morexGenes - Barley RNA-seq Database

Contig contig_42240
Source Contig contig_42240
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_42240 (7781 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_42240

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_57961	2	3339 bp	AK361585	Available	Available	None
MLOC_57960	1	139 bp	None	Available	Available	None
CDS Structure of MLOC_57961

CDS Structure of MLOC_57960

Contig Sequence (7781 bp)

>contig_42240 7781 assembly3_WGSMorex_rbca.fasta
GAATAGTATTATACAACATTAATGGGCATGCCATAGCAGGATACATCTATTTTATGAGAC
GAAACCTTGTGGCACGCGCAACTTCCCCCGGCGGTACAAAGATACAATACGATGCACCAA
TAAGTTCTAGTAAATGGTAAAGTGTTTGATGATACAATATAGAAATAAGTTTTCCAGGCC
CTTAATCTTGTAGCGGTATCTTTGATAGTTCTTGCTTAATTCACACCGGTGGTCCGAACC
ATTTTCGCCAAGTAACAACAGAAATGACATACAACCTGTCATATAGGTTGTCGAGTAGCC
CGAAATAAGCATACCTCCGTCTCTTCATGAAGAGAAGTCCAAAAAACACCATCCAAGCGC
CCACCACAAAACCAATAATTGATCCTAAAAGAAAATCAATCTGAGACAAGCCATCTTCAG
GCAACCTTTCTGGATCTCCGTTGGTTGGAGGACCTGTAGCAGGACCAGGACATTGCATTG
AAACTGGATGTCCACAAAGACCAGGATTGCCAATGTACATAGAAGCTGGGTCATCTGCCT
TGAGGGTGTCCAATTGATGCCCCGAGGGTATTCTTCCAGACAGATCATTGTATGACAAGT
TTAGATTGCTCAGGTATGTCAAATCTGATAAGCTCTGAGGGATTTCACCACCTAGTTTGT
TCCTTGAGAGGTCAAGGGACTCCACTGATCGAAGTTTGCCAATATTATATGGGATATTTC
CACTCAACAAGTTTGATGATAAATTCAAACTTATGAGACCAACAAGGGAGCTTAGTTCAT
TTGGGATCTGTCCAGTCAAATTGTTGCAAGACAAATCAATGCTCATCAGATATACAATAT
TGTCCCCATACTCAAGCTCTTGCCCTTTCATGACCACTGTGATGCTAACATTGATCATTC
CTATATGAGCGGAACGATACTCACCATCGTATGCTTCTTCGAAAGGATTATCAAATGTTG
TCTCATTGCTACTCAATGCTTTCAAGTTTTCTATATATTGCGGTACGGCCCCAGAAAATT
TATTATTGGACAAATCCAGAATTCGAACATTGTGAAGTCCCATTATTTCAACTGGAATGT
GACCAGAAAAGTTGTTCGATCTTAACCGTAGCATAATCAAACCTGGCATGGCTTCATTGA
TCCACCCAGGCAACTCTCCGGTGAATCTATTCTGGGTTAGATCTAGGAAATTAAGACTTG
GACATTGTCGTAGAAGCAAAGGAAATCCACTTGAAAAACTGTTGTTGCTAAGAAGAAGAA
TAGTGATATTCAAACCGAAAGAACTCGGTGAAATGAATTTTGAAGAGTCATTGCCAGAAG
GGTTCTGCTGTTTCATCTCTTCTTGGCCACAATCAGGAAGTTCCTTTGAAAGCAGGTTGT
TTGAAAGATCTAAGATCCGCAATTTCCGCATTCGACAAATAGACGTCGGAATAGTCCCGG
ATATAGCATTGGAAAACAGAACTGCAACTTGCAAATTTTGGGCTCCTAAATCTGCTACAA
ACCCATTTAAGAAGTTTCTGGATATGTCCAATACCTTAATTGTACCTGGTAACTTGGGTA
