Contig Data
morexGenes
Links



Map Locations of contig_42195 (5052 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_42195

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57898 2 840 bp MLOC_57898.2 Available Available LOC_Os02g15710.1, FRAME:+2, EVALUE:1e-43, 13102.m01752 protein plastocyanin-like domain containing protein, putative





CDS Structure of MLOC_57898






Contig Sequence (5052 bp)

>contig_42195 5052 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCTCCGCCTCTGGACGAAGGCACGTGTAGGTGTTGCCAATGCCGGT
CATGCATAGACGAACGAAGTCGATGTGATGAGGCATCACGCTAGGCTTGCTAGGCCCGGA
GACACGTCATGGACGAAGTCAACATGAGTAGATGGGACCTGTATGAATTGTATGTCATGT
CGGAGGAACCAATACATGACTCGATTCATACTCTCCGTCAGCGCGGACCCAGAACAATAA
TCTCCCGGTATTCACATATAGACCATACAGGATGGATATCAAACACTAGTATACATAAAA
ATGACACACCCGTCTTTTTTGTATGGGAAAAATAACACAATACACAACTTAAAATATCTG
ATGGTAAAAATTCTTAGTAAAATAAAGTGTTTGACTTGAAAAACTAGTTGATTATGTGAA
GTTGAAGAATTGAAATTTCAAGCAGTAAAAGAAATGTGATCGGTGACAGCAAGATATTTC
CCTTGTAGTTCACCGATTCTTATGTATAGCAAGTGCTCGGCGAGTTACATCATCTGTGTT
TGTCAATGGAAGAACATAACCAATAAATAAAGCATACTGATTGAATACGAAGGTAAACTA
ACTGGACATTGCATCTTACTACCGCCGCATACGGTGGAGCAAAAATTACAATCATATGTG
AATTACTAAGGAAAGTTGTCAAGTCGCAGCAATCTGATTCTCAATTATAACACCCTTAAA
TTTGATAACGCTAGACTTATAGTTTAGATAATAGTTAATGAAAGTAAAGATATATAAGCG
TGCTTGAATGAAATTTATGAGCTTACAGGGAACTATAACTATTTACCTTGGATTATTTAG
CAACCTACATGGGGTAGAGGACAAGGGCAGGAGCGGACGGCTGGCGGCGGCTGAACGGGC
GAGGGAAGTAGCGGACGTCTGGCGACGGCTAAGCGAGCGACGGCGCGATGAGGAGAGACG
AGAGGACAACAACCGAAACGCAGACGTTAGGAGGTCGAGGATGGTCGGGGTGGGCCATGA
TACACCTGAGATTTCAAAATACCTTTAATATCATAGAAGAAAGGTGATAAAATAAAAGAA
AATTAATAAATATATGTGTACAGTAACATTGCTGTCCCATCGTGATCTAGTGGGCTAGGT
CCGCTACTCGTTACGCACGTACATACAACACATAGTTCCGATCTAATCGATCGATAGCTA
GCTAGCAAGCACACCAACGGACGGCTGGATGAGCACCTATTACTAGATGGGCCAACCGGC
AACCAGAGCTTGCTCCAAACATCGTCTGACCGGTGTCCAGTTGTAAGAGCATCTCCAACA
ACACGTCAAATAAAGCGTGTGTGTGAAAAACAAAGCTTTTAGCGCGTCGGACGTGCGCGC
TTGAGCAGACGCGGGAAAAAGTGGCGCGTAAAAAGAACGGACACACGCGGGAAAAAGCGG
GGGTGCACGCGATAGTTCTGGCGCGTGTTGACGCGCGCACTCTATAAATCCAGCGCCCTT
CCATGCGCCCTCTCCATCGCTCTGCCTCGCCACGCGCCCTTTCCGTCGCTCTTTCTCGCC
AAACTTCTTTTTTCTCGCCTCGCAGCCGTCGTGCCAACGGAAAATTCGGGCTACCATGGC
ATCCGTGCGGGGCCCTCCGGCGTCTTCTACGTCGAGATCCACTCCGGTGAGACGCGCCTC
ACCCTCGACACATTCAACACCGCCCACGTGGCAGCCCTCGCGTACGACACGGCGGCGTGG
CGCCTCCGGCGTCTTTGTAGGGAGATGAACTTCCCTAAGGTGGCGACACGTGAGCGGGCG
CGAGCTCGTGCCTTCCCCGCGGCTTGTCACCGACGAGGACCGTCGCAAGAATCGAAGGCG
GGAGCACCACCTCGGCATCGCTGAGATGGACGAGGAGGCCATGGCAGTGTGGCGCCAACA
CTTTCCTAAGGACGTCATCAACGAGCGCAAATTCTACGCGCAAAGGAGAGCGTAGCGAGC
TGCCTACCGCGAGGACATGCGTACGCGGAAGGAGGCCGCACTCTTCAACATCGAGCCAAA
GAAGCGTCGATCTGGGATGACGACGATGAGCGGTGGAATGACGCCTTCATTATGGCCTTG
GAGTCGGAGGACACCACCGAGTCGAAGGAGGACGACGAGAAGTAGTTTAGCCATCGGCTT
TTCTATCGTTTGTGTGAACTTGTTTGTCATAAACTTGCTAGTGGTTAATCTTGTTTGTGC
GAACTTTGCATATTTTGGATGTTTGAGATCATTTTGTATGTGTTGTTTGTGCGCCGACGG
