Contig Data
morexGenes
Links



Map Locations of contig_42204 (5838 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_42204

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57908 2 2362 bp AK376599 Available Available None





CDS Structure of MLOC_57908






Contig Sequence (5838 bp)

>contig_42204 5838 assembly3_WGSMorex_rbca.fasta
ATAGCCAGGGTGCAACCCGACATGATAAGACATAAATGCCACAATGATATGACCGTTATG
TGGATAGGATTTTGGGGACAACTAGCGTGAAGCACAGCAACGGCCGGAATTTCAAACTAT
GAAAATCCTCAGATCTAACTTGTAGGCAATTCGCACTCGCGAAATCCTAACTCCTTAGTC
AGAGCAATTTCCTCAGAGACCAGAAGAACTTCGTCTCTGTCACTCAATAATTTGACTCAA
TTGCAAGAGATTTCCAAAGGCTTCAGTCCAAAGATTGGTTATGTGTAGGTTTTGCGATGA
GCATCACCTAGAAATTTTTCCTTAGTATTACCTCGACCCCCTTTGACGGTACAGTGTTTC
TATGACTCAAAAGAAAGGAAACGTAACTATGAAAACAAAAGTCTTCATGCTTCATAGTCC
TCGCATCAATATTTTCAAGGACACACCAATTTCCTCACTTTCAAAGTCTTCAGGAAAATA
TCAAAGTCTTCAGTTGAAGACATNNATTTTTAGGGGTCGATATTCCTCGAACATATCAAA
CTCCTCAATGACTTATAGAGCATGTGTACACTCACAAACATAGTAGTCCCTTAACCTATA
TGTCTCCAATACACGAAAGTCACTAAAGGGCACTAGATGTACTTATAGTAAGGGACTGAT
TGCTAATGCACACAGTGAGAAAGAGTCCCATATGTATAGAGAATAATGTCACATTGTGCA
AGAAGGTTGAAAAAATTCATCGAGAGATATATTCTTTGCAGAGAAGAGAGAGTTATGTTT
CGAGAAGGAACTAAACCGAGAAGATTGGGTGAAGAAGTTGACCCCTTAAATATTGATGAC
ACAAAGCAATTGCTATTTGGTGTGTCCAAAGAAGAATGACTTGAAACGAGAAGGTTGAAT
AAGAAGCAAAGACATAGTATTTGTTTCGTTGTTGTTCTTTCTTTTCATTAAGTCATAGGA
ACTCTGTACTATCAAGAGGGGTATATGTATTCAAAGCTTAGGTCTGTTGTGATGCTTAGC
AGAATCCTATGAAATTTGAGAGAAACCTCTTTGTGCACCAAAAGTTTAGTGGCCATCCAG
ATACGTTCTTCTTCTGGCCCGCGAGAGATATCTTACAACCGAGGAGTCAACTTTACTTGT
TTGTCAAGTAAAGTTGCCATGTGCTCAAAATCCGACTGTTGGAAACGTGTTGGTTGGCCA
TTGGCTCGACCACATGTCCTAAATGGTCATTTCCCATCAGGGAAGGTTGTGGCTATATAT
TGCCACCCCTCTCTAACGTCTTTCATTGGCTGCTCCGATTAAGATTATGAGAAGATTGAT
TGAGCATCCCTCTCGAGAGATTTAAGTTTAACATCCACTACGAGAAAATCAAGAGCTAAA
ACTTAGATAGTGGTTGAGCATGACAGTAGATCTGAGTTGAGAGTTCTTGTACCTATTACT
CTTGAGACTTGCACACTCTCTAGACGAATATATGTCGACTTGAGTGAGGAAGACTAATTG
TCCTCACCAAGTCAAAGTCTTCCACAACCAAGAGTAATTATGGTTCATGAAGCAAGTCTG
TCGAAGGTTTGGAGTTCGCCGACAAGTATCTACCCCGAGTGAAATCAACAAAAGTCCGAC
CAGCTTCGTGTTGAATGAGAATAGGACAGAGAGATGTTTACTATTGTGTTCAATCAAAAG
TCCCTCCAACTAGACGTAGCTCTTTTGCAAAAGAGTGAACTGGTCTACCAAATCATCTCT
