCTCTTCAAGCAAGGATGAGTGACGACGGCGGCATCGTCGTG
GTGGACCTGTGTCCTCGGGCTCCGCCGTTGCGACGGTGTTTGCTCCAGCGTCGGCGCGGA
GCTTGGGAGGTAGTCCAGGAGCGGATGTAGATTGTGGTCTGCATCAACGACACCTGGAAG
ACGGAACGTGTGTTGGGTTTGTGGTCCGTGGATGGCAGGTATGGTTTCCTACTTCGGCGT
CTTAGTCGTGATGGGGTGTCAGATCTGGAGTTTGATGGCGTGTCCGGGGTGTTGCCCTAG
TCTAATTCATTCAACGGCAAGGGCTTCACTTTTGATGAGCCACCTTGAAGGTCCGTAAAG
TTGCATATCAGCGTGGAGCCGCGTCGAGCTCGGGTGAGAAGGTTATTCGATGGCTCCTGT
GGTGGTGGCGGAGGCAGGTGACGGATGTTGATGTCAGACTCAGAGATGTTTTTCTATCTT
TTCAGTTTTGCCATGTCGATTTTTATATGACTTGTAGTTTGATTTTTATGATATGAATGA
GGCACATATTACCAAGCAAAAAAAAAGACTGAATCGACATATCATTTTAAGATTTATGAA
GTCATCATAGGTGTCTCATCGTCGACGAAAATCTTTCCTCTCACTGAATACACATCACCA
AAATTATAAAATAAATCCAAAAATAATGCAAGCACCAGAACTTTAAACCCTAGTAAGCTA
AAAGTATCATTGTTTCTCTAACCATTCAATTAGAGGTTGGTTCGTCATGACAATTTGTTT
AATTGCCCTCGAGGGTGTGGGGTAAGATCTCGGGGTGTTCGTCAGGATCCGGCTCCTGAC
GAAAGTTCGCCAGATAGCATTTCCCCTGAATATTTTGCAAACGTTTAGGTGACACGGGCA
GGGCAAGAACACAAGTGGAATTCTCATGAAACCAAGACAGAAGCTGCATGGCAGCAATAT
TCCGTGTCGGGCTGCTGCACTGCCCCTGGCCAGTCAATCAGTCCTACGTACGTACTAGAT
TAAGCAGCAGAAATGCAGAAACAACAGAGACGCATCAGCATCAGAGACTGGAAAGGAGGA
GATTGAAAACGAGACATCAATGAAAAAGAGAGAGAGAGAAATGAGACAGAGTGGCTAAAC
AAACAAATCTGCAGTGGTGCCAAGTGCCAACAAAGGCAAAGCCGAGCCCTGAAAGCTGCC
TTCCCATCCATCCATCCATCCGCGCGCTTTCTTTTCTTTTAAAGCGCTCCCTCCTCCTCC
TCCCCTTCCCCTAAAGCTACCGGCCGGCCGCCCGCTGCTGTGCTGCGTGCGGGAGCAATG
AAGAGGATCAAGGCGGCGCGCGGGGGAGCAGCGGCGACGGCGCCGACCGACCTGCTCGTC
TGCTTCCCCGGGCGGCAGCACCTGGCGCTGATGCCCAAGTCGATGTGCAGCCCGTCCAGG
GCGACCCTGGACAAGGCGGTGGCCGCGCGCCGGAGACAGCTGCAGCTCCCGGCCGCGCCC
TCCACGCGGCACGGGGGAGGAGGGCGCGGTAGCGCTGGTAGCCCGCTGTTCCGCGGCTCT
AAGTCTAAGGCGAAGCAGGCCGTCGAGGACGACGAGCCGCAGTCGCCCAAGGTGACTTGC
GCCGGGCAGATCAAGGTCGCCCGGCCAAAGAAGCCTAGGCCGGTGGTGGAGAAGAACGGT
AAGGGCGTCGACGGCGGCACTGCTGCGGGGAGGTGGGTCACCGTCGCGGAGGAGATCGAG
CGGCTTCAGGGGCGGAGGAAGAAGGCGAGCTGGCTAGAGGCCGTCGGGATCAGGAGGGAC
GCGCTGCCCTTCCTCGGCGGCGCGCTCTGGAGCCTTCGGCACAAGGTGAGGTGCTTCGGG
TCGTCGCTCCCCGCCGCGGTGGACTCGTTGGCGGACGACGACGACGACGACGATGCGGGG