TCAAACCTGTCAGTAGATTTGATTGCATTAAAAGTGTAGTCATTGACATGAATTCGAGAT
TGAATGATAAGTCTCCGCTAAGTTGGTTCAAGGAGATATCCAACCATGTAGCTTCCGAAA
AGGTAGTCCAAAACCAATCTGGGACCCTATCAACTAGACCTGTGTTTGGAATAATAAGTT
CACCGATGCTCTTCTGCCATCGAAGCCATTTAGGAAACTTGGGACCCAAATTACAATATG
ATAACTGTGCTGATTCCAAGTTGAACGGAGGTACCCAATGCGAGCCAATAATAACTTCCA
AATAATTCTCAGATAAGTCAATGTACTTTAAATTCATCAAACCAACAAAATGATCTTCTG
TCATCACACCGCTCAAGTTGTTGAACGCAAGGTCTAAGTAAGCCAATTTTGTAAGTGTAC
CAATTTCCACGGGCACTGAACTTCTCAAGTTGTTTTGTTGAAGGTCTAAGTAAGTTAAAT
TTGCAAGCGCACAATCTCCACAGGCACTGAACCGCTCAATTGGTTGTGACTGACTTCAAG
CATGTTTAAGCTGGTTAGGTTTGACACAAATTGTAATGTTGTGCCAATGATGTTGGCACT
CTCCAGAATCAACTGTTGCAAATTCTTCCAGGAGCACTTGGGTATCGAGTCTATCACCTC
TTTTATGTCCATGCTGATGTTATTGAAGCTGAGATCTAGAGACCTTAGATGACACATATT
TTGCAGTGCTCGTGGTATCATTCCATCAACGTTGTTGAATCCAAAGGCAAAATTCTCTAA
CAAGGTCAAGTTTCCGAGCTTGTTAGCAAACGTGCCTGATAATCCACATTCCACTAACCG
CAGGCTCCTGAGGCTAGTTACATTCCATAACCAGTTGGGTGTATCTGGACTGCTGAATTG
GTTACCAGTGAGGTCAATCACTTCAAGAAGTGTAAGGTTGTGGTGTACAAACGAGGATGG
AACATTACTATTAGTAAGTCCACATTGAAACAGAATCAGTACAACCAAATTAGGAAGTGC
GCCGACCATATGGACCCAGTCGACGACTTCAGGGAGGCCGACGGAGCCCATGTTAAGATG
CTCTAGCGAGCGAAGACGCGTTAACCAAGATATATCCTTTGAGTATTGATAACCGCCAAA
AATATTACCTTGTATGTCAAGCTGTACTAGGTTGGAGAGGTTGCCTAACTGAGGAGGCAC
TAGACCATGAAAATCCGTATTGGAGAGGTTGAGATAAGTCAAACTCTTGATAGAGCCCAA
GAACCCCGGCATAGCCTTTGCATCTCCGAGGAGATAGTTCTGGCTAAGGTCGAGATATTT
GAGGCGTGTGAGAGCAAGCAAAGAAGGAGATAACTGACCACGCAGTGAGTGGTTCTCAGG
GTCATCATCAGATAAGTAATACACCATTGGAATATCTTGGTGGAGGTCGAGCTTGACGAC
GTGGCCTGTCCGATGGCTGCAGGTGACGCCACTCCACCGGCAGCAGTCATGCGCACCCTG
CTGCCATGAAGCGAGACGATTGTCCGGGTCGCCTGTGATGCCGGCCTTGAAGGAGAGCAG
CGCGGCCCTCTCGGCCGGGATGCAGCCCCCGTTGGATGTTCGGCTCGCCTTGATGGCGAC
GGAGGAGGAGGTGGCGCTGGTGGTGCTGGCTAGGATGATGGTTAGCAAAAGGAAGCTTGC
TGCAGCCATTTCGACCCGGAACGGAGGCATGGTGGTCATGGGCATGGCAAGTGTGTGCAC
AAGAAGAAATCTGCCACAACTTCTAGTTGGGTGATTCGCTAGTTGCGCCAATCAGTTAGA
GCATGGTGTGGTCGTGGACTCATGGTAGGGTTTCCACGGGATGAAGAGTCAAATCAAAGT
AGAAAAAATTGGCCGGGTGCCGTGTCTTGTAGGGGATACGGGCTACCACAACTTTGGATG
GGTGACACACACACACACGCACGCACACTAAGTTGGCCCAATCAGCTGCAGCTGTGGCTG
TCAGTGCGTCACTCGTCCTAGCTATTAACCGGGGTTCATGTTTCAAGCCGAGCAAATAAG
TTTGTGGATGAGTTACGTAAACATTCATATATATGTTGCAATCAGAGCTACTTGAATCAG
