Map Locations of contig_42148 (7731 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_42148

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_57845 2 1542 bp AK355408 Available Available None
MLOC_57844 1 2415 bp AK367969 Available Available None





CDS Structure of MLOC_57845






CDS Structure of MLOC_57844






Contig Sequence (7731 bp)

>contig_42148 7731 assembly3_WGSMorex_rbca.fasta
TCTTGAAGGCGTCGTCGCAGCTATCATTGCCCGTCGTGTGGCTCCAGGGGAAACTCTGAT
TCTTGAATCGGGCGGCGGCGGCGTTACGGTGGCGTAACCTTCCTGAAGGCGCCGCCTTGG
AGCCCACGGTTCGCCGTAGGCAGCTTCATCTCTTCACGGTGGCGTGTTCACAGTTGAAGT
TCTCGGTTACTCTCGTAGTGCTAGGGTGATGTTGCTGCGCTCAGTGCCTTTGTATGTGTG
TGTGTTGTGGTGGCGTGCGTTTGTACTGGGTTGATGATGGTCGTTGCTTTATATATAAAG
CGGGGCGAAAGCCTTTTTCGGTAAAAGGGCTCCGTGCTAGCGTGTTTTTTCTTTTCTCGG
TACGCACTATGCGGAGGCCTAAGACCACCTGAACATTCAGATGTTGAACATGAGTGTATA
TCGATGCAGCAGAAGACTCTTTCTTACAGACTCGTTTGTTTTGTAAGAAGCTACAACAAA
TCCATCCCAATAAGAAAATACATGGTCTATAAAAACTTGAGCAAATGGACATTATTTGGG
GGCTAGCCATTTGTTTGCTTGTTCAACTATTGGTGAAAATAGGAAGTCAGAAGAGTTATG
CACCATATGACGTTTCATACTTTGGAGAACCAATTTGCCATAGCATTGCCAAACATGCAT
TTTTTTTGGTTAATTTGAAATATGGCACTGCCAACTTTGCATAATAAAAAATGTGACTAA
AGAAAACAACTTACAAAAAATGCCATTCAAAAGCTATAAATGAAGTTAGTGGTGATGTGC
TCATGTTCCCAGTTTTTTTTTCCACCCATATGCCTAGCTTGCTGTCATCTCGTTTTACGA
ATTACACGGTAGCCTTAAGCTCTTAACTATGGGCTTCTCTGAAGGAAAGTACATAATCAT
TTTCTTGATTCTGTTGAATCTTTTCATCCATATGCCTAGCATATTGCCATATTTGCCTTT
CCTTAACTAGTTCCCAGATTTGTTCTTTCCTCTTTATTTACATCATTAACCAATATTTTA
TGTTCGTTTCTGCTGGTCTAGTTAAGCCCAATTCACCTAATTTTTGTGCAGAGGGAAGTT
TGTGCATTTTGCGACGATGGTGGCGAGTTAATCTGGTAGGTTTATCTACAATCAAGTTTC
AGTGGCTTCATCTTTAATGAATGTCCAGTTGTGATCTCGAATTCACTTTATTTCCTTGAG
GATTGTTCTCCACTGAAACTTTGACCTACTCTATAGAGCAATTTAGTTTCTTGACACATA
CATAACACAGTTACTGGCTGTGTAGTGTTGTAATTAATTAGTGTTCTTTTAGCAACAGAT
TTCATGTTTCTTCAACCAAACTAATGATACTAGGAATGCTACACTTATCTACTTGGATGG
CTGATATTCACATGATAGCTGTTTCCAAATAGATAGCACATTTACTATGTCCAGAAGTTG
CTCTGTGATTCAATCCCACCAATATTGTGATAGGCATCATGTTTGAAATGAAATGTATGG
ATCTTCTTCAAGATTATTATCAAATGTGTTTTTAAGTTTTAACACCCCACTGAGTTATGG
TGTCCAGTGTTATAGATTCAAGTTTGTTGAATTTCCTGTTGCTATGAACGAACCATATTC