GAGCACGAACGCGAATCCTCCGCCGTCGGAGGCACAGGCAGCGCCGCCGCGAGCGTCTTC
TCCAAGTGGCTCATGGTGTTGGAAAGGAGCCACGACGAACCCCACGAGCAAGACGCCGGA
GACGACAATGACGACGACGGGCTAGATCAAGAAGTCGGGCGGCCGAGCAATGAGGCGGGA
GACGACTGCTCCAAAGCGCCGTCCGTGCCGCCGCCGCCGAACGCGCTGCTCCTAATGCGG
TGCCGGTCGGCGCCGGCGAAGGGCCTGGCGAGGAAAGGAGCAGAAGCGGGCAGCGAGGAG
GCCACGCGGGAGAAGGAGGGCGTGGAGGAGAAGAGGGACGAGCTGGTGTTCATGAGAACG
GCGCCGGACTTCTTGAAGCTGTCCATCGACATCGCCAAGGAGACGTGGGTCGTCGGCGGC
GTGGACCCCCTCGCGCGCAGCCGGAGCTGGAAGAGGTGACCTGACCTGACCTCTGGTCGC
GGTAGGTAGCCGTTGTACAGAGCTCTACATGTTCGTACGTACTAATACCTTTCTTGTGCT
TCGTCGGTTCCAATGTTTATTACTATTCGCTTTGCAAAATAGTATAAATTGGAGGAGCTA
CAGAAAATGTTGTACGTACGTAGAATGTTTCTCCCCGATTCAATGTCGACACGATCGTGA
GAGAATCTGCGATTGATGCACGCACACAAGTGACGCGGTGATGAAAGGGACATGGCTTGT
TGCTCTAGGCCCCGCGCATTGGAATGCTAACCAATCCAGGCACCTAGTGATCTGCACACT
GCACGCATCACAAGCAACCAAATGAAACAGAAAATCCTGTTCTCCACCAACGAGCATGCA
GCAGAAATCAGAATTACCGAATGTGAAGGAACGAAAGGTCGTCCGAAGCTGCAGACTGAG
AACCTGATTGTCCTGCATCATCAGAATTACTAGTGAGGTATATAGCCGGGTAAAACACCG
CGGCCTCGGCATGGCAACCTGCTACGGTTACATCACCATCACAAATTCACAAGATCTCAC
CAAATAATCAACATATGATAACGGATGGTCTCTCGGTCTACAACCCAAAAGTTTACACCA
AACGCACGGCCACAGGTTAATTAATCCCACACCGAAGGGTGGCTAAAGATGAAAAGCGTG
GCATATCCGCATATAGCATAGCAAAAGTAGCGTAAAGAAATGAGTGTGCCGAACTGCTCT
GCGGCAATCGTAATGGCGGCAGGTGGAGTATGTCCAGCTGTGGACAGACACGGCATATAG
ATATCGAGTACCAGCAAAAGGGAAACGGCAGAGAAAGCTATGCCCTACTTCTAGCCCTGG
TGAAGAACCTATAAACCCTTGCCTTTGAAAAGCTAAATTGGTCACAGATCGGAGTGCTTG
TGCTACATATCACAGATCGGTGAACCTATACAACTTGCCTTTGAAAGAGATTTGTTTCTC
TGAAGATATTTTCACATGACAGAACACGGGCAGTGCTGCAAAGTTTCTTGTTCACCTGTT
CATCCAAACGGCATTAATGAGTTCCTGGGTCCGTGCTACATGTAGTTTCAGCACATCAAG
TTAGATGAAGACACGATAGTTTGAAAATCACTCAGGCAGTGCCAAACTGCAGGTGGTTTG
TAACTTCGTAAAAACACTCGTCGCGTGAGGCACTCTACACTTCTGCTCAAGTCTAGTTGT
ACAGCAAAGATCGAAGATAGGAATAGAATCCTGAATCACTTGAAGGCAGGGCTGAATGAA
GGGTTCGCCATGTCACCGGCAAGGCTGCACATGGGTAGGGGGGTGACCTTCGGAGCAGAC
ATTGGATACTACCGAAACCCGAAGAATTAGGTCCTGGAAAATTTGGTGTAGCAAAATTGT
GTTAGCAGCATTACTTAAACTTATGCATCAAACTCTTTCATGCACACACAATTTTTAATT
