morexGenes - Barley RNA-seq Database

Contig contig_42352
Source Contig contig_42352
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42352 (9096 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_42352

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58105	3	6608 bp	MLOC_58105.1	Available	Available	LOC_Os12g35630.1, FRAME:-2, EVALUE:0.0, 13112.m03651 protein elongation factor TS family protein, expressed
MLOC_58104	1	1181 bp	MLOC_58104.1	Available	Available	LOC_Os12g35640.1, FRAME:+1, EVALUE:3e-114, 13112.m03654 protein OsAPRL6 adenosine 5-phosphosulfate reductase-like OsAPRL6, expressed
CDS Structure of MLOC_58105

CDS Structure of MLOC_58104

Contig Sequence (9096 bp)

>contig_42352 9096 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCTCGCGTGCGCTCGTGCAAACTCATATGTTCGGTTCTAATTCTACAAAAA
ATCACAGATCGAGGAGCGACATCAAAGATATCAGAGTTTCTTAGTTAACATTTACATGTG
ACTCATCCTAATTTACGCATTCATGATAATTTTTAGAGAATAATGTTGTAAAAGCATCCC
CGTCCTTTTTGTACTTCTCACCTCGCGTGCTCCACAACACTTCACTAGTCAACCACCTAG
TTCATACTTCTTGCGATGCTCCCTCTGGATCAAAATGCATTATCAATAATCTCAGCATTG
ATCGCTCAAGGAAAACGAAAAAGAAGGGAAGATGCGAGGGAAATTCATCAAAGCTTGGAA
GAACAATTCAAGCAGCAGAATAAACAACAAGTTGAAAAAAAGAAAAGAAAAAAAGAGCAA
CACAAGTTAAATAAAGCGGTTAGGGTTAAACTACGCTTTCCATTCCAGCCCTCCGAAAGC
CCGAATCTGCTCTTTCCTGGAAACACCCTCCAAATTTGTTACCAGTACACTTTCTTTCTC
GACCTCCAAAAACAACCAAGAAATCTCACGACGCGTCCTCCTCCCACTCCTCTCCTCCCC
CTCTCGCCATGGCCGGCCGCCTCCTCGCCGCCCCTCTCCTCCTCCTCGTGCTCCTCCAGC
TCCCGGCGCCGTTGCAGGTGTCCGCGTACCCGCTCACGGCGGTACACTCTGGTCGGTGCC
CGAGGCCGGAGGAGAGGCCGCCGCCGTTCCTCCAGGGGCTCCGGGGAACCTGCCGCACCT
CGACGGAGGGACAGCTGGCCAAGGAGGTGCGTGTCTCCCACCATAGCTCCGGGCTGTTTG
GTTGGCTACAGATTGTTTGCTTTTTTTGGGTGTACCTGCGCATTTATTGTGTGGATGAAT
CCGGAGATTCGTTCGTACGGTTCTTCGTTGATCTCTCTTCTCCCGTGAATTCCTGTTCGT
CCGTCGATTCGTCTGTCACACAATTTAATTAAGGTCCAGTTCCTTAATCTTGATGCTATT
TAGGTGCCAAGAAGTTTGTTTTGTTGTTTTACAAGTTTCAGAAGTAAATTGAGCGAATTC
ACTTTGCAATTCTTGGGGCAAAAACTTGACGTTTATCATGATGGGGTTCTGTTCTATCCT
TTTGATTTGGTTAGGCGATTTCCCTGCAATTTCATATGGGGCGAAATAAACCGTTCTGTT