CTTGCTTTATGTCAATTTTCTTTCTTACCTTATTTTTTTTAGCTGTGATGGTGGATGTCT
GAGATCCTTCCACCCAACCAAAGAACATGGTGAAAGATCTATGTGCACAAGCCTTGGGCT
AAATGAAGCAAAGTGGGAAAAGCATAAAGCACTAGGGGTATATGATATATTTTAGTCGTT
TTTCATTTTGCACTTCTATTTATGTATAGGAGTTGACATTTTGCTTCATATTTTGAATGG
TAATTCAGGAAAAGGGGCTATATTTCTGCAATAACTGCAAGCATAAGCAGCACCAATGTT
TTGCTTGTGGATTGTTGGGGTCTTCGAACTTAACAGCAGAACCTGAGGTATGCAGAACAG
ATACATTTCATTATCTTTCATCGATACTTTCTGTCTTTGTTTATTTCAGAAGAGATGAAG
AAATGAAATTAAGTATATTGCTCAAAAATTATAAGACATAGGAAGTATCTCAAGATGCCT
TTTTCATTATAGTATTATCTAAGATGTTAGAAAGTAGCGCAACACCAATGTGTTGCTGTG
AATTAATAAAAAACTATATACTACTACATAACCTATCATAGGAGTACATGTACAAGATTT
TTTTTCGTTCATGCCAAATCAAACTATACATATCCCTTCCCATCCAAACCATCTGTGTCA
GATCTATTATGTGGTGTATTCAAAGCTGGATGGACTGCCACCACAAAGTGGCATCAAGCA
CACCAACGCCGCACTCGGTGATGATGTGCTTATTTGCTTATCAGTCGGGAAAGTTGTAGT
TGAGCTTGGTCTTTCTTGCCCTCTTATCTCATCCATCAGCTTGTATTGGGATATGCGCAT
ATGTCAGGACTGTGTCAGAGCTTAGCAGTGAAATTAAGTCTTAAATGGCGTTTGACTTTG
TGTGCTGCACATCTATACGAGTAATAATTACTCCCTCCATTTTTATTTACTCTGCATATT
AGCATTGTCTCAAGTCAAACTTTCTAAACTGTAACCAAGTCTATACAAAAGATTATTAAG
ATTCTCAACCAAATCAATACCATTAGAATCATCATTGAATATATTTTCACACCATATATA
TTTGTTATTGTGGAAGTTTATATTGTTTTTTCTATAAATTTGGTCAAACTTTATAAAGTT
TTAGTTAGGTCAAAGCTAATATGTGAAGTAAATAAAAACGGAGGAAGTATAATATTAAAA
TACTGAATTTTCTACCAACTTCTTGATGTCTTCTCAGGTATTCAAGTGTAAGCACCGAAA
GTGTGGGCACTTTTACCACCCGGGATGTGTTGCTGAAATACTATACCCTGATAACAAAGC
CAAGGCCACGTGTTTTGAGCAATGTGTTGCTGGTGGACTGGAATTCAGTTGTCCCGTGCA
TAAATGTAAGCGGTGTAAGGAAGCAGAGAACAAGCATGACAAGGAAATGCAATTTGCGGT
ATGCAGGCGCTGTCCAACTGCATACCACCGCAAGTGCTTGCCAAGGTTTGCCTTTGCATT
GCCATCCTCAACCCCGTCTTCTATGTTATGCCCCAGTGCAGAAAACAAGATTTTCTTGTC
CTCACTACCATTACTTGTTTTCTAGGGATATTTCCTTGACAGAGGACGAGGAAGAGGCTA
TGCCGCAAAGGGCATGGGATGGCATTCTACCAGATCAAATTTTGATCTACTGCAGGTCTG
TGGATTCTCCTACTTCCATCAGTCACATATATACTTTCTCCAGTTTTCCATTTGTCTTGG
TTTCCAATCCTCTGACCCTAGTGAATCCCTGTAAATGATTTCAGGAAGCATGATATTCAA
AAAGAACTGGGAACTCCCAAGAGGGACCATATTGTCTTTCCAGATGTTAGAAATCCCGGT
GCAGCAGAAAGGCATAGAGGTGCACCTCAGGAGCACGGTATACTCGATGAAGACGAGCTA
GTCGACCGCAATCCATCTCAGTCCCCTGGGCCGGCAGAAACTGGCAGCGGTAGGGTGAAG
CCCATCGATTCATTTGCGCCAAAGCACTTGTTCTCGCGTCCGCAGCCAGGCTCCTGCGGT