TTTTTTGCAGAATAGACTGTTATGTATCTACACTACAGCACAGTATGCATTTTAGATGAA
AAATCAGAAAGATTGTATGGAAAATCTGCCCTGTGTTTGATCAAAGGTAAGTCTTGATCA
AAATAACAAGATTAAATGAAAGTAATGTGAAAAAACAACACGCTGCCAACAAAAATTGGA
TGACACTGACATATTATATTTTCTTCAGCTGGCAGCAGGATCTAAAACCTAGAAGTAGGA
ATTACACAAGTAATTTGTGGTAAAAATATACTCCTATATAACAAGCACTTCTTTAGAAGT
ATTACCAATTAACCACCAGAAGATAAATTCTTTCACCATCACATCTGCCAAGCTACCTAA
GATTAAGAAAGGTTAAAAATATGTTAGTACACAGCTACGTGCTACTTCCAGAAAGGAAAA
AAGTATGTAAATACACAAAAATACAGGTATGCTTTAATATCTCGATTATAATTAGTTGAA
GCAAATAAAACCAAGAGGTATACCACAGGCAACATACTAGACTACTTTGCTGCTGAATTA
GATGCCTTCTGGATCTCCGTTGTTACCGCCTCAGCAAGGTCTGATGCCTTATACTCAGCT
CCAAAGCATCTTACTGTCTCCAGGCATGGATCTAGCAAGTACCTGTAATTCAGACAGTCA
AGTTCTTGAATATTTATCGAAAAAGGAAGTTATATGAAGACTCTCATTTGCTCTTACATG
TTATGAGAACTTTCTACAATATAATCCTGACCAACTTCACCAACTTTTTTAAAGAAAATG
CGGTATTCTTGTGCCATCTGTCTTATTGCATCGACTGAGCCTGTTAATCCTACTATTCTT
GGGTCAAATTCTGCAGTTCAAATGAGACAAATCATCACTTCCAAATATAGTGCAAAACTG
AAGGTTCCAATGAAATGGAACAGGCAGATAGGCTTACCACTAAGATATGCCTTAAGGTGA
GCAGGTGAATCACGTTGAGGATCAAGTGTGACGAAGAGTGGTTTAATCTTGATATCATAC
TTTGACTCTATGAAAAATAAAGTTTCGTAAGAGACATGAAGATAACAAACCAATAAGCAC
AATATAGCACACAGAAAGTCAATGCTTTAAATTGTGGATTGTCAGCAATTTTAAGCTCAG
CAGACAATTAAGTAGGAGTAGTTCAGACTGGAGCACGGCTGAGATAAGAAAGGATTAAAT
AAAAACATGAAATAGCTTCGACAACATAATTGTTACAAAAAACTTAATAATATGTTATTA
CAACCAATGTACTCATATAAGATGTTATTACAACCAATGTACTCATATAAGATGTTATTA
CAACCAATATACTCATATATTGGTTGTAATAGCATCTTAATTATGTGTCGGAGGGAGTAT
ATATCACTGGGAATTAGCATAAAGTGTTTTAACAAAATTGGATGCTTTTAGCCAAATGTA
ATTAACAAAACATGCATTTGTGCCCTCATAGACCAAAATAATCATATGCAGTATGCATAA
TAAGGGTGTTAACTGCTACAATCTGTACAAGAAGAGCAGAGAGATAATGATATGATAAAA
CAATAACAATAGTATATTCAGGATGTGGTATATAGCAACATACCTAACAGCTTAACTACA
TCAGCGATCTTCTGAACTTCTTTTGGCCCCACGTCTGGGGATGATGTGTAGCCAAAATAC
ATCAGCGTCCAATTCCCTCGAAGCTTTGATTCAGTCACCACATTGTTTTCCGTATCATAG
AGCTTAAATGGTCCTCCGATTGCAGGTCTGTTGGTAGTGCACCTTTTGGTAATACCGGAC
TGTTCTGCTTGTTTACCTGGAAACACCATGATATGAGATTATACAGAAAAAATAAACTCA
ATAAGACACAATAAAAGGGTTAATGAAAACTGTTTTTCGTTCAAGCTAAGCTACAATATA
