Map Locations of contig_42181 (6556 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_42181

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57885 1 772 bp MLOC_57885.1 Available Available None
MLOC_57884 1 1496 bp AK370755 Available Available None





CDS Structure of MLOC_57885






CDS Structure of MLOC_57884






Contig Sequence (6556 bp)

>contig_42181 6556 assembly3_WGSMorex_rbca.fasta
CCGCCGCGGCGCGCCCCCGCCCGCCCCGGCCTCGCAGGGGCCGCTCGCGCGACCAAAGGC
GGCCGTCGGCCGCCGGTGGGAAGCGGTGGCCAGCTTCCAGCGCGCGCTGGAGCTGAAGTG
CCGGTTCCTGGGTGCAGGCAGTGCGGAGCTGGGCGATGCTTACAGGGAAGTCGCCGAGGC
CTACGCCGGGGTGTTGTGTTTCGATAAGGCGCTGCCGTTGTGTCTGAAGGCGTTGGATAT
TGCAGAGAAGCGGTCCGGTGAGGGCTCCGCGGAGGCGGCTAAGGTCCGAAGGATCCTCGT
GGTTGCTTATACCGGGCTGGGTCGCCATGAGGAGGCGTTGGAGCAGAATGAGCTTGTTAG
GATGGAGTATGAGAGGTTGGGGATGGATGCAGAGCTTTCGCTGGTTGAAATCGACGGGGC
CAGCCTGCGTATTATGTTGGGGAGAACAGAGGCTGCGATGAATGACCTTAAGAAGGTGAT
GAAGCGGGCTAGCAAGGATAGCGAGGAGCGTGCGCTAGCGTTTGTCGCGATGGCGAAGGT
TTTGTGCTCCGAGGAGAGGTCCAGTGACTCGAGACGGTGCTTGGAGATTGCTCGTGAGAC
TCTTGATGCAAAGCGTTCTGTAAACACTGAACGGGTCGCTGGGGCATACACCGAGATATC
GATGTTGTATGAGTCAATGAATGAATTCGAGATGTCTTTGTGTTTGATGAAGAAAACACT
TGCGTTTCTTGAGGGTGCCTCAGGGATGGAGCACATTCAGGGGAGCATCTCTGCAAGGAT
GGGTTTTCTCCTCCTGCTGACAAAACGAATTGATGAGTCTGTTCCTTTTCTGGAGAAAGC
TGTTGAGAAGTTGAAGAACTGCTTTGGACCAGCGCATTTTGGGTTAGGATTTGCTTACAA
GCATCTGGGCGAAGCGTATATTGAAATGGGCCAACCGGAATCATCTATTAAGTTCTTTGA
ACTTGCAAGTGACATCATTAATGCTGCATTTGGGCCGAAACATGAGGATTCCATTGAGAT
CCTTCAGTGCATTGCAAATGCATATGGACTGATGGGGAGGTAATTTCTTTTGCCCTTTTC
ATATTTACTAGTCTTTGAAATAAAGATGCTGCTATCCTGTATAGTTGCCTGTAGGCTATT
AAGTTATCCAGAGTTTATCTATGAAACTGAAGGCAGCATGGGATGTCTCAGTTGAAGTAC
TACACTCCTGCTCTGCCGTCGTAGAAACTGACTGAGCGATTTTTAGATAGTGTCAGAAAT
ATCATCAACATTCTATATGTGTTATGTTGTGCAGCACATTCAGTAGCATTTCATTTGGTT
TTCCTATATATGAAGTAATTGAGCAACTATATGGTGTAGTGCCAATTATGAATAGTAGGT
CATTATGCAACCACTGCTGCAGTTGTTATTTGCATAGAAGAGTCTCCGGAAGTCCTGCTG
TTGGTGCTTGCAAAATAATAATAATAATAATAAAAATAATAAACTTTGCCTGCAGACTTT
TTCTTTCCATATCATTCTGGTGGTAGCATAGATGAAATATAGAAAGAAAAAAAAAGTTTA
GTTGTTTCCTAATACAGAAAGGGACAGCCCTACATTGAGATAGAAAATAACTGTACACAA
TTAGAAGGGAAATCCTGCTTACAGCACAGTTTAACCTTATAAACCCGAAAGTGTAAACTC
AAGCTTGGCCAAGTAAGGATGTAGTGCTGAACTGTTACGAAAGGTACGAGTCATGACAGC
TTGAATTGTAACCTATACTATTTTAATTATAATTGATCTTTCTCAAGCACACTCCATGCA
TACCTGCAGATATGGATGGATTTCCCATTTATTAGCAAATATAACACTCTTGTATGGAAA
ACTGAAGATCCCATGTTTGGTGCTTTATGCCTTTATGAATTATGACTAATGAATGAATGT