TGGCTTGATGACTGACGATCCATTCCTTGTCTCCAACGTTTGCCGTTACAGGCTCCCTCG
TATACATTTCATGGCATCTCGAGAACACAAAAGAAAATGTTATGGAAAACTTTGTGTTGT
ACTCCGTACATTTCTTTAGTCTTTGCGCGCTCTGAAGTTGATGGGGCGCTCCTCCCATCC
ACCCTCGGCCCCGGTGGCGGCAATGGCGGAAGACAAGACCGGGAAGGAACCAAATGATGT
GTTATCGCGCGAACGATCGTCCATCATATATGTCATTTCTACTATTTCATTGCTAGATAC
GCTATAACATGACGACTCGCCAAATAAACCTCTTTATATCCTGAGGTTCTGCCTCTGTTT
TTCCAATTAGAAAAGGAAAAGGTTGCCATGACAGGAGCTTTTGTTGAACTATTTTCAGGG
CGAAAACTCTTTGCAGGAACGTTGCTTCTAAGCACATGGCATTTTTTTTTACCACAGATG
ACATTTGTACTGAATGAAAGTTACGATTCTTCCTATATCAATTTTTTTTCTTGGACCTCG
AGAAAACACTCTGCCATTCGTAGAGAGAATTTCCAGATCAAGCAAGCCATATTGCAATGG
TACATTGGGATCACAGAATGTTACTTCTATAGGAACAAGTATAAATACATGAAATCAACT
AAAAAAAGTAAATACATGAATGAAACTTGTAAGCTATCACGCTGTGATTGGGTAAACCGA
GGTTAAGTGAGCACATCTCGTTGAGGTTAGTATATTAGCCTTCTGGTAACTTTCAAGGAG
AAAAAAAAATGGAGCATTGGCATTCTTGCCATACCAAGTTGAATGCCTTTGGGTTTTTTC
TCAAAGGATGGGAATGAACACATGAATTTCTCTGACCTGATCAGACAGACAGACAGCCTA
CAAGAAGCTAGCTAAGAGGTATAACCAACATGAAAACCTGAAACCTTCCTTGGACATGAG
AGCACAGAGATGCTCAATTACACACGGTGATCATTTTTGGAGGGCAGGAGACATCGTTTG
CCTGAGGAGTTATTTCTGCCTCCATGTCTGAAACATCCTTCAGCTTATCGTCGCCTTCCT
TGAGAAAACCCAACGCTGACAGACCTGCGCCATGCCTGGTGCTGCAGTCATCGACGTCCG
AACATCCTTCGAACATGTACCCGATGTTGCTCTCGAAGGCGGGATCGTTGAACCACTCGC
TCAGATTCATCGAGCTGCTGATGTTGGGTCCAAAGATGGGGTCCACATCATAATCCATGC
AAGGGCTCCACAGGTTCTCCTCGACGCCGCTGTCAAACACAAGGGGGGCACCGATGTCTC
CTGTATTGTCTGTGTCATCCACTGCAATCGGCTCGCTGACGCTACCTGGCTTCTGCGCTT
CACCAGAGTTGAGCTCTTGTACTGCATTGTCACTTTGGTGATCATGTTGAAGCTCCTCTT
GCAATGCTGGCACCACCTGTGGCCCCTGCTCCAGTTGCGCCAGTAACTGCGGCTGGTCCA
GGTAGCGGCTAATGTCAAAATTGGTTACGGCATTTGCGCCCCGGTATTCGATGGCAGCAA
GATCATAGGCCCTGGCTGCTTCCTCTTGGGTATCTGCATTAAGAAAGTAGATGCACTATG
GTGAGCTAAATCAAAGAATTACCAGAGTTGTTTGGTGATATCAGTGAATGAGCGTAAGCG
TCAAGTATCTAAGAGCAGAAGATGCTGAATTTCACATCCTAGTTGCCTGAAAGACGACAG
TGGATGGGGTGCTTGCTGCTTTCACATGTGCTGGTCACTGGAGTTGATTGTGGTGCTTTG
CTACTGCAGTAATTAATTAGAGAGCTCTTGTGGCAACCTGCCCTTAGTGGCGATCTTCTC
GCCCTTTGGGGATTTTTTTTTCCTTTTTATCTCAATCTGCCCTTTACTAGCAGGCGGTGT
GTGGTGAATCATATCATTTGTGCGGTGGTTTGGATCCTGAATCTTGATCTGGTTGGTTTT
TGACAGAGAGGAAGGCATGCCCCATGCACGTGAGGGCGAGGCGACCACTCACTGCTGAGT