TCATTATTATTTTTTTGTGCGAGCTGATTGGGTATTAGTCAACGCGGGAGTATGAAGGTT
CAGTTGGGTGTCTAGTCTAGCTCTTATCCTGCATCAATTTTTTTCCCACAAATATTGCGC
TCGAGATAAATTTGTTTGGAATGCGTTGGCATCTTTCATCGGTTCAAGCCTTCAAGATGC
CAATTTAGGGGCAATTCAGCTAGATACCGTGTGTTGTTTCGGTGTCATTGAGTGGATCAG
TGTCCTCATTTCTGTAACTTATTGTGCTTATGGTACCAGTGCTTGGCAGTTCATTCTGTG
AGTAAATTAAAACTTCGTGCAGTAGTGAATTAGAACGTACAAGATACTTGTGTAGTAGTG
GATTAATATCCAAAACTTCATGGAGTACCATTGAGCGTTTGGGATGCTAAGGTTTTGGAT
AGCTCTGGCTAGGGAGATGTTTATTTCTTGCTATTACTGAGCTTGGTTACTAATTTAATG
AGATGGTTCTAAGGTTCACTGTGCTAAGAGGTTTAAATGCCTCAAGGGATTGCCTGCCAA
TGAGACGGCGCCGTCTGGGCTAAGTGGTTTAAACGTATCAACGGACTGCCCACCTGATAG
AACCAAGATGTGTTAAGCCTACTTGTTCAGTATGGATCGTCCAATATGATGGTTTTATGT
CATAGCAGTTCCATGTAGTCTCTGCTCTCTAGTCAATTTGCTGTAGTGCGGATAATTGGC
AACGTAGACTGCCAAAAGCATCTGTTTATGAAGCTGAGTTCTTTAGTCCATGTCGGGCTT
AATATGAACCTCACCTTGAAAAACTTTGCAGGTTAATGGGGAGGAACTTATCAGAGAATT
GGGTGGAAAGGAGTACACTGCTGTCCTCTTCTATGCATCATGGTGCCCTTTCTCTCATAG
AATGAGACCAATCTTCGACGATCTTAGCTCAATGTATCCACATATTAAGCACTTGGCTGT
AGAACAGTCCAACGTGATGCCAACGTAAGAGCCTTATGCGTAGTGGTGTTCCTCTCATCC
TTTCTTACCCATTAATATGACCGATGGCCTTAACTAATACTTCCTTATGATTTGCAGAGT
TTTATCAAGATATGGTGTCCGCAGCCTTCCTTCTATACTAATAGCTCATGAGTCATATGC
GTTCTGGCCTCTTGTTGCTAAAGATCTCAACTCACTGGTCAACTTTTACTCTGCTGTTAC
TGGTAGGTTTCTCAATGTTCATCATGCATTCACTGATTTGTGGCCCACCTGATATCCTGA
TGTGATTAGCAAATAAATGGGTGGTGTGGTACACCACTGTTTTAGTATGAAATATTAATT
ATCTTGCTGTCCAAGCAGCCTGTGCTCTATTGGCACAACTCGAAAGACGGGAATAGTAGT
TCTATGGATAAGATGGCGACAGCAATTCTCTGGAGGAGAAATGGCAATACGATTATATGG
ATGTTAAATGTGCACAGATGTAATTGTCATAATTTTACTATAAACTAACCAGTATGGTTG
TTAGATCGGATACTGCATTATCATTAGCTGGTCACACTTCGATGATCTTACTAAATTCAT
AGAATAATAGGAAGTACGTGGTGGTACTCTCATTCGGGCTTAACAGAGACTCTGTTCGAT
GCAGGACAAGAACCAGTTGCATATCTTGGTCCGCGGAAGTGGAACACAACCGGAAGAAGC
ACACAGTATGCGAAGCTGTGGAATGGTTCAGTCAGCGAATCAGTGAAGAGCGAGCCCTAC
CTAGCATTCAGCATCCTCTTTATTTGCCTAAGGATATTTTTGTTCTTCTTCCCAAAGTTC
TTCGCCTGCATCAAAGGCTTGTGGACCCAATACTTTCGGCACGCCAACTTTGGAGTGCTT
GCCAAATTGACCCAGCTGCTCGAATGTGTGCCCCATGCCGTGGATGTAAGGAAGTTGTGG
AGCAAATGGAGGCTCATGGTTGGAGCCATAAACACGAGAGTCTGGGCATCATCTCTAGCT
