Map Locations of contig_42209 (9701 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_42209

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57916 1 1682 bp MLOC_57916.1 Available Available LOC_Os06g38940.2, FRAME:-3, EVALUE:0.0, 13106.m04035 protein RMD5 homolog A, putative, expressed





CDS Structure of MLOC_57916






Contig Sequence (9701 bp)

>contig_42209 9701 assembly3_WGSMorex_rbca.fasta
AAATCATGCATTTAAGAGATCAGAAGAAACTCAAANNNNNNNNNNNNNNNNTCTGATCAT
AAATCCACAATTGATCCCCTGAACCGAGGCCGCTTCCTACTAATGTGTTCATGCACGACC
AACACAACAGCCAAATCTTCATCATCCGATGATGAATCATCCTATGAGCAAATGAAGTTG
TGAAAGAAAAACTCATCACCGCTATCCATTGTACCTTGCGAGCAATCCGTCGAACGCCTT
GCGGTCATGCTGGCCGGCGTAGGTGGTGCACGTCATGCTCCCCTCGCAGGCGACGGCGGC
CGACCGGAGTACGTGGTGCTGGAGGGAGCCCTGTGGCAACGAACGACTGGACCGAGGAGG
TTTGGGACGGCGGGTGACGTCGGATGCCGTATCTATCTCTCCCACCGATGACAAAAGAAA
ACCCCGGCCAAATGCTTTCCGGAAAGCCGGTGCGAAGATAGCTAAGGCATGGCGTGGTGC
TTCGACGGCCTTTGTGGAAGACGATGCGGCCGGGGAGGGTGGCGCTGACGGCAATGCCGG
GGTGCGGAGGGAGGTAGAGAAAGAGAAGAAGGGGGGGAGGGGGGTCTGTGTCCCCGACGG
ACGGGCTAGGGCAGGACAAGGGTACGCGCCGCACGCGTCCGCGCGTGTCCGTTCGACCGT
AAACTCAGCCCAAACTTGAGCCTGAAATGGATCAAAAGCGAACAAAAAACGAAGGACGGC
CCGTTTACGGTCGCGCGTTGGAAGGTCTGCCTTGTCCGTTTACCATCAAATGGATGCGGA
TGGATAGGATGGGATCGCGCGTTAGAGTTGACCTAAACGTCGCCGCACCAACTGTATCTG
TCAACCAGTCCTGTCACTCTTCCTGTGGATCAAACCCACTAGAACTAATCTCACGATTCA
CACACCCCAATAGACAATGATGCTGAGGCGACCGACGAGGAGGACAAATAATGGAGGACG
GTCAGGCGAGCGGGCAGGCCCGCACTCACTGGCCGTCCAGCAGACAGGGGAGGGACAGGG
GGCCTGCCTGCGGCCGTCCCTGCGAGAAAGTGAGCACTTGGGCACGCTTTGGTTTGGGTT
ACTTCATCCGGCGCTTGCTTGCTTATTTAGGGGCTGAATTTCACTCGGGAAAAAGGATGG
CTCGTCTGAAGGTCCCTGGCTCATGTACATGTTGATGCCACAGAGTAAAGAATGCACTTG
TGCTGTACCGCGTGCATCACATAGGGACAGTCCAGCATGTAGCAGGGGCGCAGATCACAT
GGTTTTTCGGGTGCATCATTCATGTCCACAATCCGCTCGGAGCGCAGGTTCGGGCTATAC
TCGCTTGGCATGGCGCATCAGTAGTTCAGTACTGTACCATGTACGCGCAGGTACACCGTA
CGTACACTCGAGTACGAGTTGTTGAATGCTTCCAACAACGGACCTGCCTGCCTGCCTACA
CCTCGTGAGGCGGGCCCGGGCGGTTTCCTCGCGCGGATATGATGAGTACACCACGTCGTC
CTGGCCGTTGCTCGGTCGCTGCCGGCTGCCGCCTCGTGAGATGTCGGCGCCCGGTGGGAG
CGGGCTTGGCGCTCGAGGCTGCCCTCGAGCGTGCATGCATCTGGACGTCATGGTTAGGCC