CAGGGAGGCAAGTGAAAAGAAGACAGGGAGAGATTGAAGATCCCTATGCACCAGCCGGTG
GCATTGCCACTCCCACCACGTGCCGCTCACATGCCTGCCGTATTTACTGGTAATTAGCAG
TGTAGGGCATTGCGTATGATCTGATCCAACACTTGGTCTGTGCGCTTAATGTTATTTTTA
GGGCAAGTTGAGCAATCCTCTTGGGATCGCACACAGGATGGTATCTTGGTCTGTCTCATG
GTCCTGAATCTTGACCCTGCCAGCCCTTTTCTTTCTTTCTTTCTTTCTTTTTCAGATATA
CTATGCAAGTAGAAAAATGAAAAACAAAAGTAGAACTAAAGCGAGAATAACAACTACTCC
CTCTGTCCCATAATATAAGAGTGTCAAAAACGTTCTTATATTATGGGACGGAGGGAGTAA
TTAACATAGGAGGAGTAGTAGTAGAGATTATGGTAGCAGCAGCATTAAGGTGAGGCCGTG
TGTGGTGCATTGAAGGGAAACAACAAGTGCATGCCATTGAATATATGTGGGTGTTAGGTT
TGATCATAAAATTCTGGTAAAAGTTAGGTGGGCAGCTGCTCTTCCCTTGCGGAATGTTAG
TAAGCAGGACGGTTCTACAACGAACAATGGTAGCCTTTCAATGCCGATTAATTAAAACTG
TTTTCTTGCTCAAAGGAGGAGGGGGAGGAGGAGGCTGCTCACCAAAGGTTCCCAGGTACA
GGTACTTGTTCCCCAGCACCCTTCCGATTCGCGCCTCCCATCGCCCATTGTGGTGGTGCC
TGCACCCAAAATTACAAACATTTACGTATATTCAGACACAAATCCTGAGTGTTTCTCTCT
GAAATTTCAGTAAATCCCTGTGTATAGTTTTGTCAAAAATCAGTCGCAAGAAAAAGTTCA
ACGACATTCGTTGAACTGTTTTTTGTGAATTTGAGTCGAAATTCCAAACCGGACGCCTGC
TGTCGGCCAGGTTGGACTTTGTTGGGCACACAGCTGACGAGAGAAAGAGGTAGGTAGGTG
AGCCATCTGTGGCCACTCTAGATGACATGGCTGGCCGGGGTATGACGTTGCACTTTGTGC
CTGCCAGCTGACGCATGCAGTGCCACTGACTCCACGGTGCAGATGGATCCTAGCTGCCTA
CGTACCCCTATTTTGTCAGTCCACCAGAAAGGTCTCTCCTCCCGAGTCAGCACCATCTCT
GGATCCCACGGAGTGTACACTTGGCACTCGGATGCCACCTGTCTCCTTTCTTCATGAATT
TTGCATGGCTCGGAATAGTAGCACTAGTTTTGTGGCTAACCAAAACAGGAGCTGCTGATT
AATGCGGTATTAGTAGTGTATATAGTACTCCTACCTGGCGACGCCCCTGTACTTGGAGAC
CCCCCTGGAGAAGCCGCTGCTCCGGCGGCGGAGCGCGGCGAGGTACTCCTCCCGCGACAC
CGCCTCCATCTCTGACCTCTCCTTCGCGTACTCATCCACCTGCGTTCATGAACAATGCTT
GAGGAACGTTATTTTTGCATAGTAGAGTGCTTATAGTGATTTAAACGCTTTTATACTAGT
TTATGGAGGAAGTAACTATGTTTACTTTGTTGACAAACAAACAGTTGTTACACAATCAGC
ACATTAGAGGCTGTATTTTTATGTGCTTTGCTCATCTAAGTTGTACACTAAAACATGGAC
TGTCAAGGCGTTACTACTACTCAGTGACTCATCTCTTTTGCTCTGCTGTCACCTCCATAA
CTCTCGAGTCAATGGACAATGGCGGTGCTTGCCAAGACACACCCTGGCTCCTGCTTGTAC
CAAACAGGAACTGACGCAGCAACTTGGGTACACATTCATATCAATGATTCCTTTTTTTCT
TCTATTTCCAAGATCAGCAAAACGTACCGTGAAATTCAGTGTGGTTTCAGGCCCCCAATA
TTTGAGAGCTGCAAGGTCATACGCACGAGCAGCTGCCTCCTCTGTGTCATAAGCCCCTGC
AGAGTGACCACACGCTCAGACAACCAAATCGTCAACAAGCAAAAAATAAAA