CACGGCAGTTTGTTCGAGCACGGGAGATGGTTCAGAAGACAAATTCAGATGCTATTCTGA
ATCCTCGAAAATAATAGAAAAAAAGGGCCAAAAGAATGAAGGCGAGACTTTGGCCTCGAC
GAGTGAAGCATGCATGTTAGGTGGAGTCATTGGTCCATCCCAGCGGAAGGGGGAGGAGGA
GCTGGTGTTGTTGGAATGAGATGGCCGTGCGCTAACGCCGTGGTGTGATGAGACTCATGA
GTCATGACCCAGCCTGCCTCTCAAGATTTGGACACCTAATAAGCTCTAATTCAGTTAAGT
TTGAAACATTTGGTTTGGGCGCGAAGCAACACGAGCCATCCATCATCCATCCCACGCTTC
CCCTTCCTCTGTACCATTTCACGGCGTTCTGATGAAGCGGAAGACGTTGACCAGTCATCA
GGCCTTCAGACGACACCTCCCTTCTATTTTGTCGTCCTGGACCGATACCCCCACCTCCCG
CTGCGCTGCGTCCCGCCTTGCCCATCAGAAAAAGGAGTAATGCTACACCTACAAAGGCTT
ACTTAAATATTTTATTACGTATAAACTGATGTGTAGGATTGTGGATTGGTAATTGGGGGA
TGAGGGGCACCACCTCCACTGAAAATCAAGGGGAGAAAATAATTAGTTTGAAAGGTTAAG
TACACTTTTGTAAGTCTTTGTAGGTCTAGCATTATTGTCAGAAAAAGGGCAACGGGTTTG
TTGCCAAGGTTTGAAAACGACAACACAAATTCATTTCCATTTTTGATAACGATTGTAAAT
TTCTTATTGATCTGGTAGATTTTTTAGAGGAGCATCGGGGGCTTTCCCCGGCCGAGGACG
ACCTGCGGCACGACGCTTGGCAGGCGCTCGCTCCGTCTGTTGTGCGTCAGGCTGTCTACA
GATGACAGCGGGGGAAGTGTCGCACCGTGATGGAGGGCGACGAGAATACCGGCTACTTCC
ACGCCCGCGCTTCTTAGCATCATCCGGTTCTCGTCGTCGGAGGCGTGGAGCTCAGGAGGA
AGCGCTGCGGCGGTACTACTCCGACCTGCTGGGTCGGCCCCCCTCGTAACGTGGGGGTTC
GACCTAGGGTGTGTTTGGTTTCAGGATGAGGTGGAATCGGACGGGTTGGTTCCATCCCTA
GCAGCCATTTTTGTGTTTAGTCGGGTTAGGAATCGAAATTGGGTCATCCGCATGCAGGGA
ATATTCCCTCCAGATGCTTCACCAAGTGATTCCGCCGATTTGGAGGAACCAACTCGTTAT
TCGTCCATGAAAGCAAGGAAAAAAAGAAATAACCAAGCAATTCGCACCGCACTCACCCCC
GCACCCGAACAAAAGTTTTCGTGGTTATTGTTTTTGTGGTTATTTTTTGGTGGTTATTTT
TTGGTGGTTATTTTTTTCATTTTCGTGATTATTTTTTCATTTTCGTGATTATTTTTCATA
AATATTTGGTATGTGATCATATATTTTTATTTGCATGTGTTGAAAATAGAATGAAAATGT
TGGTGAAAATTTAAATTATAGGCTTATCAAATGCAAAGAACTCTATTTGTTCACAGATGT
AATCTCATCATTTATAGATTTTTCTCATTTCATCTCTCCAACTAAACACCGGGACGAAAC
CAACCCATGACATTTTTTATCATCAACTGAACACAAGGATGGAACCAACCCATGACTTTG
GAATGGAACCATGACATTCCATGACTTTTAGTCCTCAAACCAAACACACCCTAGTGTCTC
TCTAAGCCGGCGCGCCCACCGTCGATGGCGGTTGCGCCGTTCACGTGAGACGAGGTCCGC
GTGGCGGTCTTTGACCGCGATCGGACCAGTGTTCACGACCCAGATGGGATCGACCCCGCC
TTTCATCAAGCCGGCTGGCCGGCAGTCGCTGCGATCTTCAACACTTCTTCGACGAGGTCC
ACCAGGGGCGGCGTGTCTCATCGGGATTAAGACGGAGGGGGTGCCGGCCTCGAGGGATTT
CCGTCCCGTTTGACTCCAGAACAATGACGTGAAGATCCTCTGCCAGGGGCTCACCACTCG
