morexGenes - Barley RNA-seq Database

Contig contig_42283
Source Contig contig_42283
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42283 (8919 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_42283

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_58033	3	2152 bp	MLOC_58033.1	Available	Available	LOC_Os01g42990.1, FRAME:-3, EVALUE:2e-116, 13101.m04430 protein PPR repeat domain containing protein, putative
CDS Structure of MLOC_58033

Contig Sequence (8919 bp)

>contig_42283 8919 assembly3_WGSMorex_rbca.fasta
CAAAGAAGGAACTCGAATGGCGGCAGCGGCGATGTGTGGATGTGCTTGATCCGATCTGGT
TCGGTGGTGAAGGTGAAGAAAGACTGGATACGGGAAGGTGCGGTGGCAATTGTGAAGTAA
TTTCGTTCGGTGGTGAAGATGAAGAAAGACCGGATACGGGAAGGTGCGGTGGCAATTGTG
AAGTAATTTCGATAAATATCCGGGGCAATCAAGTGTACCGTTTCGTTTTAAGTGTGTACG
CGGGTGCAGGCATGGGGCTGGCTCAGGGAAACGCCCGATTCATGCGTTTCTCCTCAGCCT
GGCTGGGAGCTCTATTTTGCGTGGGTCGGGTCAGACCCAGTTAAACGTGCAGTCTACCAA
ACATCTGAGAGTGCAGTCTACCAAACATCTGAGAATTTGCACGCGGGGTGCAAGCCAGGT
GCGAGTCGAGCAACCAAACACGCTCAAGGTGACTGGTGGTGGAGGATCAGGTGGGGACTG
CGGCGACGTGTTCTCCCCTTCCCTGTCCGCGAGAACAGTTCATTCCCATCGTGAGACTAG
ATCAACTCATCCTACAAGGCTGCAGCAACATCCAATCTTGCCATCCATAGGAAGACAGCG
GTAGCTCAATGACCCAGCGTCTGCAGCATCAACAACGCAACTGCCCAGTGAGCTATTCCT
CCTATTCGTCCTCCTCTCTTCAGTATTATATGATTCTTGTTACTTTGTGCACGTGTCTAC
ATTTTCGTGCCATTAAGTGTTCTTGTCTATCTTGATATTGGGATATAGCTGCAGCAAATC
ACAGGTTTGGAAGGCAAAAAGAACAAGGCATAGTTATAGATCACAGCTGACATATGGGCC
TCGCACAGTGACACTGAAGCTCTCTGTTCCCTTGGGTCAATCACCATGATTTTTACAGAT
GATGTTTCTTCTTTTCAACAGGGGAAAATAACCATATTTAGGGACGAGGCTGAATCAAAT
CCATCCCATCTATCTCTCCAAACCAAACACAAAAAGGAAACCATTACGTTTCACTCTACT
GACTCCAACCACACAGATGAATGAATGGAAAAATTCCATTACGCTGTAACGAAACCATGG
TATTCAGTAGCTGGGCATTCCTCGCAATCGAAGAACCTTGCGGTTGGTGGGAATGGCTCC
ACTCCTCAAGTTGAGTTGAACACGTGTTTCTGTACAATTTCTCTGAAATTCTCACCGAAG
TGCTAGGCCGAGAGGAGCCCCCGAACATTAGCTGGCAAACCAAACCAGCAACCATCATCG
ATCAGTTAGTATGAGCCTGCAGATTCCTGAATGTGGACTTGGGAGTATGTGATGCAAATG
AAAGCACGGGAGATGAAACAAGAACAAGGCAGAATGGAGAATTCACAGCATTGAGTGTTG