TCTGTGTCTCTTGGTGGGCAATCTTCTCCCCGAGCTGCTAGGTTGGATTGATGGTTTGGA
CTTTAACATTGAGCGGGAGAGCATGCGGGCTGTTTGAATTGCGCTGGATGTGGAAGCTCC
TGTGACTCACATGAAAATGTAGTGAAACATCTTGTTTGTAGCATGTAAATCTTAGGGATA
CTGCTGAGCCTGTGTAGATCACACTGTAACATTAATCATGAGTACCCATTGTCATAGTTT
TGAGCAACTGGGCACACAGCATAAGCCTTGTACTATTTTTCACATGTAATCTGCAATTGC
AGTATGACATTTCGACCTATGTTTCCATATAGTACCATCTGTCTTCTGGCTTCAGCAAGA
ACTCTGAATTAAAACATGGAACCAGATACCAATTTAATTTGCCGTAATCCTTTCATGGAC
AATATATTGATCTCTCTTGTCATCTACATTGAAGGTGTGCAAAAAAGCGTGTGGTTTGGA
ACCAGGAACGATAGTAACAGGTGATACAAAATTATACATGGAACCGAGTACAACTGAGTA
CAAACTAGCAACAGCTATGCATCATGATGAATCAAAATGTGCCCAACTCCTGATGTCAGG
GATTGTGACGGAGGTCACTGTCTCATTTATCAGTTTTCGCCGAGGGTATACCTGACAAAC
CTCCGTACCTTGATGTTCTCCCCCAGACCAGCGATCGTCTCCTTCACGAGATCCTTCACC
GTCTTGCTGTCATCCTTGATGAAGGGCTGCTCCAGGAGGGCCATCACGCCGAGCCTCTTC
GATATCCGCCCTTCCACGATCTTCTCCCTGATGTTCTCGGGTTTTGACTGCAGGTCCTCC
CTCTGCATCTCAATCTCCTTCTCCTTGCTGACAATACTCTCTGGTATGTCGTCCATTGAG
ACATATTCGACCTGCGGGCATGCCACCACTTGCATTGCGAGGTCATTCACCAGCTCCTTG
AATTTCTCATTGCGAGCCACGAAGTCGGTCTCAGAGTTGATTTCAATCATGCATCCTATG
CGGTTGTCGTGGATGTACGATCCAATCAGGCCTTCAGCGGTTAGGCGAGACGACTTCTTG
TCTGCGGACGAGAGGCCCTTTTTCCTGAGGAACTCCTGAGCACCCTGAAGGTCACCCCCA
GTCTCAGCCAGCGCTTTCTTGCAGTCCATCATACCAGCGCCAGTTTCATCTCGGAGTTGC
TTTACCAATGCAGCTGAAATTGCCACAGCTGGTTTCCTGGAAACATAGGTATGTTATAAG
TATATAGATTGAAAGATCTATGCAGTTTGAAATCAGAAATGCCAAGGCAGTAAAAACATT
CTGGTGCACATATTATGCACACCCCAAGAAACATAAACAGCACATATGAGCAACATGAGA
TTCTGAGAGGAATATTACTTCTCTGCGGCTTCAGCCGATTCATCGGGCTTGTCATCCTTC
ACAGGAGCAGCTGGTGGTGGCTTCGCGGCTGTCTGGGCTGCAACTTCAGCAGCAAAATCC
TGGCTTCTTTTCTCCAACCCTTCTCCCAGGTTGTACCGAACAAACCTCCTCACCTTCATG
TTCTCTCCAATTGTAGCAATAGTTTGCTTCACCCATTCACCGGCTGTGACCTTATCATTC
TTGATGAATGGTTGCTCAAGCAAGGCAAATTCTCCAAGCCTCTTCTTTACTCGGCCCTCA
ACAATCTTAGCACGGATCTGCTCAGGCTTCGAGAGCAAGTCCTCCCTCTGCATCTCCAAC
TCCGTCTCCTTCTTCACAACCTCCTCAGGGACATCGTCAATGGAAATGTAATTTACTTGA
GGGCAAGCAGCAGCTTGCATGGCAAGATCATCGACCAACTCCTTAAAGATGTCACCTCGT
GATACAAAGTCAGTCTCACAGTTCAATTCAATAAGGATACCGATTCTGCTGTCATGTATG
TAAGAACCAATTCTTCCCTCCGCAGTGGCTCTTCCAGCCCTCTTGTCAGCAGCAGCCAGC