GAAACTATATTGAAGTTGCACTATCTGTTAGGTAATGCTTGTTCTGTTGGTTTGTGTGAT
ACTGTTAGCATTTTGCTGAATTGAACTCCCTCCTAGTGTGGCCCATGTACATGGTAAAAA
GCAGATGCTGCATTAATTAGCATATGCATTGTTGAGCAGTCAGTTATTTGATTGCTGACT
TAAATTTATGTTTTGTCGGTTAGGTCTGTTATGGAACAACTGGATGCAATTTTCCGACCA
TGTTCTAACGATTTATAGTAAAGCACTTCTTATATATGTCGTGGATACCCGTGTCGCTAT
TTTACTTTTGATACTGCTTCTTATTGCAGTTACAAGAATGCCATGGATTTTCAACAACGA
GTTATAGATGCTTATGAAAGCTGTGGCCCTAGTTCGAACTATGAGATACGAGAAGCTCAT
AGGCTTCTAGAGCAGATAAGGAAGAAGGCGGAAGGGTCACGTTCTGCAGTGTTTCCTGCA
AATACATTGCCCGTGCTTCCTGAAAACCGATAATGCCTCTCCTGGCATCTGTTTGATGAA
GACGACTCAGTGGTAAACTAAGATTTCATCGGCGACCCTCTCAGGTCTTTTAACTACTAT
TTTGGCGCCCAATGTCATTATGTGGTTAATTTACTTACCAATGGAATTATATGTGTCACG
TCTAGCATTTGGGAAGACAGAGCATGCAGATTATCCACCTTCAGATTATAGGTAGCAAGT
ATGATTGTACACAGTTTTCATCAATATCACTTGAAGAATGTTTCGATGTATTTTCTGATT
TCATGGGCATTTTGTCACAGAATTATTTCTGGTTGGACTGGATTGACAATATTTAGTTAC
TATTCCGACCATATAGACATACTTCACAAGTTCACAGTGTAGATTCATTTATTTTGCTCC
GTATGTAGTCCGTAGTAGAAAGACTTATATTTAGGAACGGAGGGAGTAAAAGAGTATTTC
ATGAAAGTCGCAGATAAACATCACTCACGGGCTTGGTTGGGTGCTGTGACTATATCATTC
ACATCTGCCCCCAGAATTTTCTGTTGTTTTAAGCATACCTGCCCAGTTCCTAATTGCCTG
CAGGAGTGCGGTTGTATTAGGTTGTGCATCACGCATGTTGATTCACTGTGCTCAGCTATT
GCCAAATACCCCCTCCGTTCCTAAATATNNNNNNNNNNNNNNATTTCACTAGAAGTCTAC
ATACGGAGCAAAATAAACGCATCTACACTCTAAAATATGTCTATNNNNNNNNNTATGTAG
TCCATTAATGAAACCTCTTTAANNNNNTATATTTAGGAACAGATGGAGTAGTTTGGTAGG
TAGATACATTTTTGTTTCACTCATATGTACAATTATGAGGCCCATATTATAATTTTGTTT
CTCCTCAACTGAAGCTCATATGTGCTACCCAATATAGGCCACCATTTTAGTATTCTGCGT
TGTGCATTGTAACCAGATGCGCCAAATTCACCCATGTAGCTTGTCTTTTATAGAAGATTA
TGCTATATGATAACTGCTACAGTATGTTTCAAACAACAATGTTTCTACGAAACTTGGTAG
ATCTGGATGACTTTTGCAGGCATTGCGCAGCACATTCTTGGTGCATCGGAAATTTGGGCT
TCTGCACTTTGGTGTTTTGCAAATTTATACTGGTGGTATTCATCATTGGGCTTTCAGTTT
AATGAAATTGATGGCAACTGGATGTATGTGCAAGTTGGAGATGTCAGGTGGTAGTGCCGA
CAGTTTTGCAGCGACCCACCCATTGATTACGTAATTCTGTTATCCAGCAATGATGTCTTC
ATGGAAATGCCAAATGAGTGCACGATCCTTGCAATGGTGGGACTGGCCTTGCAATGGTGG
GACTGGCCAAAGGACCAAGGAACAGAAAGAATCCCATTAATCATCAGCATGTGCATCCAT
TAAGATTTGAGTTATGCAAGGCTGGTAATCTCACATCTTTTTTGTTTTTGAAACGGAGGC
ACAAGATTTGTCTCGTATATTAATTAAGAAGGAATAGAGTTTTTTTTAGGATTACAACAA
CCTAGAATGTAGCAAAGTCGTTACTCTCATTGTTTCCAATTTCTTGCCGCCCGCCATGAC
TCAAAGGTCTGTGTTGTTTTTGATGTTGCGAAGAAGAATTGTTGATGAAGTGCTCTTGTG
ATGGAAGACACAAGCATTTCGCTCGTTCCAAATGGTCCATGAAGTGAGCATGGTAAGTGT
GGCCATGGCCTTCCGATGACGTCGGAGATTCCCACCCACCACTCTTCGGCGGACCGCAAG
AGGTGCCAAGTGGTGGTGTTAATGTGTGTGAGTTGCAACCACTCCTTGATCATGGTCCAA