GGCATGGGCATTGGCTTTGCCTGTTCCAACAACAACAAAAGCAAAAATGTTAGGCCAGCG
GCCAAGCCGCATTAATTTTGCTGGCCGTGTGTGCTGTGCGAGGGCCGTCGGTGATGGTCA
TAGCACGCATCGAACCATGCCCCGCGCCGTGACGCCGGAGGAGAGCGAGGAGTGGTGACT
GGTGAGTGTGCCGGCCTGAGGCAAAATTTGGCTGGCAAGACAAAAGAATTCCGTCGCCGG
GACTTGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTAACCACCTAGACTACGACGG
AGTTGTTGAAAAACTGCTGCCACACAGATTCTAATCCATTAGTAAAGATAACGAAAGCAA
ACTTTTTGTACCGTGCTGCTAGACCAGGCAGGAGTTGTTCGGCGGCGAGGAATATGGGTG
GAGGCGTGAACCGTGCTGCCACAGAGCTTCTAATCCATCACTTCGCCGCCACGCAATTGG
TCTGAACAACTCTCTCAGTAGACCCACTTCAGCAACTCTGAGCATCTCGGGACATTAATT
AATCTCTCACAAGAGAGGAGATGCTGTGCAGAGACCCTGTGCTCCAGTCCTGGATGCTTT
CCGTTGTGAATTTTGTGCCGTGAGATGCGTTTAGCAGGAGGTTTAGGCGCTTATAATCTG
CTACTCCCTCCATCTTACAATATAAGAGCGTTTTTAACAATAGGATGGAGGGAGTGGTAG
AAAAGAGTTGTCTCGCTACAAATGTCTGATTAAGCCTTTTTGAACTAATGAATGATGAAC
AATCGCAACCCCTTTCTTACAGCTTTCCCCTTCACATTGACCGCAGCCGAAAAACAATGC
ACATATGCATACCATATATAACTCCACAAACCAACCACGACAGCAAAGAATCTAAGCCAC
ATTGGTAATTTGCACCATGGGCAGAAAAACATGCAATTTTTCGTCTGGTGAAACGGTAAA
AGCCCGAAATCCCCCATAGCAGCAGCACCGGATTTTAACAGCGGACCAAGCCGGTAGCGA
CACACTTATTATCGCATTTATTCCCAAGAGACAATTTAGCATCGCATTTATTCCCAAGAG
ACAATTTAACGCACTGGAACTTGCTACTGTACAGATTAACATCCAGGCTTCAATAAAGGT
ACAAGGTTATAATACATGCAAACGATTGGACGAGCGAAACAGAAGCATGTTGTATAAACA
GTTTTGATCTGGGGAACAAAAAATGAAACATTTAAAACTGAAGCTGCTTGCACTGCGATG
CAACCGCCTCCGAGGGGCAGTACGGGCACTTGAAAGGCCTTGAGCTGCTCTTTGATAGCT
TCATGATCGACTGCTTCGATACGGCATGCCCACAGGGCATCAGCATCGGAGGGTTATCAT
CACTCGACTGCTCTCGGAGCACCGGGCACACAAAAACGGAGTGGTACTGGAACTCTGGTC
CGATGTCTATGGGGACTGGAAGCTGTTTCATGGCCTGCCACTCCTGCTTTTTGGCAGCCA
TCACCGTGCTTAGCTTCAACAAGGTTGGTAGTCCTTGAAAACCAGCTGATATAGCTACAC
TAAGTGGGCTGTCGCTAGACTGACCTAGGAGGCCGCAGAACTGATGGATTAGCTCCTCAG
CTAGCTTCTCCCAGTGCGTCGACGACACAAACTCAGCATATGGGGACTGATCAAGACGGT
CAGCCCAGATAAGGCAAGCCATTAGCTTCTGGATCTCTGCCGTGTGCAAGGAGGCAAAAG
GCACAAAGTGAGTCCTTGCATATTGTAAAGCATCATCTCTACTTCTTTTAGTAAGTATCT
CAATGAACTGAAGAGAATGGAGCTTCATCTCAAGCATTGAGCTATTCTGCAACAAGTGAT
CATGGTTCTTGGCAGCCCAATTGAGCGCAGGCTCAAGGTTTCTTGCTTGCATCGCTTCAA
GTATTCCGTACATCTCCTGAAATGGTAATTTCAGGTGAGTCCCATCTGATTCACCACATT