CATAACATGCTCGATTTTATAGCGTCTGCTGAAACGGTACGCTGGTGCTAAAAATTTACA
GCGCGTACTGAAGCAACTCCTTACTCAAGCAAAAAATGACCGTTGCACGTTACTATAAAA
AATTGTGTACCATGCTTCGCGTTTGTTGGAGATGCTCTAAGTTTTACCTGTATCAAAGTC
CAAAACTTTGGCTATATAATGTGCCCGCAATTTCTACCCGGTGTCCTATGACATCGGTTG
TCACCACGTAGGTACTCCGGAAGTAATGAGATCCTTCCATTCAACACTTGATGGTACTTT
TCATAATTAACATGATCCTTCTGTTTTAAAATTGTGTTGAAGTCTTTAGAAGTAGAACTA
ATTCCAACGATATACCAACTCCCCAGTGGCAGCATCTTCTTGGTGAGTCTCATAGGTTTT
TCCCTCTAAGCTAGGTTCTCTCGTATCTCATCGGACTTACCTCTTTGTTGAACAAGTCCA
AATTCTTATACAAACCAAACACGTTAAAAAAATTCTACTCATCATAACTCATTCGTACTT
CAATTATCTAAAATTTGTTGTCAATTTCAACTGATTTGACTAGACGATCACAAATCATGG
CATCTGATCATCCTTTAGCTGCTATGGTTTTAAAGTTCACTTTACCGACTTCTCGGTATT
AGAAATGATTTTGTATTCCAAAGTTAAGGTTATTACAAATATATCATCTAATACTAGTAT
ATATGAATACCCGATATGCAACTAATGCATCCAAGAAAAAAATTATTTACTAAATCTCAA
AAGTAGGAAAATAAATGCATCCTTGTTCATTTCAATTAATACTAGATCGAATTGTATAAG
TTGGAGGATTTGGTAGAATATACTAACTAATGTCGGATATCATAATTGTTGATTTTCTCA
TTTAAAGGACGATTCTCATTATTTGAGCGCATTAAAACAATGATCTTAGCTGACCACTTT
AAAAGCATATATATATGATACGAGAAAGAGATCGAGCACAAGCCATCACTTGAGGAAGCG
ACTACAATTTCTCTTTGTTGCTCTTGTGATCTTCCGTAGCGACAAGAAGTCAAGGGCAAC
ACCTTCGATGGCACGAGGAACCATCATACCCACCCTTCAACTGTTGCTTCTCGCCGTTTG
CTGCGCAACCACCGTTGTGCATGGCAAGGAGTGGACTGTTGGTGACAGCAAGGGATGGAC
CTTCGGTGTCTCCGGTTGGGAGAGGGCAAAGCGCATCCAATCCGGTGACGTGCTTGGTGA
GAACTCTAAAGACCAAGTGATTAGCTATTCTTGATGTATGTATATATGAAGGAATATACG
TTTTGATCTTTATTCTTGTGTTAACTAATGCATGTAGTGTTCAAGTACAACCCGAGTATG
CACAACGTGGTGCAGGTGGGAGAAGGTGACTACAACTCATGCAAGGTCTCTGGCCCGTCA
AGGACCCACACCTCCGGCAATGACCATATCAAGCTCGCCCCCGGTGGCAAAGCGTTCTTC
ATATGCAGTTTTCCAGGTCACTGCCAGCAAGGCATGAAGATCGCTGTCACTGCTTAATGT
GTCCCTTTTAGGGGTAGAGATTATTTGAGACGAATCGCAAAAGTGCAATACATCGCTCAA
TTAATGTTATTTTGAAATCATCGTTCCTCACTTAACCAATGTTATTTTGAAATCATCCTA
CCTTGCTTAATCAATCTTATTCTGAAATTATCATTCCACTAAAACAGTAGAGAGAATACC
ATTCTTCAAAGATGGTAACCACCGGACATCGAGATGAACACAACAATCAGATATTTCATG
TGCATATATTTGACACAGAAGATACTCCATTCGTCTCAAAACAAATGACTTAAATTTATA
CTATCTTTAGTATAAAGTTGTATTAAATTTGAGACATTTATTTTGAAAAGAGTATAAGTA
GACATCTCGTGCTACATGTTTTCGTCGATAGCCACTCTCCGAGTCCCCTTAACAAGCTTT
CTGGTCAATCTTGTGTTTTGCGCATGGCAGCAGTGCGTGGGTGAGACAAGTTGGAGTAAA
TCTAGGATGGACCTATCTAAAACGTGTGTTGCGAAAAGAATTATACATATCCGTTATACA
CAGGGCATCACAACGTGTCGACGTGGTTCCCCCGATCCCTCGACGCATTCATCTTGGTTG
TTGCCTGCTGAACCCTGCTGCCAAGATGGCAAGATGCCGTTGTCAAATTATTTTCTGGTC
TTGCCTGTGTGATAGTGTGAATAACATAGGGCGTTAGATTGGCTATTTCGTTCATTGCTA
GAAATAAAAAAATTCACATATTTTGTAAATAAAATTTAGCAATGGGCGGTGTATGTGAGA
CCCTCGACAAGTGCTGCTAACTCCCCATCATCATCATTAAACATAACCTCTGTTGGAAAT
ACGAACAATTTATCATAGGATTTTATTAACAAAATATGTAGATAAAACATGACTATCATA
ATAGAGATGAAACAAGGCAGGTAATATAAAGATGAGATATCGAAAGGCATGTGCACATAT
GATCTAGAAGTGACATATGTAGATCCGTTCTATACACGCAAGAAGGCATCTGAAAAGATG
AATAGAAACGGAACATATCTAGAAGAGAAACTAGAGCAAGAAGTTGCAGCAGGAACTCAA
ACGAAAAGAACAGGAGCACGTACTGAGTTGCAGCAGCAGCAGGGTTCGTGTTGGCGTTGT
CAGTAGCCATGTTACTGAAGAGGTGGTCGACGTCGGGGAAGTGGTCGTCGATGTCCGTGA
TGGAAGCCAGTA