AGCATGACAGGGAACCGACACTTGAAGAATACATGGTCGATGGACTCATTCTCCCGCTTG
CATAGCGGACGCATGCCACATTATGGCCATCCACATTTGGCCAGTCTATCTGTGGTCCAG
ATTCTGATCTGGATTGCCAACCAAGCAAAAAAGTTCACCTTTGGAGGCCGCCAAGTCTTC
CATACTGAATCCAACTAAGCAAAAAAGTTCACCTTTGGAGACGGCCAAGTCTTCCATATT
GTATGCTTTGGGGGAGGGGGGTTGATATCATAGAATTGGGTCTTGTAGACGGACTCCCAC
GGAATAAATTCCATTATCGTGCGATTCCAGAAAGTGTCATCCTCGGCTTCGTCCTATGGC
TGGAAGGCATGCAAGATGGCCCATAGCTCAAGGAATTGGCAGAAGTGGGCAATAGTGAAA
CTTTGGGTCCAACTTGATCTTGGAGATCAAGGCATCGTCCTGCAAGGCCTCCCCAACCTT
CCAATTTTGCCTTGTGGAAGCCGGAAAGATAAGAGGAGCGATGTCCTTGGGCTTCCAGTC
TTGCACCTAAGGGGAATCCCGAAAAGGAGTTCGTGCCCCATTGCCAACGGTGATGGTCAT
GGACGAGTAGAAGAGCTCGAAATCCAATTCATCATAAGGGTTTTCCATTCCAACCCACAT
TTTTGTTCGCTCCTTTCGTTCGAACTAGAGCCACCTTAGCTTGAGAATTCTTGCAAATTT
CTCCGTGTGTTTAGAACACCAAGACTCCCAAATTCAAGGGGCGACACATTGTCTCCCAAT
TCACTTTACATTTCACACATGTGTTTTCTGTTTTTTGTTCTCGTCCAAAGAAAGGTTGTT
TCAAGCTTGTTGACATTACAAAGAGTATGTGGTTGGATGATTAGTGGGGTGATGAAGTAC
ACTTCTTGGGAGGCGAGTACCGAGTTGACGGGAGTCGTGGACCAACTTAGTAGCCACCCT
GTCATCAAGGAATTAGAAATCAAACGTAGAGGGACATCCCCAAATATTTTATGGGGAAGG
ACATACAGGCCGTTGGGAGGCTTTGAAGAATGACCACTAAGCTTTTGATAAAGTTGGTAT
AGAAGCTCGTGACATCGTGAAAAGATGCAAAATACTGGCGATGTTGTCAATGTCTCGCTT
GATGGGGGCCATGAAGACTGTCATGTCATTTGTAAAGGGAAGTGCGCAACACTGCACTAC
AACCATGATTTTGGTTAAAAGCCCTTTCTAGTTTCCACCTCAAGGATCCATTGCGGTGGG
GACCGGGGGGGGGGTCGATAGCTATGGCAAAGAGCAGAGAGGACAACGGGTCCCCATGCG
AAGCCCGCGGCCATGAGCAATTGGCATGTCAGCAATCCCATTTAATAGGAGCGCAGTGAT
CCAATCCCGAAAAATGCTCGGGAAGGCTCGGCGTTGGAGAAGGTCGAGCATGTACTTCCA
CTTCACGGAGTCAAAGGCCTTTCAGATGTCGAGCTTGAAAAGGAGGGAAGGGGTTCTGCT
TATGGCGTCGCCAGGCGAGGTTCCGCACAAACATGAAGTTGTCATGGATGCTTCTTGTCT
TGATGAAGGCGCTTTATGTGCGAGACGAGAGCATGCATGTGTTGTTTGACGCGGGTGGCA
GGGATCTCGACAATAGTCTTGGCCACCGCAAAATTTCCTCGACACCCTCTTTTTTCGGTA
GTAGAACAACATTGATGGAGTTAAGCCAATGTACATTGGTTGTGTGAAGTGTACCGAAGA
GGAATATCACATACATGAGGTCAACTTTGACTATGTCCCAACACTTCGTGAAGAAAAAGC
CGATGAAGTCGTCCGGCCCGGGCGCTTTGTCACTCGACATTTGGTTAATCGCATCCCACA
CCTCCTCCATAGAGATTGGGGCCGCAAGGGGAGCCAAGTCATGAGTCTCGAGATCAAGTG
CCTCCCAATTGAAGTCATGGACCCTTGTGGTGCCTCTACTCATCACTTTGGAGAAGTGAT
GGTGGATGATGTTCTCTTTGTGCCCATTGGTCGATGATCTAATCGATGTTCTGCTTGATC
CGGTGGATACAATTCTTCCTGCTTCTAGCATTTACCCGCCGGTGAAAAAAATGGTGTTGG
CATCTTCCTCTTTAAGATCAGTTAGGCCCTACTTGGATTACCATTGCTCTACAGAATACG
CCTCCACCCATCGGTTTAATTTCCAGTCGGAAAATACCCATGCCCAGTAAGATACACTTG
TAAATTTTACACCCATGTATTGAATTACACATATACCAAACACGCCCTTAGCCTTTGTGA
CAGCCCGATGCCGACG