CATGGACAAAAGAGTCTCCAAGATCAAAGAGGCCCTGGCGGTAGAAATGATTCGTTATTA
TGTTGTTTACTGTACAGGCCTCATAATCCACATTTCTATATGCCTTCGCTATATCTGGAT
TGAAAGACTTCTCTAGGAGCTTGAGATATTTGCTCAGGGCAACATTCAATTCCTTTTGAC
ATCCTTCAAGTTGGATCAATGGCACAATTTCGTTCAGCTTGGCCTTCAGTTCTGCAAGGA
TGGATGAGTGGTCACAACTGTCCATCGTATCTGTATTCATCATCTGCATCTTCGATATTG
CCTGATTAACTTCATTCAATATCTGATCAATAGCTTCCTGAACTTTAGCAGAAGATGACA
CTCGCTTTTCAACAACTCGGTCAAATGCCTCTCTTAGACTGTCAATCTCCATTGCAGTGC
ACCCAACTAAGCAGCACCGTTTTGGCACTGCATGTACATGTCAAAAATCACATATACATA
AATAATTTGTTGAGAAAACCACCATGAAGCAAAACAAATTGAAAGACACGTAACATGTCT
TACTGCTAATAAATCAAAACAAAGAAATTAAAGGTAGGTTTATAACTTCAATAGTGTGAG
TAACCTATACCAGTGATCAAGAAGCAACAAGAAAAAAAAATACACAATCAGTATCACTAT
TCACTATAAAATTAAAACGCTATCAAATATTCAATTATCTCACTCAAGATGTACCACCCT
AAAGCCGTAATAGGTTAGCCAGATACTAACTGTATTAATATTATCTTAGGAACTCGCCAT
CAAGACACATACAAAATATGTGGTAAAAAGATCACAAATTCTCCTTAGGCTGCAGCACTA
GAGTAAATAGAAGGCAACAACATGTTATCAACTTATCATCGTCTAACAATTCACAAAAAA
ACTAAGAATGCCTAGGCTTACCACCTCAGAGCGGCGTGCAACTTTTTTCATCATGAATTG
ACATTCAATGCTTTATAACTATGTTGCCCATAATAAGTAAGTGGGTTCCATGAAATCAAT
TTGTCAAGGTGCCACATGCATCAGAAAATGTATGTATTGGCTCTTGATAGCATGGTTGCA
AACACAATATTTTATACATAGAAGGAAGAATTTTACTGCTCTCTCCCACACAGCCAATAG
GTTATTACAAGTTCATAAGTTGTAAACCTCCACGTACCAAAATAAATATGCCCACAAAGA
CGGCAAACCATGCACTCGGGAAAAGAATACCCCAGTGGTAGCTACATGACACCTCACGCA
GCTCACTATTAAGATATACTCCCTCCGTTCCTNAATATAAGACCTTTTAGAGATTGCATT
ATAAANTACATACGGATGTACATAGACATATTCTAGAGTGTAGATTCACTCATTTTGCTC
CGTATGTAGCTTTCTAATAAAATCTCTAAAAGGTCTTATATTTTGGAACGGAGGGAGTAC
TAAATATAATAAATCATATGTATTACATCTAGCCGCGCAATTCGCGAAGGTCACCCTGCT
AGTCAGTACTCAGTAGCATAATAGTGGCAGAATACTATTTTCTCCTAGTTACGTAATTGG
ATTTGTGATGATCGCTGATTTCACTCTTAATTAACTAAGCCAGAGTTAGAAAAAGATTGC
CTTGTTCTTGTTAAACCAAAGGATGGAACCAAGAAAGCATGGAGGAAATGCAGGCACACA
AAAATAACCTGACCCTCCCGAATCCACCACCCAAACCAGCCATGGGGCGAAACCTTAGGG
CATCACGCGCACATTCAACAAAACGCTACAAAGTTCCTCACGAACCACAGGATCCCCCAA
CCATCAGCACCACAGGGTCGACCAGATCTACAGCCCTAACCGCCACGGCTCGATCAAAAC
CCTAGACCTAAGCCAGATCGGTTAAGACCGGTGCAACAGGATCGATCCGGCCACCAGAGA
ACGAGGGGCCTAATGGAGGAGGGAGAGGAGAGGGGAGGCGGCGCACCGTCGCGGTTCTTG
TCGGAGATGCCCCGTGAAGGGAAGGTAGAGGTCGGGCGTTGCTGCTCGGGGCTCGCGGTG