TTCTTCCAAAGTGAACTGAAATGGAGAGCAGCAAAACATCTATACTGAAAAGGGGAGTAT
GCTGATATGCATAAGGTTCACTCATCAGGGCAAGCAAATCCTCATGTGTGACGTAAATTC
AACTAGCAATATAGGAATGCACTTCATCGTCTAAAATGCCCTGGCATTCAGTAGTCAGCA
GCGAGGCACCACATCCAAAAACTATGTATGCGATAAACCAGACCAACACCGTTCTCTTGT
AACCTCAGAATTTACTTATTAAACGATTCATCAAACAAGTACAAAATGGTCACCTCCAGA
TGTTGCCGCGAATGGTCATACCGCCGCCGCCGTCTTCTCTGGCTGCTGCTGCTCGTCCTC
CTCCACTTCCTCCTCTTCGTTGCTGGCACCCGGTGTGAGGCCGGCATCCTTCTCAAGCTC
CTTCCATGGACCGTCGAACTGGTCAGGGAACTTCTTGCGTAGCCCGACCACCACCCGTCT
CGCCGCCCGACCCTTGCCAGCCTCCTTGAGAGCCACTACCAGCTTACGCACTGTGCCCAG
ATCTGCCACCTTCTTGCGCTTTACCCCCTCGTAGAACACGTCCTCCGCCTCTGACAACCT
CCCCTCGCTGCACAGCGCCCCCACCATGCATGCGTATGTTGCGCACTCCGGTGCCGACTT
CGCCTCAGAGTTCCCCTCCGCCCCCTTCTCCTGCAAGCTCCTGTATACCTCCATGGCCTC
GTCCACCCTCTTGTGCCGCCCCAACACCCGGATCAGCCCATTGTAGGAGACGACATCCGG
CCGCAGCCCCGACTCCTCGCCCATGGCTCGGATAAGCTCCTCCACCTCTTCCACCGTGCC
GGTTGCCGACTTGTAGGTGATCCTGACGTTGTAAGCGGCAGCGTCGGGCGCGATGCCGCG
TTCTTCAACCATCTCGCGCCACATCTCCTCGGCGCGGTGGGGCTTCTTTTGCTTGTAGTA
GGAGTCGATGATGGCCGTGTAGAGGTGGAGGGAAGGTGGCTCCTCCCCGTGGAGGAGGTA
CACCGCGTGGTCAGCACCTTTGGTGATGCAGAGGGACTTGGCGAGGATGGACCACGTAAA
GGCGTCGCGCGGCGCGGAGGGGTGTGCGTCCAGCAGAGCAGGCACGAGCTCGGCGAGGCG
GCGGCGGCGGAGGAGCGGGCCCAGGAGGGCGTTGAGATGCTCGGCGGTGGGCGACGGGAT
GGTGGAGAGGATGGACGAGGCCCGGTCGGAGAGGCCGACCACGGAGAGGGCGGAGATCAC
GGCTTTCGTGTTGGTCGCTACGAGCGGCGCGACGGCGGCGTCGATGTCGGCGAGGCGGCC
CGCGCGGGCGAGGCTGCGGATGCGGGCCATCGGGACGGGGAACTCGGCAGAAGCAGCGGC
GTTTGAGAGCAGGCGGCGGCCGGAGGCAGAGAAGATGGCGGCCATTGCTGCGGCGGAGCT
GTGTCTGATCGATCCGAGGTTTCGGGGTTAGGGTTTAGGACGAGTGGGGGAAAGTTTCAC
TCGGCGGATTGTGTCATTTGGGAAATGGATGGAAGTTGGGACAGTGGGTGGCGGGCCCGT
GTTGGAATCCCGGGCCAGTCCCCGGCCCAATACTTACCCTTCACCCCGCCGCTGCTGAGT
TGGAGCCATGGAGTTTGTTATTAGGGCTAAAGTGGCCATGGCCCCTAGCCGAATTTATCT
ACTTATGTCAACCTCTCAAAAAAACAAAAATCTACATATATCAACTTCTGACGTTTAAGA
CTTACTACCCAATATCTCTGTGCCCCTAAAACAAATGCATGTTCGTTGCAATAAGTAAAC
ATTTCTTTCATATATCTAGTTTATGTATCTTGATTATTCCATGCATTTTAAAATCAAACA