GCTTCAGCGACAAATTGGCGGGCTCAGCGGCAAAGTAGAAGGCTTCAACTTTACGGCCCA
GAACAAGAAAACCAATCACAACGAAGGTACTCACGCGTAAAACATTTTCTACAAAGAAAT
CGCGACACACAGATTTTCTAAATAGCGCTCCAAAACTTTATACGGGTGTCTACCCTGAAA
AACACATCATGTCTATTCATAAAATATAGCCTTCCTTTTACACTGACCGTACTATGGCTA
TTTATATTGAGTATATAGCCGACCCATCTATCTAAGAGCATCTACACTCGTATATTACAA
ATATGACCTCCTAAACGCCATTGGTCGGACGCACCCCCTATTTATCCGTCCGCGTAGCCA
CATTCCTTATTTTCTTTCTTATATATCCGATCACTTGCACGTGATTGATGGAGAGAAAGA
GAGAGAGAAAAAAAAGAATGAATGAAGAAAAAAAAAGTTCAGGATGGGGCCGCGTCCTAT
GTGACGGAGTGACCAGACGCGGCACGGCATGTCCGCGAGCCCTCATATTCTCCCTATATT
TGAGATGGATATGAGGGTTCACGGACAACCCAAACATACAGGGATGATATGAGGGTTCCG
GTTGGATAACTTTTTTCCTTCTCTCTTCTGTTCGGTCACTAACTGAATACGTTCGCGAAC
GTATGAGAGGTAACCATATTTGAGAACGCATGGACAAGTTTCGGCTATATTTGAGACGTC
CGGATGTAGATGCGGTAACCATGACAAAACGCACGCAAGCTTTCCTCTCTATTTGTAACT
TCCAAACGGACACAGCTAAATATAGGAACCGACTCAATATTTTTCCTAAATAGAAATTTA
AACCTGACGACACAATATCCTCCCAATCTCTTCGAGGTGGGTCCCAACCAACAGAACACA
ATGAAAGGAGAGTGAATTTTCAGCACCCGGGTGCCTAGGCACCCTCTATGAACGGTAACA
CCGAAACAAATAGAAAAACATTCGAAAAAATCTGAAACTTTGCAAGATCAAAGATGATAA
AAAAAATTAGGTGCTTGCAAGTTTTCATGCCAAANNNNCATTTGAGGAGCTCTATACAGG
AAAAACATTTTCATAGTTTAAATTTTGAACACTTTTAGCACTAAATCTGAACCTTGTTTG
TACACCTTCGTCTACATGATATTTTGACATTAAAATTTGTAAGAACCTATAAAGTTTGAC
CATCTTATATGTTATCAAGTTTTAGATTTTTTTAAACTTTTATTTTTTTAATTTCACTGT
TTATAGAGGGTGTCTAGTCACGCGGGTGTTGTTACATCTTTCTCCAACAAAAGATATTCA
CGTACGTTGGGACTTCTCCTTGCATTTTTACGTGTCTTCTCTTTGCATGTAGAAAAATGA
ATAGCTCTCTATTTTTTATCTTTTTTTTTTGCGAAGCTATTTTTTTTTACCAGACCAATC
TGATCTCGTCTTAGTCTTTGCATCATAGTAGGACTCCTTTTCTTTCCATTATGCAACGGA
CGTCAGTGTTGCCTTGCAAAACTGAACACATCCATTGGAGTAATTGTTGGATATTTAGGG
TTTATGGTCTACTCCTATTCTTCCGCCCTTATCTGTGGTGTCGCTCACAATTCACTTATC
TCAGGCTAGGGGATAGGGGCCTTCTTATACCGTCTTTTCAAAGTGTCCACCTTTTATACA
GATATAGATTCCTAGTATTTTCCACTAGTTTCCGGGATAGAGTCCAGATCAAATTATCAA
CCACGATCATATTTGTGTGTTCCTGAAGCACAGGCATATGAGCAACGCGCCGTAATATAG
TTAAATTCCTCTAATTACATAGATCAATATTAGGGTTGTAATCTAACTACACGATCTAGC
TCCTTCCGATCTTCACTCCGTAATTAACTATTTTCAAAAATAATTCACAAAAAATTTCGT
CCAATTTCGGAAACTTTTTTTTGCACAAAAATAACATCAAGGTTGTTCTGCTGAAAACAG
CGTTAGTCNNNNNNNNNNNNNNNNAAATCATGCAAATTAGAGTCTAAAACTAGAGCAAAA
CTGTTTGGAAAAGTAGAGTGACATGATATGTCCAATATCAT