GAGGAAAGGGACGGCTAAGGGAGGTTGCCAGCGTTGGGGCTCGTGGGTCGGCGACGGGAG
ATCGCCGGCGCTGTGCTCGGTGCTCGTGCTGGAGAGAAGAACCAGGACGAGCGGAGAGAG
AGGGCGGCGTGCGGTGTTGTCGTTGGATAAACTGAACCTCAACTTTTTTCTTTTCTTTTC
TTTCTTTCTTTGGGACGAAAAGAACGTCTGCTTGAAGTTGAGGGGGGGATAATTACAACT
GACCAAATCGCCATCACACTGACAATCAATACTACGATGATCTCCACTATAGTCGTCCTG
TGGCCCTGATCATCATAAATTATAAAGAATGTTTTATATTAAGTCTGAGAGATTTCATAT
CTAAAAATTATGGATATTGCTTGCGCTTCATCGCAAATCGATCGTGTGGAAGAGAAGTTT
CATCCGTCCTCATCCTCGTGCGGCTCACCTCCCCTTGATGCTAATGGTGTAGACACTCAT
ACGCTCATTGCATCGAAAAGCGCCAATTGATAATGGTCGTCGTCTGCAACTACCCATGCC
TCTTCGTGCCATGTTATCCCTCTGATCGCATTCTTTTACACAACACCCTTTTCGAGGCAT
GTTTTCCCGCTGCACCGCGTCCGCCGCTTATTTACGCCGCCCACGTATATAAAAAGGTCG
TCCCTCTCCATTTTCATCATGTCGCACAGAGCTTCTCTTTCTCTCTACTTTCCTCCACTT
TCACTATGTCGCTTCCCCTTCACGCGGATTGGGTTTCGTTGTCGAAAGAAGAGGAATGAC
TGCTCGAGGAGGAGGAAGCGGCAGAGGAAGTTTTGTCGGCGTTGCTAAGGAAGGTGAGTG
GGATCGCTATGACACGAAAAAAACTGCGCAGCAGGAGGATCCTACCCTTCTCAATAAGTG
GCAGGATTAGGATAGAAAAACACACACCATTGATTGGGACCTCAACCATGGCTATGAGCA
TACCTCGTATGGGAAAAGGAGACCTCACAACACCGCGTCCTAGCACGGGCTTTCCATCGC
CTCACTATTATGGAGGCATGGGATAAGTGGTACACTGTGTCGCATCGGCCTTCTGCCTCG
GCATCTTCGAGAAGACCGCCACTAGGAAGATGCTCACATCTGACAATAACATCGTTGTAT
GACTTCTTTATGATGAGACACGGATGGATTTCATGATGAAGTGGGAGTGTGTCAGATGGC
GCCAATTCGACGCCAATATAATACGATTTGAGGAGACGAATCACTCCATGTTGGGCCTTG
CACCGTTGAGGAAGCCGTCTTCGACCTCGACGACCGCACATGGGAGGAATGTGACGAAGA
TGAGGTCGTCGGACTATCATACAGCTACACATGAAGGACGAGTGGACTCAGTCTCATATA
CATTGCATATGTCGCGTGCATACCATTCATCATCGACGTGGAAGGAGCACCTAATGGCCC
CATCTAATGCGTCTCTCAATAGGTAAGAAACCATCAATGCTTACTAATACGAAAATGTGA
CCAATCAATTTTTCTACCCCCATGTAAGAACTTTGTAATGCAATGTTATCTCAAATTAGT
GTTTTAATCACTCAAATTATGTGTGTAATATTGAGTAGACGAAAAAATGAAGACGACCAA
TATATTGACTCTAACTTTGCGCATTGACTGAGTAGTCTTCATGTTATCATGAAGCCCACT
CCATATGCATTATGAAGGTCGTCTGACTTTATAGAGTTGCTCTTAATATTTTGCAAAACC
ACACATCCAGTATGTTGCGCCAAATTTCTTGACCACATATTTGTCGATCTGAGTCCGCCT
GGCAGGCCCCACATGGACTAGTTGTTCTATTTTAGATTCCCACGTGGACTAAAACATTTG
AAGCATGTCCATTCGCTTAGTTTGATCAATATCAAGGTTTTTGTCTCTAATTCTAAACCA
GCCTAGGCACCATCCATGCTTTTGAAGCACAATCTCATCCATTTGATGAACATTTAGTGG
TCCAATAATTTGCCTCCTAGTTTAGGAGATTGTTGTTAGAAACAAAGAGGGACTAATGTG