AAAAATTAGCCGTACCAAACTAATTTTACGTCTTTTATGGTTTATGATTTCGGTATGATA
TGAACTCTCTGTACCGTTTTAAACTTTGGTTTTATGGTATATACCGAAAACTGAATGGTT
AATTGAACAAATTGAAGTGAAAAATATTTTTATATTATTTAAGAAGAAGAACCATTCAAA
TAGTCATCCTACAATTTTAATGTTATCCACGTTAGCATGGTGCCATATCAGCGTTCATTT
TGTTAGAAAGAACCGACCGCTCGGACTCCCCTACAGTCTAACCTTACACCTATGGAGAAC
GAAGGAATTTTTATTATACAAGGAGCCAAATTTCTGAGCATGTCCATTTTTTTTGTAATG
TATCATTTTTCTCTTAAAAACATGCTAAACTCTTCCATAACTATCAACGCACGAATCCAT
GCATGCATATATAATATACTTAGTATATGGTTTGTATAAAAATGTGTTTTGGGCAATAAA
TTTGTAAATTATTATTATGTCATTTTCAGATTTTGCGTCAACTTTGGTTATCACGGTATA
TATCAAAATCATACCGAAATAATTTTATATATATCAAGACTGAGTTGTATCTTAATTTCG
TACTATGTTATGAAAGTATTAAACAGTACAACTCAGAAGATCGTATAAACGGAATGCACA
TAGCTAGCAATAGAAAAAACGCTTGATTTAGCGGTACATGTATTCTTTGTCTAGTTGAAC
ACAATATATTGTAAGGGGTATCGACAAATAGAGCTACAATAATCAATCAAGTTTAATGAT
GTGGTCTTGCACGAGATTCACTAAATTCAATTACGGAACTTAAACTCATATAGAAACAGA
TCATAAATTGTAATATATCCAGTTAGCGATTATTATACCAGTAATAGTGGGGGAAACAAA
TGAGTCTATACCATAGAAATTTTTGCACAATTATGATCTTTGAGTTTTACTATTCAAGAT
TCACATTGACACATTATTCCTAGTTCTTTTGCGAGTTGATAATCTTGGCGAGATGATTAT
TCAAAAGTAGACACTACAGTATCAATTGTCCACACGTGCATAATATTAGCCTGCCTTTAT
GCAGACTCTGGATCTTACATTTTTAAGAAGTTCATCCCCGCTACAAGGCTTTCTCTCAAC
ACACACATTGCCCAGCTCAACATTGCCATGTCACCGTTTTTTAAGGATTGCCATGACACC
ATTCACCTATAAATAACAACTCATGACATCCCCCCCTCCCTCCCCCCCCNNNNTCTCTCT
CTCCCTCTCCCTCTCTTAAGTGGATTCTATGCGAGTACATGAATGCTTCCAAGCCATTAA
TTGATATTTTAACCAACATACAAATTGTGTTGCAACTTGTAAGTGCATCTAGTGTCCCCT
TAGTGGTTTTGGAGTGTTGAAGACAAATGGGTTAAGGGACTGATGTGTTTGTGAGTGTAC
ATATGTATTATAGTCCCTAAAGAGTTTCGTTTAATCGACGAAAGACGACCCCTAAAAATG
TTTTTCTTCAAGTGAAGACTTTGGTGCTGTTCGTGAAGAAATTGACGTGAAGAATTTGGT
TTGACCTCTCAAGAAAGACGTGAAGAATTTAGTTTGACATGTGAAGAAACTGACGTGAGG
ACTTTGAAGCTTGAAGACCTCGATTTCATAGTTTCTTTTTCCCCTCTTATTGAGTCATAG
GAAACACCATACTGTTAAATGGGGTCGAGGTAATACATAAACAAAATTCTAAGTGATGCT
CTTCTGCAAACCTACACCTACCTATTTCTTTGAGTGAAGACTTTGGAAATATCTTACAGT
GTAGTCGAGTTCTTCACTGACAACGACGAAGTTCTTCTTGTCGCTGAGGAAATTCGTCTA
AGTGAGGAGTTAGGATTTCGCTAGTGCGAATTTCCTAGCATGAGGAAATTGATAGCCTCG