CGCCATCGAGCACCACTAGTTCATCCTATTCTACTGCAATATTCTCAGTAGTTTATCTTC
AATTACTATTGAATGATTTCCTCTCGCATCTGAACAGTCATGTTGCTTGGGATGTTTTCT
TTTTTGTGTCACTATTGTTTACATGAACATCCTTAGTTACTATGCTAATCAGATTATCAT
TGTCATCATCAATTGTTTCGCTTAGTCCTTTGCATCTAACTCTTTTTCCTTTCTAGTAGC
CACACCCATTTACCTTCAGTGGACATGCTCCTGTATTTTTCTTCCCTGCAGGGTCTGAGG
TATTTGAAGTTTTAAAATAAAATTTGAATCTCACATTCACCCCCCTTTGGTCGATATACT
CTCAGTCCTTACACAAAACCCACAACACGCCTAGACGGGACTCAAGCGCCTTCGCCGCTA
CCAAAGTCCACACCAAATACCGTTGTATCAATACAGGCTTCCACAAGCATATCCGTGAAT
CCCAACAACATCGAAGAAGAACCCTGTGTAAGATCTCATACGTCACTTCCATTCCACGAG
GTTGACTAACATAACATGTCTGACACACCTTGTATGAAGGGTCCTTCTGCTGCTCTCACG
GAGATGTCACGTAAGCCGCCGCCAACCACCTCTTCGAGCACTACGTCCCTTTGACTAAGT
CCAACTTCAAGACTATGTCCTCAAGAGGAAACACGATGCACAACAAAGCCAATAGTGTCG
TTGTCGTCCGATCCGGGAGACCGGATCTAGGGTTTCCCTTGAAGCATGTCGGGCAAGGGA
AGAGGAGGACTGCAACATCGATGGCTCCAACAAGGGGACATTGCACATAGGCGCAACCAT
CAACTCATGTGGTCTCAACCAAAGTGCAGCTTCCACCAGCAGCCTCACCTGCTCAAACCA
ATGACTTAGCCAACCCTTTCGACATACCACCTCCATGACGCACGAGCACTGCTTCACATT
TCGCTCTCACATCGTGAACCGAAGGTCGCCGACCAGCCACCTCGACAGATATGCCTCGGG
GATGCCATACACCCGTCACATGAGTAGGTTCGCTGAAAACCCAGATCAGGCTCAACACCT
GCACTCCACGCGTGGGGCACTCCACGCCTGGGAGCAAGACACTTCTGTAATGCCCACACA
CGTCTCCGCTGCCCTGGTGCGCCATCCCGCGCACACACGATAGCCCAAGCCGCCGCGTCC
ATGCACATCAGATCCACGTGCGTCCGCACAACACCAGGCCAAGACGCACTCACTCGCGCC
TCCACCCTTGCCCACTAGTCCGCGACGCGTTTGCGCACTCACCCGCATCGCCAAGCACCT
CCTCATCCCAGTCGAGCAGCCCCACGCAACTCTTGCACCACGCAAGAGTGAAGAATAAAG
GCCCATCACCGCGTCGCGCGGGCTTTGCCAGTAGGGTTGAACGACATTTGGCGGCTAGGG
TTTCACGCCCTGATCGCCCCGCGGATGAACGGGGGATGGGCGAGTATTCAAAGTTAGCTC
CGAGATATGTTTGGTTTGGTATTCCTCTCCCACATTTATATTCCTTTGAACCTTGAAGTT
TGAATAAAGTGTGATATTCCTTGAGAAAAAGATACGGAGGTTTTACTGCACTTTGTCTGC
GTTGAATTAAGAATATATTTTTGTAAAAAATACAAGACAAAAGCTCCTAGCTGTTTGGTT
TTGTCCGTAGAACCCCACAAGGCCACCCACCGGCTACAGTGTCAGTCCCACACCCACAAA
GCCCCAAAGTCCAAAGGGAAGTGAGAGGAATCAATCCCATACCCACATAGCCTCCCTCAC
CACCCCTCTCGCTCTTCCCCGATTCTTCCGCCGATTTCTCCTCCGTCTCCTTCTCCACTG
CCCAGTCTCCCACTTCACTCTCTCCATCATCCCTTTGCAGCTTGGCTGCTTCAGCATTGC
CATAGATCAAGCTACTCCCCAAGAAACGAAGAAAAAGCTGTGGCAACACCCGTGCACTTC
ACTCGGAAAGCAGAGCAGATCGAGCCAGAGCGCACAGCCGCTCCACCGATGAAGCCCGCC