TTTGCTAGTGCACACGGAGTGAAAAAGTCCCTGGAGTCATGTGGAGTTCGGAACAAACTC
CGAACATGATCTCATGCAAGGCAACGAAGATTATTATCGAAGGTTTGCATGGCGAAGATG
ACCCCCAAGTTGTTGATGCAAAGCAATTGATTCAGTGTCCGTCTGAAGAAATGGACTACA
ACCGAGAAGTTTGAAGACGAAAAAAAAGACGTAGCATTCTCTTTCTTGGGTTATAGGGCC
ACCTTACTATTAAGAGGAGTGTAGTGTTCAAAACTTATGGTCTCTGGTGCTAAACCAAAA
CATGTGAGAGTTGAGGGAAATCTCTTCGTGTTCCGAATAAATACTTGCTAGGTAAAGAGG
CAGTTCTTCTTCACTTCGAGAGGTTTGATTCCAACCAAGAAGTTAGCATTACTTGTTCCT
CAAGTAATGTTACCATTGTGCGCAAATCCAACCCTTGGATACGTGAAGGTTGGGCATTGG
CTAGCTGTCATATCCAAAATGGTATTTCCCCTCGGTAAGACCAAGGTTATAAATAGCCAC
CCCTTCCAACGTGAATTGTTGGTTGCTCCATTTGATTTTAAGAAGATTGTGTGAACACAC
CTCTCTCATGTGATTTGAGTTTTAAATCCTTCGAGAGAAAAACATAGAGCCAAAAAATAG
ATAGTGGTTTAGCATCACTGTAATCTAAGTCTAGTAAGCTCCACCTATTACTCTTGAGAG
GTGCAACCTCTCTAGACGGTTAGGTCTCAAGTTATTTAGTGACCAAGAGTAATTGTGGTC
CACGGAGCAAAAGTCTATGGAGGTTATGGAGATCACCTCAAGATATACCCCTAGTGATCG
GCATTGGTTGACGAATTAGTTGTCAAGGGAAATAGGACAAAGAGAGTTTATCTTCTGTGT
AAAACCACAAGTCCCTCTGACTAGACGTAGCTCTTTTGTAGAAGAGTGAACTGGCCGAAC
AAATACCCTATCGCCATCGAGCATCACTGGTCATCCATGTACCCTATTTACTTTTGGTTC
TTTGTCATGAATTATGTTTCGACCATGTGATTCTTTCTTGATGGATGCTTTAGTTCTCCT
TTTGTACTTTTCACATTGGTAGACTTGTTCCTGCCTTGTTATTTTCGCTATTGTGTCTCA
GAGATTTGAAGCTTCCCAAAAGAAAACTTAAACCTGCCATTTGATACGTCCATTTTGCAT
CATAATTTCCTATTGTTATTTACAATGTTTTTTATCATTATGATGCAATATATATGTCTT
TTCTCTCTTAATTTGCAAGATTTACTGAAAGAGGGAAATTATCGATAACTCGAATTTTGG
ACCTAAAAGAGCTACAACACACATAGTTGTCCTCTCGAGCTCCAAATGACATGAAATTTT
GCGGAGGTTTATTTTGTAATATATAAAAGTTACTGGAGGAAAAAATACCACAGAAGATCA
ACCATGGGCCCACAAGGGTACGGGCGCGCCCTACCCCCGCCCCTAGGGCGCACCTTCCTC
CCTTGTTAAGCCCACGGGGCCCTCCGGTGCCCATCTTCATCTGTATGAAGCCATGTTTGC
TAAAAAAAGATAAGACTTTTGTGATGAAGTGCCACAGTCTCGAGGCGGAACCCGGGTAGG
AGCACTTTTGCTCTCCGACAGAGCGATTTCGCGGGGATACTTCCCTCCGGGAGGGGGAAA
TTGAAGCCTTCGTCATCACCAACACTCCTTTCACCGTGGGAGGACTCATCTCCATCAATA
TCTTCACCGACACCATCTCATCTCCAAACTCTAGTTCACCTCTTGTATTTAATCTTTGTC
CCAAAACCTTAAATTGGTACACGTGGGTTGCTAGTAGTGTTGATTACATCTTATAGTTGA
TGCTAGTTGGTTTAATTGGTGGAATGTCATATGTTTAGATTGTCAACCATATAATTATCT
CCTCTGATCATGAACATGAATATGCTTTGTGTGTAGTTCCATTTGTTCTTGGGGACATGG
GAGAAGTTGACTACCCGCAAGTGTGTTGGTTTCCCTCCAAG