AGGAATTTGTGAGTTCAAATTTCCGATCGTTGTTGCATTGTGTGCCAGCTGTCGAGTGCA
TCCTTATCCTAACAACGGTCATGTCTAGAGGGGCATTTATGTCACATCATGTCGGGTTGC
CCCTCGCTATAAATAGCCACCCCCACAAAAACTAGTTTGTTGACTGCTCCGAGAGAGAGA
GAGAGAGATTAACAAGTGTCATCTAGTGTAACCCTTCGTCTGACGATTTTGAGAGAATCC
AAAGTGAGGAAAAAACCATACACCCAGAGCCTCAAAGTAATTGAGCATTACTGGCGAAAT
TGTCATGTGTGGAAACGATGTTTGTTACCTTTTTAGATCGTGTATCTTCCAGATGGTTAG
GCTTCATGGTCTAGAGCATCCAAGAGTAATTGTGGATTATCAGGTGACCAAGTCTATGAA
GATTTGGAGTCTACCTTGAAGAGTTACCACGAGTGATTGGACAGAGTCTATGTGACTTTA
GCTCAAGGAGAATTCGATGAGGATTGTGTGTCCTCTGGTTTGAATTCCATGCCGCTCCAA
CCAGGCGTACAACTGCCATAAGAGTTGGAACTGGCGGAACAAATTCTTGTCTTCACCGAG
CAACTGGTTCTATTTCTTCAACCCTTCCATTTCCTCATTTATATGTTAGTGAAATTGATC
CATGTTGCTTGAAGACTTTGAGAGAAGACTTTCTCAATTTCCTCAATCCAAATTCTTTAG
TCACTTTACCTTTTGCCTGCTTATCCTGACTACATGCTACTTGTACCTCGTGCATGCCCT
ATTTCATCATGACGACTTTGATGTTACCATGTTTTGCATGCATATGATTACTTTATTTGT
AGTGTAGTAATTCATCCCTCCGTATTTCTTCATATAATAATTCCTCAGTGAAGAATTTGG
AAAAATTGCCCAATCACCCCCCCTTTGGTCGATCTAACGCACTTTAAATGGGTATCAGAG
TAAGGTACTCCCTTGTNCTGTGTGATTTTGGTTTAACCACCCAAAGTTTTAGTTATGTGC
ACTACAGGTATGATTTAGATATTGGTTGGGTGTCCTACCTTATATGGGACTGACTACCCC
TACTGGAAGAACAAGATGTGTATGCATCTTGAGGCAATTGACAATGATCTATGGTATATT
GTGGAAAATGGCATTCCACCCATGGGACCAAGCGTCAACGCTGCCGATGTGAAGAGATTC
AAGCAGCTCGACTCTCAGGCGAATAATATCATATGTGGTCACCTGAGCAAATGTCAGTAC
AACAGAGTGAGTTCTTTGGAAACTTCAAAGCTTACCTGGGACATGTTGTCCAAAGTCAAC
GAGGGGGGTTCAACTCAATGTGACTCCCGAGTTGATGTTGTTCGCAATATCTTCAACCGA
TTCAGAAGACTCAACAACAGAAATGTTAGGCAAACCTTTGGTCGCCTCACTAATATCTTC
AATGAGCTTCAAGCTATTGGTGTTGCTGACATCATCGACCATGAGGTGGTGAAGAAACTG
TTGAGATCTCTTGATTCCTCATTTGACACACTAGCTTTGATGATTCAATAGCATGGAGAT
TACAAGTCATTGGATCCCATTGACATTCTTGAGAGTCTCAATACTCGTGAATTTCAGCAA
TCTAACAAGAGATATCTCCATGGACCAAGCTATGGAAGATCTCATGCATCGAAGGCACAC
ACAATTTCCTCATATGAAGAATTTGACAACATTTTTGGTGATCCTGATGAAATTGGTCAC
GCGCTAGCAATGCTCATCAGGAAATTCCCATAATTTCTAAAGAAGAGTTTGGTTTGGAAA
ATCGTCAAGGAATGATGTGAACAAATCAGAATCTTCATCACGAGACTACAAGAAGAGAAC