CCTTTCTTCCGGAGGAATTCCTGAGCTTTATCAATGTCACCACTCGATTCAGCAAGAGCC
TTTTTGCAGTCCATCATGCCTGCTCCAGTTGCATCACGTAACTGCTTGACAAGAGCAGGA
GAAATAGTTGCTGCACAGATGCAGAAAAGAACCATCAAAATCTTTCAGTTCATCAACAAA
GTGCAATATGCAGTGAACTGTGATGCAGAAAATGCAGGGACAAGTATGTTTGTAAAAGAA
GGAACAAAATGAAATTGCAAATAATGGAGGTGTTAATTAGAAGAATTAGTGCACCTGTTA
ACTTACACTGCATCCATAAAAGCTTTAGGACCACGTACTGGTGTCTCATTTTACAGTAAG
TTCTGATTGATATTTGAAAATCACAATTTGTATCAGGCAATCACTTTCTAAATGCATTTA
CGAGACATAGTTGCACGTCATCAGGAAATCCCTTTATGCCATCTTGGAATATTAAACAGC
AAACTTAAAGACTTTCAATGCTGTCAACAAATTTGTAGGAAAAAGTGTAGTTGCCACATG
AAACAAAACAAAAATCAGACCCAAGCTATGCAAATGCAGAAGAGGAAGAAAGCCCCCTAA
TGCGATGTTGCAAAAACTGAAGCCAAACCAAAGTATCATGCCGAGGTTTATCCTCCATAG
TTCAAAACTGTACAGTGGCGGGGGAGGGGATATCTGGATTGTACATATTGAGCCTTATTC
GATCAACTCAAAACTTTGAGCTAGCGAGGAAAAAAATTAAGTGCATTGTTTCTTGGGTCA
TTTACCAACGTAAGGAACAATACCACAAGAAGAAATATAAAAAGAACTGGCAAAAGGAGT
TGCTTGAACAGTTTACATGCAATCTATCCTAATACTCTTCCTAATTAGGTAGAGTTGCTT
GAAGAGCCTTTCGCAGACAGGACGTGACTGATCAAATTACTACATATCAGGGCCTTTTGC
AGATAAGATCTGGTCGACAAAAATTACTGCTGACCTGTGGTTATGCTTGCTTCTGCAGCT
CCAGTAGCAGAAACCTCTGTGGTTTTCTCATCCGGGGCTGCTACTTCCTCAGTTACCACA
GCAGACTCACTACTTGCAGTTGCAGGAACCTCCGGCACTGATTCTTCTGGCTCCTCAGCC
TTATCAAGAGGAGTGATTTCCTCAACGGCGCCAGTGGCAGCTTCTGTTGAAGAGCTACCC
TCCTCTTTGCTTTCAACTTCAATAGCAGAAACTGTAGGAGGCTCAGCGGCGCCAGTGACA
GCTTCTGTTGAAGCGCTGTCCTCCTCTTTGCTTTCAACTTCAGTAGCAGAAACTGTAGGA
GGCTCAACGGCACCAGTGACAGCTTCTGTTGAAGAGCTATCCTCTTTGCTTTCAACTTCA
GTAGGAGACTCAACGAGCTTGTCGTCAACTGTGCTTTCAACCCCAGAAGTTGAAACTGAA
GTCTCAGTCTCAACTTCTGTTTTCACTTCTGGAGCAGTAACCTTTTCCCTCTGGTCCAAG
AATGCAGAGATTTCCTTGCTCCTACGGAAAGCTAACTCGAAAGCGTTGGTCCCTCTGGAC
CATCCCTGCTTCAGGTTGGTGTTTAACGACGACAACTCGTCTTCATCATCTTCTCCCCCC
TTCATTGTCAATGTGACCTGGCCTCGTGCTACATTCAATACTTTCACCGTTACCTCTTGA
CCAACTTCCAGCGCGGAATGCCCGATAAGGGTAAACAGTGCCGCTGCTTCCTCTTCCCTT
GGGAGGAATCCTTCTTCTCCATCAGGCAGTGTCACAAATGACCCCGTTCTTGTTGTATTT
TTCACAGTGCCAGTCAGAGATTGTCCTCGTGCATACTTTGACTCGTCTATCTTCTTGAAA
TCCTTTGTTTGCCTTGGTGAGCTTCTAGGCGCAGCTGCAGTTGGGCTCCTCCCACCGCTT
GGAGCTGTAGGTGCTTCCTTGACATAATCTCCACCTGTCCGCATTGTCAAGGAGATGCGC