ACCGTGAGGAAAGACGCTGGCGGCGGCATTGGCGGTGGCGCGTTCGGCGTATCGTGCCTC
GACATTAAATCCTTCGTCGCCTCCCTCGCTCTCTTCGCCCTCATCATGGCGCTCTGGCAG
TTCCACCCGTACCAGCCCATCCTCGCCATCACCCGCTCCTCCTGTCCCCTCATCCCTCCC
CCATCTACCGCCGCCGCCTCCACCACCATCACCACCGCTGCAGTATCCTTCTCCAACTCC
ACAGCCGACAGAGCCGCACCGACCACCGCCGCCAGCGCGGTAAAGGCGCCAACCTTGCCA
TCCCGGCCGCGGGACCCCAATAAGCGGGAGCTCCGGCCGTACGGCAGCGCGGCGGCGCTG
TTCGTGCAGATGGGCGCGTACCGGGGCGGGCCGCGCACATTCGCCATCGTGGGGCTGGCG
TCCAAGCCGGCGCACGTCTTCAGCACCCCTTACTTCAAGTGCGAGTGGCTCCCCAACCCG
GCCCCGGCCGGCGGCCCGCCGCCGAGGCCCGTCCGGACCAAGGCGTACAAGATGCTGCCC
GACTGGGGCTACGGCCGCGTCTACACCACCGTCGTCGTCAACTGCACGTTCCCGTCCAAC
CCCAACGCCGGCAACCGCGGCGGGAAGCTCCTCGTCCACGCTTACTACTCCACCTCCTCC
CGCCGGTACGAGCGCTTCGTCACGCTCGAGGAAGCGCCGGGGTCGTACGACGGGTCCCGC
TTCCGGCCGCCGTTCCCCTACGAGTACCTCTACTGCGGCTCCTCGCTCTATGGCAACATC
AGCGCCCCGCGCATGCGGGAGTGGCTGGCCTACCACGCCCATTTCTTCGGCCCAAGGTCG
CACTTTGTTCTCCATGACGCCGGAGGCGTCAGCCCGGCGGTCAGGGCGGTGCTGGATCCG
TGGGTGAGGGCCGGCCGGGTCACTCTCCAGGACATCAGGGCGCAAGCGGAGTACGACGGG
TACTACTACAACCAGTTCTTGGTGGTGAACGACTGCCTCCACCGGCACCGCCACGCCGCG
AACTGGACCTTCTTCTTCGACGTCGACGAGTACATCTACCTCCCCGACGGGCGGCCGCTG
GAGGAGGTGCTCGGCCAGCTCGAGCGGTACACGCAGTTCACCATTGAGCAGAACCCCATG
TCCAGCAAGCTCTGCGTGGAGGAACCGACCAAGGAATACTCGAGGTCTGCTTTCCTCCCT
CTGCCTTAGCCTTATCTATGTTATAAATTGTTGCTGCAATTGTTTATGCCTGTTGATATT
CCCGTTGAAATCCAACAAAGATTCGTGCAATACAATACTGCAATCGGAGCAAGATATCCC
TGTTTACCGGATAGTATTCCTGGAATCCAGTGAGTGTCCACAGAACTTGCAATGTATCCA
GTCACTGTCAATTTGTTTTTTGTCAGCACACATGCTTCAAGAACCTAGACTGTGAGTCAT
GACGCTAGTTTATGCGTTAGGTTGATTTTGGGCAGTGTGACTGTTTTGTTCCTTGCTGAG
TTGAAGGCGCTTTGACCTTGGTCCGTTGCCATAAGCTATTTGTGGGATTTTCTGAATTAA
GCCCAATCCTACATCAAATACTGCTTGCCAGCTTGGGGCTACTTTTCTGAGTTACTCTTT
TGTTTTCTGACAGTGAACCTAAAATAGTGCATCTTCTGTTTGGGGGTAGAGTCACTGAAT
AAGCAAGTTTAAAAAAAAAAAAAAAGGAACAAGTGTGAATCTTGAAGCAAATAGTCGATG
AATAGTTCAAAAGAAACAACTGCAAATCTTAAAGTAAATGGTTGATGAATAGTTGCATTC
TCATGGCGATGAGAGGCAATCAGGGGTGAGTATTACATGGGTGAAACCAGCATCCTGCAC
AAATGAAAGACATGAGGAGCAGCCGGCTTCAGCTACTCCTGAATGGTGTGTGCACTAGAC
CTGCAACGGCTTGGTTGGGGCCTCCAGCTTTAGATGTTAGGTTTTGGTGCGAGGTCTGTT
TGGTATTCGGCTCGGACTTTCGGCACACCTTCATCAAGGATAGGAGTAGCGACAGATGTT
GCCAAGGTGGCGGATTCA