CAGCTGAAAAGTAATAATGAAAACTAGGTCTCATTGAAATTAAGGAACTCTGGTATTGTA
ATATCAAGATTTTTTTGAAAAGCAACACTGACTATAAGCTTTGAACTGGCTAAAAAAATT
AATACATCAAAATGTATTACTTCAGAAATAACAAGAAACATCACTTCTGAAGAATTTTTA
AGTACCTAAGGGAACCGCACGCTTCTCATCATTATAGTGAACATAAGTGCCTAGTCCAGC
AAAGGCTAGAATGGCAGATGGCTGCAAAACCGACATTCACATATACATAAGAATATTGAT
CCAACAGATCATGTTAGGCCAAATCACAGTCCACATGTACAATAAGAAAAGTATTGAAGT
TCACCAATAAGCCATGATAACAGTTAGCAATACCCTAAAAAGTACGATAAATCGTAGTAA
GGGAAAACTGATAAAAGAGGAAGATTGGGCAGGCCAGAAAAGCAACATACGACAATGTAA
TATATTAGTGGCTGAGAATTTGACTCGTTCTCTTCAGCAAACTGTCTCATCGGTTTATCA
TACTTGGAGCTTCCTCCGGTAGAATAACCTCGAGCCTGGTAACCCCTCACCGGAAATATC
CTGCAGAACCAAATTCTAAGAATTACAAGAACCACGGAGTTAAACAAACAGAAAGTGCCT
AGGTTGAACAACATACATGCAAACAGGCTTGTGAGAATATCCACACGTAGGTAGCAATCA
GATCTTTCAGGAATTAAATTAAAGCTTAGAGTAATAAAATGACGAGTAATGGCAGTCAAT
CCGAGGTCTATCATCCATCAGGGGCAGGGTAATGATAATCAAATGAAATTCGCCAAGGTA
TAGCTTCAATATTTCATTCATACCATCATGTAGGCACTTATGCCAGTCAGAGCCATCAAC
GACAGAGCATGTAAGTAAAGCAACTAGCAATGTTAAACAGCATTGCAGCGAAACTGAACA
GCAGGACATCAAAAGCTATTTTAAGCAATCACTAATTACATACACATACAAAATGCAGCA
CCTGAATGAAGAGCACAGACTGCATACACAGTGAGATATAAAGCCTGCAGGGCACACACA
ATTGCGGTGATTCACTAACCATACTTGACAGAAATTCCCCAATTTACTCCCAACTCCGAC
GAGTCTACACAGCGATGTTGCAGGCCCGAATCCTCCGCGTTCCTACAACGTACAGACGGC
TCGCGTTCTTCCCCAGGCAGAGCAGGCCTAACCAACAACCGAAACGAGGACCGGACCTGC
CGAACTAAGGGCGCCACCGCGGAAACGCCCGATGAGGCAACAGCACAAACAGGTAGCGCG
CGCAGGACAGGAGCATCACGCGGAAAAAATGACCGAGACACGAGGTGAGCGAGCCGCACC
TGGTCTGCCACGGCGGGGGCACTCCGGCCGCGCGGGCAGCGCCGAGGCGGCGTACCAGCG
AGAGCCTGAGGAGGCGCGCGGGCAGCATGGCGGTGGCCGGGGAGGAGGCTCTCCGGAGCG
AGGCGGGGTCGGGGGCGCCGGGGGGGATGGAGTGGAACCGTGGGAGGGGAGGAATTGGAA
TTTGTTTGGAGGTTTTTGGGGGGTCTCGGCTCGGTCGGGCGTGTTCGACTTCTTCTGGTC
CAAGAAAGCAGGTATGATCTTCGTGCAGCCCAAGATATCATTTTACTTTGTGGGCTGGTC
GGTTCATTTTCACAGTCCCCTCGTCCTTCTTCTTATACCTTAACTAGTTAAATACCCGTG
CGTTGTCACGTGACATAAAATATGACGTGAAACCATAACTCGATAGAATGATAGGATGGA
CTTGCGTATTTTAGATCAGTGCTTTTTATGGGCTACAATCCAACACCGGAACAATGTCAA
AGATAATTCAAGAGCGTATGTATATTATTGTTGTTCTATTTGTGTTACCTGTTATTTAAT
TCAACAAAACAAAATCTATAATTGAATGGTA