Contig Data
morexGenes
Links



Map Locations of contig_42390 (3279 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_42390

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_58146 1 1214 bp MLOC_58146.1 Available Available LOC_Os04g46310.1, FRAME:-3, EVALUE:4e-134, 13104.m04656 protein HEAT repeat family protein, putative, expressed





CDS Structure of MLOC_58146






Contig Sequence (3279 bp)

>contig_42390 3279 assembly3_WGSMorex_rbca.fasta
TAGACATTCTTTAGAGTATAGATTCATTCATTTTGCTCCGTATGTAGACACCTAGTAAAA
NNNNNNNNNNNNNNTATATTTAGGTACGGAGGGAGTATCTGATAGAAATGCATAAAACAA
TATGAGTTCTAACTGCAGCAGCCAGAGCTAAAATAGGAATAATAACAACAGAAAAGCAAC
AAAGACACAATTTCGACCAAATGAAATACCTGGATAGAATTAGCAGCTTCCTCAGCTTCA
AGCTCAAATCTCAACTCTGTATCTTGTAGCTTAAGTAGAATAAACTGCAACGCCAAATGT
AGTATAGGAAGTAAAACTTGTTTCTGATGCACCTTGATTTCTTGTAGTAGCTTACAGAGA
CAAGGAAACCATAATTTATAGGAATATTGGCCCGTAATATTGACTGCCAAACCATACTCC
CACTCTTGTGACATGGCACTCAAGGATAGGACACAATGACTCTTCTGGTGTTTCGAAAGA
GAGTGTGAACCCCGCTCAATCAACGTGAGCAATAGATACATGATCACGGTACTCAAACTA
TTTTCTCCTAGGGTCCTCAAAAGGTACATCATGAGGGTCAGGCGCCTATGTTCCGCAACA
TCAGTCAAAGATTTAATGAATATCTGCAGAAAGAAAATATGCATGATCCACTAAATATTG
TTATATTCACGGGAAAATATACAAGCCAACAGAGAACATCAAAGAAAAATAGAGAACCTG
AAGAAGCTTTTCTATACTTGTGGTCTTTGATAGCCAACATGGCACTAGTACAGATAATAA
ATCCTCCATAACATGTTGTGAGTGGCTATCCTCCTTCAAAATTGAAATGCAGAAAAAGGG
TTAAGTGTGTACAGGATAATGCAAAGAAATATAAAACAACATTAACTTTCAGAAGCTTTC
AAAAAAATAAGCAAGTATAGAGAATATGTTTGATTCACTTCAAAAAAACAAACAACCTAT
GCTAACATTTAGGGTCTCTTTTGATTCACAAGATTCCAAACATATGATTGCAATGTGATG
CCCACTTGAATCTTACAGAGTTAAATTTGCAGAAGGTTTGTTTCGTTGCACTAACAAAAA
CAATGTATTCTTTGAGGTTTGAGTCATTGGAAGTTTTCCTACGAAATGTAGTGCAATGGA
CTCCTTGAAAGTCCTCCTACAAGATACTCCCTCAGTTCCTAAATAAGTCTTTTAGAGATT
CCACGAGGGACTACATACGGCACAAAATGAATGAATTTACACTCTAAAGTATGTCTATGT
ACATCCGTATGTAGTCCGTAGTGAAACTTTTAAAAAGACTTACATTTGGGAACGGAGAGA
GTACAATCCTACAAACCAAATAATACCCGTGGGGAAAATTCCTTGAAGCGGAGATGCTTA
CTAGTACGATTGGTTAGCAAAAATTAAGGTGTACCCCTTCCATCCCAAAATAAGTGTCTC
AACTTTGTACTAAGTACAAAGTTGTACTCCCTCCGTCACAGTTTAGAAGGTTTGCACTTG
TACCTAGATTGGTTATCAAAATAAGTGTCGCGGATTTTGTACTACTAGTACAAATTTTGT
ACTAGATCATCGACACTTATTTTGGGATGGAGGGAGTATTGTTTAACATAAAAATTATAT
CATTAGAAAATAGAACATCTAAAGTTTCTAATGTTATATTTTTTGTTATATATGAATCTC
ATTAAGTTGGTCAAATTGACGACCTAGGTATATGTGCCGGACTTGTAAACTGAGACGGAG
GGAGTACTAATATTGAGACACTTATTTTGGTACGGATGGAGAACAAACTAAATCAATGAT
TCAAGAAGGTCCGTGGATAGCAAACTGCACTAGGATCAGATTGCCCCTGGAAAATTGAAC
AAACCTGTTTCACTGCATCCCCAATAGCAACAAACAGATCAATAATATTTTCTGAAACCA
GTTGCGGGAATGCCTTTGCTAAGGATGCAATCAAGGACAATCCATGATTACGAGTTCCCA
CATCCTCCGTGGACCTTATGAACTTGATAAGGAGGTTTACATTTCTTTTGTTGAGCAGAC
CATCCTACAGAAACACAAATTTTCATGAAATTCAAAAAAAAAAAAAAAACAGAAGTCAAG
TTTTTACAACATAGCAAGAGTAAGAGGTGATAAATCAGTCTACTGGATTACTTGGTGGCC
CGATTGCAGCGTATCGATGATATCTTTGAGTGTCAACAGTACCAACTCCTGGGTTTCTTT
TACAAAACTGGGTACATCAAGAGTTTCAGAAGAGCCTTTGTCATATTGACACACTATCCC
TGAAATCCATTGATCGGAAAGAAGCTTTGATAGAATCTGGCAAAGTGGTTGGAGTAAACA
TAGCCTGCATGAAAAATGACAGCATATTAGAACTGCATATCAGAACTATAGAACATAGGA
TTTTTGTAAAAATTAAGAAGAGAACTATAGAACATAAGATTAAAATTTAAGTGTTATAGT
ACCAGACCTTTGATTCACATTCTTCATAAGAAAAAGAATATCCAGAAGACAAACGAGAAT
AGAAGACACAGGGTGTTCTCCAAAATACTCTTCAAAATGGTTATCACTGTTAAGATTCTC
TGATCTCTTTATTCTCTTTGAATTTTCTCTCTTATCACCTTCCGCTACAACCAATTCAAT
AAATTTCACAAAAGTAGACGCATGAACCTGTCATGAGTAGAATTAGAAATCAGCTAAAAA
TGATTAAAAGCGATACAACAAATGTACAAACACCATACACGAATATACATGCAAACACTT
GGGAGAACTGTTAACAATTATTAGCAACTCTGAAAAGAATCCATTCAGGTGTACATAGTT
ACAAGCCTATGCTCGTCTTAACAAAAGGAAACAGAAGTACCAACATTTGTAATGGCAGTG
CCAACTGCTGTGTTCAAGCAACCAGATTAAAAATACATTTAACACCGGATTTCAGAGCAT
TAGATAGATCTTTTTCGTACATTAATGGGTGTGATGGACCTCTGACACACTAATTTTGCT
TGACCAAAAAAAGTAAATATGAATGAAATAAATAGAATGCAGGATATGGATACAAACATT
AATCCGTAGTAGAGCATCTCGTGTTGCATTTCGAATTTCCAAATTCTCAGCTCGAAACAG
AGAAATAAGTAGCCCAAATACTTTATCCTGCAAAAGTGAGAGATCAATACATTCTGTTAG
GAATAAGCAACTTGTANNNNNNNNNNNNNNNNGGCCGATATATATACATGTACAGGTTAT
GGACTATATGCAGGAAAACCCCTTATATATTGGGATAAA