CTCGTTTCTTTATTTACTTCCACTAATTTCACTGACACCTCTTGCCCAACAGTGAAGAGG
GTAGATATATCTTCGACAAAACCATCGCTTACTCGGGAGATATGAACAAGGCCTTCAGTG
AATGCTCCAATGTCAACAAAGACTCCAAATGGCTTGATAGACCTGACTTTCCCGGTAAAG
GACACACCAGGAACAAGATCACCATCCTTCAACGGCGGCATCTCGCTCTTACGTGGGTTG
CGACCTAACTTGGGAGGGGAGGAAGCCGGGGTCGTGCTAGCCACAGCCTGCCCAGTGGTT
TCAGCAGCGGCAGGTGCGGCCTCGGAGGTTTCGCCGGAAGTTTCTCCTGACGAAGATGAT
GAACCCTCCACCGCAACATCAGTCTCAACAGCTGCTGCTGACAAGGTCCTCAGCCTGTTG
TTGGCAGAGGACCAGCTTCTTTTGTACATGCTGATCAGGTGGAATGGTGTCTGTGGCTGC
AGCAGCCCATGGCGCGACTGCGATGTGACTCTTGAATACCTCTCTGAACCACGGAACCTT
CTTATCTGTATTTCTCGGCCGGGCCTGAAGCTGCCTATGTGGAACAGGCTGATGGTGCCA
ACAGAGCAATGAACCACCGGCGTCATGCTGAATTCAGGGGAGCTGTATCGGAAACTTGAT
TCCTTCAGAACCCTGCACGAGGACAGAGACTCGTTTCAGCACCAAGCAAGAAGAGCAAAA
TAATCTGACGAACAAAGAGCAATACATGATAAGAGATACTGCTAAAGAGCATCAGTTGAG
AACTGCGAACATGCATATGCAGTACACCGGACCCAAGAAAATTTGGCGCAAGCAACTATT
GCAGTGGATTTTAAATATGGAGAGCATCCTGTCCAGCATTCCAGTGCCTATGCACAGAGC
GAGTACTGCTACCCTACAATACAACTTATCGATTTGGAGGGAAAGCGGGCTGCAGTGCTC
CGAAGCAAGACGGCCGTCGGCAGTCGGCGCAGGCATACCCACAAACACGTCCCGCGCAAG
CGATAGCAAAGGAGGTGGTTGAGAGGGCGGGAGGCGAGAGACATAGACGACGGCGCTGGC
CGCATTAGTGTCACCGACGAGCTAGCTACGCGGTATAGCGGCCGGCCAGGCAGCACGGAT
TTTCGTGGGAACAACGGCGTTACCTCGTCGGGGCGACGGCGAGCTCCCGCGGTGGCCGTG
GTGAGGAGAGGGAGCGCTGAGGAGGAGGCGGAGGGGTCGCTGGGGATATATAGCCTTATC
TGGAAAGGAAACGAAACGAAACGAAGAAAGAGCGCAGAGGTGATAGACTGATGGCACAGC
AGTGGATGGCCGGGATGGATGGGGCACAGCAGTTTTGCTTTGCCGCTGGACCTGACTGAC
CCCAGTACCAGACCATGATCACGAATTCACGATCGAGTTCAGCCGGGCAGGTCATCGGCA
GGTTTAACGCGGCGCGTATGCAGCAGCCGCGTTAAAATTCAACACGCACAGCTCCAGCAA
CGCACTAAAATACAGCGCGCGCGAGCAGCCGACATTGACATTTGTTCATTTTGAACACAA
ATTTCACACATTAACACAAAACACATGGCATATAATTTGAATCACAAACATCATTCAACC
AAATTCGTGCCCAAAAGTTCATGCCCACAACATCATTCAACGAAGTTTAAAATACAAACC
AAGTTCATGACACAAACGAAAGGCACAACAATCAAACCTCGTCCTCGTCTTCATCATCAT
CTTCCTCCGATTCATCCAACTCCGCCGAAGACAATTCTTCCTCCTTCTCTCCATTGTTGT
GTGTCGCATCTTCATCACGTGAAGCTCGGAAGGTGTTGCCAAGATCGTGGGAAGGTGGCA
CACCGGCGTCCGGAGGTGCACCCATGCCGCTAATGAGAGACGCAAAACTCATGCCACCCA
TGCCACCCATGCCGTCCAAGCCGCCCGGAGGTGGTC