TTGCCACAAATGCAGGAAGTCTGTCCACTACATTGCTGATTGCCCTCTCTTAGAAAAGGA
ATCAACAAAGAAGAAGTACAAGGATGATAGTTCTGATGACAATAAGAAGAATAGATCTTT
AAGGTCCTCTTCAAAGTCTTCATCTTACATGAAGAGAAGCTCGAGAAGAGTTCGTGCACT
CATTGGCAAGGAAATGGACTCTACCGAGGAATCTGATGATGCTAAATCCGAGGAGGAATC
TGAGGAGGAGACATACTCGAGTGTGGCGAGCCTTGCTCTCGCTACCGCTTTCGTTAGTAA
GTCCATCTTCAACCTTGAAGAATATGACAACGTCAACAACACTGATGATTACGACGACAA
TTTTGCTCCCACCTATTGCTTCATAGGAAAGGTGCCAAGGCACTCAAACGTCCTTCCTCC
TCTAAATCAATTGTAGATGAATCTGATGAAAATTTAAAACCCATCTATTCTAAACTTGCT
AAATATTGCCACTAAGCAGCAAAATGCTATGGAAAGGATTCATAAATTGTTACACTAAAG
CGATGACCTATTGAACGAGGAAATGGATCAAACTCAAACTCTCATGGATGACCTACAAAG
TCTTCAATCTAAGTATGATGACCTTCAAAGTCATCATGAAATACTCTTAGTTTATCATGA
GAAGCTTTCCTATGAATTTCTTCAAAGAAAGAAAGATCGTGAGGAACTAAGGGCGTCTCG
TGATGATCTTCGAAGGGAAAACGATTATTTTCTTGCACAACAGATCAGTTTCATTGAGGA
AGAATCTATCCCACCTTGATTGAAATGCATCGAACATGAAACTGCTCATTCTTCACCCCG
AATGTTCAAATGCTTCTGAAACTGCAATTCCTTCAACTATTTATGTGGTCAGAAATTCCT
CATTCGAGGAAGCCACATGTTTCACTAACAATAATGCAGGGTTGAAGGAATTGTATGTGA
CATCATATAAAAAAGCCTCAAAGGGAATCAAACCCTTTGTGTTGTGCTCAAGAAGCGGAA
TTTGAATAGGAACCCTAGGAAAGAGGGTATCACATTCTATAGGAAATTGAATGTCGGTGG
ATCATACTTGAAACCTGAGAAGTATCCTAAGATCACATGGGTTTATACAAAAGGACCTCG
TGTGGATCCATCTACTATATCAGGCTACAACTATGATACTTCAAATTCCTCTCATGAGTC
ATTTGACTCCAACTATAAAATGTTCAAAAATTAGAATGTTGAAGTATTTGCTAGATACAT
TGGAACTAACTACAGGAATGATTCCTCTTTAAGGAAATCTGGGTCCCAAAAGTTGTGTTG
AAAATCTTCACGTGTATGTCATCATGAGACCACCTATGAAGAAGAAGAACCCGAGATCAA
ATTCTTCATATGGACCAAAGTCTTCATATGGAACAAATTCCTCATATGGTCACAAATCTA
CTTGCGCTCGTGTTAATGCTTCTGTTTTGCACGGAAAATCTAGAGGTCGCATTATTCTTC
AACCATTATGTTCACAAATCTACGAAGAATTTCTCTGCTTACTCATTTGATTTCTCTAAC
CCCCTATTGTGAAACGAAGTGCATTAGCTTCAATGCCTCAATTCTCATATACAACTCATA
AAATGATGAATTATTTGCCACCCATTAAAATTTGGGTGGTGAAAAAAACTAATCACTTCT
GCAGGGTTGGGTTTCCAGACAAACTTGAACGTTTGCAAAATTGGCTGGAGACCTGTAGAA
TTCTTGATAGAATGCAAGCTAATCATGAAGAAATGAATCACTCATTTTCTCACGCCCCGA
TGTTACTAATCTCACTATGATGAAATTGATTATCATATTCTTCATTCTAAAGTATAAGAG
GTCATAAGTTGTGCCGGTGAATACTCACAACATATGCCA